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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0321300 |
| Transcript ID | LotjaGi3g1v0321300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT1G12300.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300, mitochondrial; TrEMBL-Plants: tr|A0A072TKS0|A0A072TKS0_MEDTR Pentatricopeptide (PPR) repeat protein; Found in the gene: LotjaGi3g1v0321300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:68208073..68209162) extracted from Lotus japonicus Gifu genome v1.2.
CAACCATAAACAACACCAATTCTCTATCTGCAACACAATGCCGTCACTTTTAAGGTTTAAGAACTTCCCTTTTGTTTCTT TTCATTCTCACTCTCTGCCTCCTTCCTTCCATTCACAATGCTGATGATGCCGTCTCCTTCTTCAATCGCTTGCTCCGAAC GAGTCCTACTCCTACCCCATCCATCATCGAATTTGGTAAGATTTTAACCACCCTCGTGAAGATGAAGCATTACCCCACTG CTATTTCCCTTTCTCACCAAATGGAATCTAAGGGAATTATTTCTAACATTGTTACTATGAGCATCTTGATCAATTGTTAC TGCCACATAGGTCAAATACCTTTCGCCTTTTCTGTACTCGCTAAACTTCTCAAGAAGGGTTATCAGCCCAACACTGTCAC CTTCACTACACTTATCAAAGGCCTCTGTCTTAATGGTCACGTTCAGAGAGCACTGCAATTTCATGATCATGTGGTGGCAC AGGGATTTCACTTGAATCAAGTTAGTTACGGGACCTTGATCAACAGATTATGTAAGATGGGACAAACAACTGCTTCACTG CAGTTGCTGTGGTAATGTACAACACCATCATTAGGGTGACAACTACATGCATGCTAGTTCATTTGGCATTCGAAGCAGAT CATACCACTGAAACATGTCTCAATAAAGAAATGGTTTGAGGAAATATAGCTGAGGAGGAACGAAGAACATAGATTGGCAG AGTCAGGTGCATGAACCAAACATAGTTGGATGTTTTCTTTATTAGAGAAAAGGTCTTCAACAAAAGTCTAATTGTTCATC ATAGCACTCTTTCATTACGTTACGCTTCAACTCTTTGAGAGACAAACTCAATGTGGTTAACAAGTTTTCACTTGTCAACA CATCTTGAGTTTGAGCGGGACTGTTTGTGTTAGCTTCAGTTCATTAATTAGAATTTTGTTATAACTAGTGTCAGCCAATG TTATGCCAGCTGGTAGTTAGTTTTCTGTTTTCATACAAAATAGTTAGTTTGTATAGCTTCTCTTGCAAGCTACTTGTATT GCTCATCTATATAAGAGCATCTTATTGTAAACACAGATTCAGAATATGAG
CDS sequence (LotjaGi3g1v0321300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGCATTACCCCACTGCTATTTCCCTTTCTCACCAAATGGAATCTAAGGGAATTATTTCTAACATTGTTACTATGAG CATCTTGATCAATTGTTACTGCCACATAGGTCAAATACCTTTCGCCTTTTCTGTACTCGCTAAACTTCTCAAGAAGGGTT ATCAGCCCAACACTGTCACCTTCACTACACTTATCAAAGGCCTCTGTCTTAATGGTCACGTTCAGAGAGCACTGCAATTT CATGATCATGTGGTGGCACAGGGATTTCACTTGAATCAAGTTAGTTACGGGACCTTGATCAACAGATTATGTAAGATGGG ACAAACAACTGCTTCACTGCAGTTGCTGTGGTAA
Protein sequence (LotjaGi3g1v0321300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKHYPTAISLSHQMESKGIISNIVTMSILINCYCHIGQIPFAFSVLAKLLKKGYQPNTVTFTTLIKGLCLNGHVQRALQF HDHVVAQGFHLNQVSYGTLINRLCKMGQTTASLQLLW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 117 | 117 | 1.1E-27 | ||
| PANTHER | 6 | 116 | 111 | 1.7E-21 | – | |
| PANTHER | 6 | 116 | 111 | 1.7E-21 | – | |
| TMHMM | 20 | 42 | 23 | - | – | |
| Pfam | 22 | 69 | 48 | 9.8E-14 | ||
| ProSiteProfiles | 22 | 56 | 35 | 10.479 | ||
| TIGRFAM | 24 | 58 | 35 | 2.8E-5 | ||
| ProSiteProfiles | 57 | 91 | 35 | 10.205 | ||
| TIGRFAM | 59 | 92 | 34 | 6.2E-6 | ||
| ProSiteProfiles | 92 | 117 | 26 | 7.267 | ||
| Pfam | 94 | 115 | 22 | 0.091 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0321300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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