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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0318100 |
| Transcript ID | LotjaGi3g1v0318100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Lateral root primordium 1; TAIR: AT5G12330.1 Lateral root primordium (LRP) protein-like protein; Swiss-Prot: sp|Q94CK9|LRP1_ARATH Protein LATERAL ROOT PRIMORDIUM 1; TrEMBL-Plants: tr|G7LG16|G7LG16_MEDTR LRP1 carboxy-terminal domain protein; Found in the gene: LotjaGi3g1v0318100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:67328469..67333865) extracted from Lotus japonicus Gifu genome v1.2.
TTCCAAATCAAAGAATTGAATCTGGAAGTGGAGTTGTGGTGTCAGGAACCAGTAGCTAGTAGCAGTGGCTTTTTCTCCCT ATTCTCAAACCTACTCTACTCACTCACCTAAAGACACAAACATATAACCAAATCAAATATTGCACATCACACAGAATCTC AATCTCAGAGTCTCTGTTCACATTTCATTCCCTCCATCAATACATAATTAAGCCTCAACATTCAACATCTTTTTCCCAAA ATCCAAAAACCTCAGTCTCACAGACCTTGTTGCTGTTTCCATGAGCATGTTAGGCTTTAGAGACCTAGTTTTCATAGCTC CAAACCCTTCTCAAGCCCAACCCTTTTCAGCAGACCACCATGCCAACCTTCCTTTACCTTCATCATCATCATCAGCAGCA CTCAGCGTTGGTCTTGGCATTTTCCCACTCCTAACCGCCACTCCTTGCATGCCACAACCTCAACCTCAACCTCAACCTCA GAGCAATACCAATGATAATGTTCATAATCATAATCAAGATTGTGGCAATGGCAACAACAACCCCAGCTTCTGGAACCTCA AGATGTGTCCACCACAACTGAATTCATCTGACAGAAAAGCAGCGATGATTATCAACGTGGAAGAGGAAAACGGTGGTGTC TATGGAAGTGACTACAGAGTGTGCCAGGATTGTGGAAACAGAGCAAAGAAAGATTGCAGCTACAAGAGATGCAGGACATG TTGCAAGGGGCGTGGATTTGACTGCAACACTCACGTGAGGAGCACGTGGATCCCTTTATCTCACCGACGGGAGCGGCATG CGGTGGCTGATGGTGGTAGTGGGGGTGACAGTGATGGTGGTGGTGCTTCTTCTGGAGCTAAGAGGCCAAGGTCATCACAG AATGCTGGTGGTGCTACCTCTCACAGTTCCACCGCCACTAATGCTGCTATGTCAAGGAACTTAAGCTTAGATACTGCCTC TTGTCACCAAGGTAAACCATTTCCTCTTCTCTGTGTTCAAATTTCATGTGACACATGAAAAATTTGGTACATGCTTGATG CTTTCTCTTTGTGCACATTTAATTAGTAGATGGAGTCTTTTAAAAATTTATAGATACTAAGAGAGAAACAAATATAGAAT TATATACTTAATCAATATTGAAAGAATTGTTGGTTCAAATGCTACATATGCAATGCAGTAGGGGAGAGAGGAGTGGGTGA AGGGAGGGGGACATGCTGCTACCTTGGCCCCTCAAGCTTTCCAATTTTATTTTATGTATGTGAGCTGTAGAAACCATCGT AGGCATGTCATATTTTGTGATCATGTTCCTCCCCGTCTCAAATTCCTTCCTCCGCCACTGATTGCATGCTTAATTCCTCT TAATTAAGGTTTCACTTTCAAGTCATATATGTAAAAAAACAGACCTGGGTTGCTGCAGTCAAAATAGGGAGCAATCAGCT AATTAGAAAATCGAGATCAGACGGTCTATAATTAGTCATAATAAATTGGAATTAGAACATGAATTTCAAATTTCAACCGT TCAATCTCCATCCAATAGCTACATTTGATGACTGCACTGACTACATTATATTTTGACCACCAAATCCAAGTCGTGAAAAA ACCCCACTGAGAGAGCTAGTATCACTGAGAGATGGATTATCTCCTGTTGAAGGTTATCTGTGTTACACACAAAAATACAC TTCATGGTTACTTTTTTAGTTCCTTGTTCTCTATAATGGTGGAAGTTGATTAATTTTTTTTGTATTGAATTGCAGATGCT GGTTTCAAACAGTGTTTACCTGGAAATATTCGTGCACCTGCTGAGTTTAAGTGCCTTAGAGTGTCTGGTATTGGCAATGG TGAAGATGAATTTGCCTACATGGCCACGGTCCGCATTAGCGGCCATGTGTTTAAGGGGTTTCTGTATGATCAAGGGGTTA GTGGGAGAAATGAAATGCCTTGTGTTTCAGAACTGCAATTGGGAAACAATGGCAGTGGAAAGAGTAACAGGGAATGTGCT TCTCCAATTGGAGTTCCAACCAGTGTTTTCCCTGCTTCTGCTTGCTGAGATTGCCTAAAGGTAAAAAACTCACCAAGCTT AGCTTAAAGTATCATTTTGAACTCCATTATGTATGAGAAAATAAAATTGAATTCTACAAGATTGTAAGCGTTCGTGTTTA GATCAGCTTATTTTCTCTTAGAGTCAATTCGGGCTCTCAGAAACTAATCACGTAAGTTTCTTCTTAGAATTAATTATGTC TTAGGATATATCAATTGTAAAAGGGTTTTCAAATATGCCCTTAGTCTCCAATGAAAAGGAAATCAGCTATCTGGTTGTTG ATAAGAAAAAACTTAGAAGATTCTTGAACCTCATCATTTTACTGAGTGAAGTAATGGTAATTTTAAATCAATTCAGGGAA TAGGTTTCAGTTTCTGGCACCTTGATGCTCTATAGAATGTTCAAAAAGCACAGCACAAGACAGGGAATAGGTTTCAGTTT CTTGCATAGGATAGAGACATTTGATGTTGCATTGTTGTGGGATCTTATCTTCAATGCTTAATTAAAGTTTTAAACTAATA GGCATTTAGCCATTTAACAATTTAATTGCACCAAAGTTTGAGTTTGAGCTTGTACATGGAAAGATTAGTAAGTATGAATG AGAGTTCGGTAGAAATATAATGTTTTGACTGTATTTTTTTTTGAAAATGTTTTGACTAATTATTGTTTTTGAAAGAGCCA ATCATATTAAGAGAAACAAAAGAGGCCATGGGCAATTACATCATAAGCAAAAAAAGGAGAGATCTTCGAAGGTGCCTCTT CAATCCAAACAGAATTAAGAAACAAAGACGTGTTTTTGGCTAAGTAATCAACAACCTGATTATCAGCCCCACGCACAAAT GAAAGCGAAAAAACTAGGAAAAAAGCGACGACAATTCCTTCCAACCCTAGTGATTGGGAACTTAATCAAACTAGTGATAT TTTGGTATATTGTAGATTTCACTCATTTTTGGATAAATTTGGGATCCGCCCATCTACTTCAAAATTTTGGAGTGTGAAAC ACAAGGATAGCAACAAGAAAATGACCATTATCTTTCTGCAGTTGTGTAAAAATATGAACTAATATTGATCAGGTTGCACA TGTATAGTTAGTTTCTGGAATTATGATCCACGAAGAAGAAGCAGAATTGAGGGGTTCAATGAACATTGATTGATGTTTTC TGAAAATGTTGATGGAGCTAGATAATTTTGTAAAATTATTACAAAAGGGGACACCGGTGGCTCGAGGGACCATGGAAGTG AAGATTGAAGCTCCTTTTTAGATCATTTACAATGGTTTGTTGAGAGGGGTTAATTTTGGTGTTGAACCCTTGCAATGGTT TGTTGAGAGGTGTTGAGAGATGATGTGGTGGAGAGAGATGATGAAATCTCTCAACATGTTGAATCTGCCAAGGCTGGGGA CACGTGGCGCCTTTGGAGTGGTTCGGACCAGGCGCGTGCAACTCACGCGCCGACAAGGCGCGTGAGGCGTCAGCACGCGG AGAGAGAAACTTCATCTGATTTTGGATAGGGACGCGTGTCAGCTTTTGATTGGTTGTCTGAATTTTTATCATTTTAATCT TTTGAACTCAATCATTTTAGGGTTAATCGTCTACTTGATCCCTGTCTTTGTCTCGCCGTCTGAAATTAGTCCCTCCCCGA AAAATTTGAAAATCTAAGTCCTTGCGTTTGGAAAGTGTGTGGAGCAGGTCCTCGCCGGAGTTGGGAGCTCCGGCGAGTGA TGAATTGGCTAGCTGACTGGGATAAAAATGTTGACGTGGATTTAAAATAAAATAAAATAAATAACACATCAAAATTTTAA TTGAATTAATAAAATAAAATAAACAAAAAACCTTCCTAATGATTAAGTAAACAAACTCTTCATTCCAAATCAATTCCAGA AACATGCCCACCTAAAAAATTAAAAACCAAAATACAAGATGAATTCATACTTTTCCAGGAGAACAAGTAACGCATGAAAC AACAACCTGGTATCATCAAGCTTGCCACCACAGTAACAGAATCCAACATCTCCTTCATCTTCTTCCCACTTAAAAAACAA CCCAAACCCAAATCTAATTTCAAAACATCTTCATCTTCCTCTTTTAACACTTCACCGATTCAAGGGAGTATTCCAAGCCC TCAATTTCGTTCCTTGCAACACCAATTGGACAAGGTTTGGAGTGCTCTCTGATGCATTCGTTTCTCTTCCTCATCACCTC ACTGCAACATCACACACAGAGGAAAGAAACACCCCCACCCAGAAACCCATTCCAGATACCCATCTCCACCTTCTCCTGCA ACCCAACCCCACTCATAACCCACCCCTAATTAACCCAAATCACCCTCTTCATCATCATCATCATCATCATCTTCTACCAT GAACCCTAAACCCAGCCACCTGCAACCTCACCCTCTCCCCCAAACCCCAACCCGCTGTAACCTCACCCTCACCTACCCCC AAACCCCAACCCTGCATTTTACACTCCTCTGCCTCTCTTCTCGACCATTAAACCAACAACCTTGAAGCCACCTTCCCTCC TTCAAACCCAGCCACCACCACCCAAACCCGATCGCCCAGGGCACCTTCACCTGCAACCCAACCCCACTCGTTACCTACCC CCACCTTCACCTGCAACCCACCCCACCTTCACCCCTACTCGTAACCCACCCCACCCTCACCCGCAACCCACCCTTGAAAC CCATCTCGACCCAGAAGAAGGGGAAGAAGGAGAATGCCTTCACGATCGACTATGTCGCCAACAACGGCGGCTCCAAGCTC GCTGTCCTCAGCGACGCCACCGGCAGCGAGATCGAGGAAAAGTACGGTCTCGTCTGCGAGCTCGGGAGAGGAGAGTTCGG AATGACGTATCTCTGCACGGATAAGGAGACCGGTGAGGAGTACGCGTGCAAGTCGATTTCGAAGAAGAAGCTGAGAACCG CCATCGACATTGAAGATGTGAGGAGCTCTGTGAGGGCAGAGCTGGGTTTGAGAGGATGAGAAGATGAGAAGAACTCAGAA GGTTCTGGGTTTGAGAGGAAGAAGCAATTGATTTAGGGTTTTTTCTATTTTTATTATTTGGGGGAAATTGATTTTTTAGT TAGATTAGGTTAGATTTGTTAATGAATTTAAAATTAGTTCATTTGATTAATAAATATGACTTGTTATTTAGTTTTTAATT TTTATTTTTTTTAAAGCCACGTAAGCTTACTAACACAGTCAGCATGTCATATCATCACTCGCCGGAGCCCTAGGCTCCGG CAAGGACCTGCTCCACACACTTTCCAAACGCGAAGACTTAGATTTTCAAATTTTCCGGGGAGGGACTAATTTCAGACGGC GAGACAAAGACAGGGACCAAGTAGACGATTAACCCAT
CDS sequence (LotjaGi3g1v0318100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCATGTTAGGCTTTAGAGACCTAGTTTTCATAGCTCCAAACCCTTCTCAAGCCCAACCCTTTTCAGCAGACCACCA TGCCAACCTTCCTTTACCTTCATCATCATCATCAGCAGCACTCAGCGTTGGTCTTGGCATTTTCCCACTCCTAACCGCCA CTCCTTGCATGCCACAACCTCAACCTCAACCTCAACCTCAGAGCAATACCAATGATAATGTTCATAATCATAATCAAGAT TGTGGCAATGGCAACAACAACCCCAGCTTCTGGAACCTCAAGATGTGTCCACCACAACTGAATTCATCTGACAGAAAAGC AGCGATGATTATCAACGTGGAAGAGGAAAACGGTGGTGTCTATGGAAGTGACTACAGAGTGTGCCAGGATTGTGGAAACA GAGCAAAGAAAGATTGCAGCTACAAGAGATGCAGGACATGTTGCAAGGGGCGTGGATTTGACTGCAACACTCACGTGAGG AGCACGTGGATCCCTTTATCTCACCGACGGGAGCGGCATGCGGTGGCTGATGGTGGTAGTGGGGGTGACAGTGATGGTGG TGGTGCTTCTTCTGGAGCTAAGAGGCCAAGGTCATCACAGAATGCTGGTGGTGCTACCTCTCACAGTTCCACCGCCACTA ATGCTGCTATGTCAAGGAACTTAAGCTTAGATACTGCCTCTTGTCACCAAGATGCTGGTTTCAAACAGTGTTTACCTGGA AATATTCGTGCACCTGCTGAGTTTAAGTGCCTTAGAGTGTCTGGTATTGGCAATGGTGAAGATGAATTTGCCTACATGGC CACGGTCCGCATTAGCGGCCATGTGTTTAAGGGGTTTCTGTATGATCAAGGGGTTAGTGGGAGAAATGAAATGCCTTGTG TTTCAGAACTGCAATTGGGAAACAATGGCAGTGGAAAGAGTAACAGGGAATGTGCTTCTCCAATTGGAGTTCCAACCAGT GTTTTCCCTGCTTCTGCTTGCTGA
Protein sequence (LotjaGi3g1v0318100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSMLGFRDLVFIAPNPSQAQPFSADHHANLPLPSSSSSAALSVGLGIFPLLTATPCMPQPQPQPQPQSNTNDNVHNHNQD CGNGNNNPSFWNLKMCPPQLNSSDRKAAMIINVEEENGGVYGSDYRVCQDCGNRAKKDCSYKRCRTCCKGRGFDCNTHVR STWIPLSHRRERHAVADGGSGGDSDGGGASSGAKRPRSSQNAGGATSHSSTATNAAMSRNLSLDTASCHQDAGFKQCLPG NIRAPAEFKCLRVSGIGNGEDEFAYMATVRISGHVFKGFLYDQGVSGRNEMPCVSELQLGNNGSGKSNRECASPIGVPTS VFPASAC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 327 | 327 | 1.5E-110 | ||
| Phobius | 1 | 19 | 19 | - | – | |
| PANTHER | 1 | 327 | 327 | 1.5E-110 | – | |
| SignalP_GRAM_POSITIVE | 1 | 19 | 19 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| Phobius | 4 | 12 | 9 | - | – | |
| Phobius | 13 | 19 | 7 | - | – | |
| Phobius | 20 | 327 | 308 | - | – | |
| MobiDBLite | 55 | 82 | 28 | - | – | |
| MobiDBLite | 66 | 82 | 17 | - | – | |
| TIGRFAM | 127 | 169 | 43 | 5.3E-25 | ||
| Pfam | 127 | 285 | 159 | 4.1E-53 | – | |
| MobiDBLite | 174 | 213 | 40 | - | – | |
| MobiDBLite | 193 | 213 | 21 | - | – | |
| TIGRFAM | 238 | 285 | 48 | 5.1E-24 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0318100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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