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LotjaGi3g1v0320300.1

Overview

Field Value
Gene ID LotjaGi3g1v0320300
Transcript ID LotjaGi3g1v0320300.1
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description E3 ubiquitin-protein ligase; TAIR: AT3G61790.1 Protein with RING/U-box and TRAF-like domain; Swiss-Prot: sp|Q84JL3|SINA3_ARATH E3 ubiquitin-protein ligase SINAT3; TrEMBL-Plants: tr|H8WVC5|H8WVC5_LOTJA E3 ubiquitin-protein ligase; Found in the gene: LotjaGi3g1v0320300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:67989038..67993221) extracted from Lotus japonicus Gifu genome v1.2.

GGGCATCATTGGAAAAAAATAATTAATATACCTCAAACTTTCATTTGGTTCTTATAAAAAAGACCAAGATTTTTCTTCTC TTTCATGCTTATAAATAGGACCGGAGGGAGTAATACATACGCTCCTCTCTCTTTAATTTGAAATATTTGTTCCACTTGCA GACGCGCACTTTTCATTTATTACAGTTTGTTGAGAACTCACCAAAACAACAAACCTTCTTTCTTCTCTCTCTCTCTCCTT CTCTGTTCCTTATCTCTCTCTAATGCCCTTCTGATCAATCCTTCATTCATTCCAGGTATTCTCCACTTTCTCTTGTTTCT TTCTGCAATTTTAAATAATGGGTCATCATCAAAATTTCATTTTTGCGTTTTTTCATTTTTAATTGTGTTTGTTGTTGGAT CTTTGGTAGGTTTGGTTTTCAAATTAGACGCGTTTTTGCTTCAGATGTTAGGGTTTTTTTTTTTTTTTATTTATTGCTGA GGTTCTTGTTTTTTTTTTTTTTGCTTGGTCAATTGGGTGTCTTGCATTATGTGAAATTGTCAATGTTCAAAATGGGTGTC TCATAATTTTGTCTTGCAGGTCTTGCCTCTCACTACTAAGGTTGCATGTTGTGTGTTGTTGGTTTTCAAGGGAAAACACT CACATTCCCATTCAAACCTGACTGTTTTGGTTCATCTTGCTTTTATGCACATGATTGAACCTTCATGTTAAATATGTTCT TAAAATGTGCTTGTTGTTTGATATAAGATGTTGGTTACTCTACTTGAGTGCCTTGATAACTTCAGCTTAGAAAGAAGTTA TGTAAGCCGCTCAGTCCTTGAAATGTTTTCTGACTTTATTTTTTCTTAGTTTAGTGTTGCTTAATATTCATACTAATTGG ACCTGCAATTTAGTTGGAGAGCATATATCTGTCCTAGAAATCAGGATTTTCTATAATGCCCGTATTCAATGTTTCATATC ATTGATTCTACTTCGACTTCTTGAAATGATATAAACTTATAATTTTAGGGTCAACATTTCTAATTTTACAAGAGATTTAT TGTTCTGTTCATTTGCAAGCACATTTTCATTTTCTTTATCATGGTATGTTTCTAGTTAATGTGTTCTTTTGAGGAGAGGA TTGACTTAATCAATAGAGGTAGAAGAAGACTAGAGAGAACTTTAAAAGAAACCATTAATAAAGTCCTTGACTTAAATGGT CTTTCTGAAATTTTGGTTTACAACAAAGAACTATGATATCATTTTATCCATGTAGCTGTCTGCCAAAACTGGTGATATTT TTTTACTTCATAAGGAAGGCATGAAAATGGCCTTGAAGGCCAGGAATGCAGATTGAGTCAGTATCGGAATCGGTTTGGCT GAATTTGAAACTATTGTTAACTCTAACATTTGACATTTTAATGATTAATGACCTAAGCCTGTTAGTGAAGTAGTATTTGA AGTATTTTTTTTTATCATGGTGAGCATCTTGTGTAGGATAAGAAATCAGCATTCTCAATTAAATCAAGTGATCTATAAAA AAATGGATTTGTGAGTTAATTGTAATAATGTATTGGGTGATGAATGTTTGTGCTTTTGGGTGCTTGACTGTTTGTTTGCT TTTGCAGATTTAGTCCATCAAAATATATAATTTACTAATCTGTACTAGAGTTTGTAAATTTGTTTCAAAACTGAATTTGA TGACTGCCACGAATGCATCTCTGATCATCTTGATAGAACATCAGGGTAGGGTGATAGATTAGCCAATGATTGTTAATAAG TAACTGGTTTTCATGGATGAAAACCACAGGGGAGATGCATGAAATGTAATACCTTACTAACTCTGTTATCTTAACTGTAT GATGAAAGTGAAAAGAACTACCATTATTGAATTTAATTCCTGCCTCCCTGGTTGATTCTTATGTTTTTTCACGTTTCACA GGGCTGCTGGTGATTACTCTTTTACTAGCATGGCTTCAAGCAATCCACTCTTTGATGATATACGGAGCAAAGCTGACGTT GATCCTCCTCAAAATGAGGAGTTGACAGGTGTTATTGAATTAGTGAATGATACTGCACAGGCTACTCTTAAACCTAATGG GACCGTTTCAAGCAGTGTTCGCGAGCTTTTAGAGTGCCCTGTATGCCTGAATGCCATGTACCCTCCAATCCATCAGGTTG TTTATGTGTTGATGATTATTTTTATTGTTGATATTTTTTGGGTTCTTGAGGAAGTGTGTGATTGTATTGTGACTTAAAAA TGCTGAGGTCTTCAAAGTGCTATTTTATAAATTAATCAGGGTTGCAAAGTGAAATTAACCAATGCTGGTTTCATTGAATG ATCAATGATGTAGCGAGATTGGAGAAAAGAAAAAAGGGAATTCTTATTTTCGTAGTAAGTTAAACTAAATGGTTTGAGGT CATACTCTCAAACTGTGCATACAGTGTTAGTTTCTCACTCAGTAGTGATTCTCCAATCTCTCAATGATTTTTTCTAAGAA TGGATGTTTTTTCCTGGCAAGAACCCAATCACATTTGCTAGATGTAACTTTTTGAGTTTATATGACTATTGGTAGTTTTT CTTTTGATTTAAATTGAATACCCTTTGATGACAAATTGTGCTTGGAAATCTAGTTAACTTCTCCATTATTATTGCAGTGT TCAAATGGTCATACTATATGCTCAGGTTGCAAACCCAGGGTCCATAACCGGTGCCCTACTTGTAGACATGAGCTTGGTAA CATCAGATGTCTGGCACTGGAAAAAGTGGCTGCCTCTTTGGAACTTCCCTGTAAATATCAAGGTTTTGGGTGCATCGGTA TATATCCATATTACAGCAAGCTAAAGCATGAATCTCTATGCACATATAGACCATATAACTGTCCATATGCTGGCTCAGAG TGCTCTGTTATGGGTGATATACCCTACCTGGTGACCCATCTGAAGGACGATCACAAGGTGGACATGCACAATGGCAGTAC TTTTAACCATCGTTACGTCAAATCAAATCCACAAGAAGTTGAAAATGCCACATGGATGTTGACGGTATTTTCTTGCTGAA CTTATATCTGTCTTCTTTTGGAGAAAATTTCCAGTACTACAGGAGTACTGAGCACTCAGTACTTCCTTGTACAAAATTAC TGTTGAAGTGACAGTTTTTATGATTTTAAATTCGAAAAAACTTAACCAGTCACTAACTATACATGAGTAGGTGTCACAAT TTAAATAGAAGGAGCACTGAGCATTCCGTCCTCAAGGAGGTCTAAATTTTTTTTTGGTTCTTTGGCTGTGGCAAATTCTG TAGGCTTTAGGGGGGCATGTTTTGATGTACAACACGTCTCTGTCTGAATCAATTAATGAGAAACATAGAATTTAAGGAGT CCAATTAGCCTTGTAACTTTCTTTAATTGCTTAGACAAGAAAAATTGCGAGTTTGCTATATTAAAGTGGTATTTTGAAGG AACTATTAATTTACAACGTTGTATTACCTCCCTTGGTTTTGTACCAGCCTCATAGGAACTTATGTTTTTATTTCTTCTCT AAATTTGGGTTTGAGCTGACTCATAGATTTCACATTGGTTTCCACTAGGTATTCAGCTGCTTTGGCCAGTATTTTTGTCT ACATTTTGAAGCTTTTCAGCTAGGAATGGCTCCTGTCTACATAGCCTTTTTGCGGTTTATGGGTGATGATAGTGAGGCAA AAAATTACAGCTATAGTCTAGAGGTAGGTGGAAATGGAAGGAAGATGATTTGGCAGGGGGTGCCTAGGAGCATTAGAGAC AGCCACCGCAAGATTCGCGACAGTTTTGATGGTCTCATCATTCAGAGGAACATGGCTCTCTTCTTTTCAGGGGGTGACCG GAAGGAATTGAAGCTCAGGGTTACTGGTAGGATTTGGAAAGAACAGTGAATGGCGGGAGATGGTGTTCTTTATTCAACTA GCAGTTAAATTAGACTGAATAGTCTGTAGTCCAATGAATTTCTTGTAGTGATATGTATCTTCTGGTCATGTATTTTGTTT TGTAACTTAGGAGTTAGGAGGCAAACTCTCTTTGCTTATCCTTACATCAAATACATGGACATGAAGGTGTACCTCCTATC ATTATGGTAATTATGAAGAGATTTAGAACCTTAGCGTGCTCCTTAAATATTCCTCTTTTTTTTTTCCTATGAATGTCTAC AATCAAGAAGCAATTTAGAAAAAA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0320300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTTCAAGCAATCCACTCTTTGATGATATACGGAGCAAAGCTGACGTTGATCCTCCTCAAAATGAGGAGTTGACAGG TGTTATTGAATTAGTGAATGATACTGCACAGGCTACTCTTAAACCTAATGGGACCGTTTCAAGCAGTGTTCGCGAGCTTT TAGAGTGCCCTGTATGCCTGAATGCCATGTACCCTCCAATCCATCAGTGTTCAAATGGTCATACTATATGCTCAGGTTGC AAACCCAGGGTCCATAACCGGTGCCCTACTTGTAGACATGAGCTTGGTAACATCAGATGTCTGGCACTGGAAAAAGTGGC TGCCTCTTTGGAACTTCCCTGTAAATATCAAGGTTTTGGGTGCATCGGTATATATCCATATTACAGCAAGCTAAAGCATG AATCTCTATGCACATATAGACCATATAACTGTCCATATGCTGGCTCAGAGTGCTCTGTTATGGGTGATATACCCTACCTG GTGACCCATCTGAAGGACGATCACAAGGTGGACATGCACAATGGCAGTACTTTTAACCATCGTTACGTCAAATCAAATCC ACAAGAAGTTGAAAATGCCACATGGATGTTGACGGTATTCAGCTGCTTTGGCCAGTATTTTTGTCTACATTTTGAAGCTT TTCAGCTAGGAATGGCTCCTGTCTACATAGCCTTTTTGCGGTTTATGGGTGATGATAGTGAGGCAAAAAATTACAGCTAT AGTCTAGAGGTAGGTGGAAATGGAAGGAAGATGATTTGGCAGGGGGTGCCTAGGAGCATTAGAGACAGCCACCGCAAGAT TCGCGACAGTTTTGATGGTCTCATCATTCAGAGGAACATGGCTCTCTTCTTTTCAGGGGGTGACCGGAAGGAATTGAAGC TCAGGGTTACTGGTAGGATTTGGAAAGAACAGTGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0320300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASSNPLFDDIRSKADVDPPQNEELTGVIELVNDTAQATLKPNGTVSSSVRELLECPVCLNAMYPPIHQCSNGHTICSGC KPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQGFGCIGIYPYYSKLKHESLCTYRPYNCPYAGSECSVMGDIPYL VTHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDSEAKNYSY SLEVGGNGRKMIWQGVPRSIRDSHRKIRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10315
1 303 303 9.9E-191 –
PANTHER
PTHR10315:SF111
1 303 303 9.9E-191 –
MobiDBLite
mobidb-lite
1 21 21 - –
Gene3D
G3DSA:3.30.40.10
10 108 99 2.5E-9
IPR013083
SUPERFAMILY
SSF57850
48 96 49 2.5E-6 –
CDD
cd16571
54 92 39 2.954E-15 –
ProSiteProfiles
PS50089
56 92 37 9.288
IPR001841
Pfam
PF03145
98 297 200 3.3E-78
IPR018121
SUPERFAMILY
SSF49599
109 301 193 3.6E-46
IPR008974
ProSiteProfiles
PS51081
109 169 61 13.819
IPR013010
Gene3D
G3DSA:3.30.40.10
109 164 56 3.0E-14
IPR013083
Gene3D
G3DSA:2.60.210.10
167 298 132 2.0E-33
IPR008974
CDD
cd03829
170 298 129 2.0484E-63 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0006511
Biological process Ubiquitin-dependent protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
Subterm of
GO:0007275
Biological process Multicellular organism development The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of
GO:0042025
Cellular component Host cell nucleus A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0320300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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