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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0325400 |
| Transcript ID | LotjaGi3g1v0325400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Dynein light chain family protein; TAIR: AT4G27360.1 Dynein light chain type 1 family protein; Swiss-Prot: sp|O02414|DYL1_HELCR Dynein light chain LC6, flagellar outer arm; TrEMBL-Plants: tr|I3SK05|I3SK05_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0325400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:69245754..69246680) extracted from Lotus japonicus Gifu genome v1.2.
ATTAGCACCACCCCGCTTTTATCCGGTCCTATATAACATTATAACCTCCTCCTTCATCATTCACAATTTCCTTACCTTTA ATCAACTCCACTACCTAATCCTATTACAAGCACCTCAGCTCATTTTTTTCCTCTGTTGTAAATTTTTGTTTAGTATTCAT CATGCTAGAAGGCAAGGCAGTGATTGGTGAAACAGACATGCTTCAAACTATGCAGCAAAACGCGCTTGATTTAGCATCCA AAGCACTTGATTTCTTCGATGTCACTGAAGCCATTGAGATAGCCAGATTTATAAAGACGGTAACAAAAACTAGAAATTAA GCCAAGGTGTTTGAGATTCATTTGATTAATATTGTGACATTAATTAATTAGTTAAGGAAATTGAGTTCCTTAATTAGCTG AGATTGATTAATTTGATTCAATTTTGCAGGAATTTGATAGGATGCATGGACCTGGTTGGCAATGTATTGTAGGAACTGAT TTTGGTTCATTTGTGACACATTGCTGTGGCTGCTTCATCTATTTCTGCATAGGCAGCTTGGCCATTTTGCTTTTTAGGGG CTCTGCTGATCAAGAAGCAAAGGAAAATCACTTCTCAGCAGCACTAGAGGCAGCCAGGGCATAATTTCATCTCCTTTTTT CCTCTCCACAGTAAACTCCTCTGTTCTTTGTATAATTGTATTTGTTCATGTACTAAATAGAAAGAAATGGGAAGTTTAGA ATAAGGGGAAAAAATTGGAAATTGAATATTACTGGCTTTTGAGGAGTAGAAATTAGAAAATATCAAAATAGCTGAAGTAA TGAATTTTCCACATCGCCTTTTGAGTGTCTTTCATTCATTCTGATTTGGGTAGAGATAATGCACAAGTTTTGGTGAAATA GTTTAGTTTCATTCCATCCACAAATAACATATTTGGTGAAATAGTTT
CDS sequence (LotjaGi3g1v0325400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTAGAAGGCAAGGCAGTGATTGGTGAAACAGACATGCTTCAAACTATGCAGCAAAACGCGCTTGATTTAGCATCCAA AGCACTTGATTTCTTCGATGTCACTGAAGCCATTGAGATAGCCAGATTTATAAAGACGGAATTTGATAGGATGCATGGAC CTGGTTGGCAATGTATTGTAGGAACTGATTTTGGTTCATTTGTGACACATTGCTGTGGCTGCTTCATCTATTTCTGCATA GGCAGCTTGGCCATTTTGCTTTTTAGGGGCTCTGCTGATCAAGAAGCAAAGGAAAATCACTTCTCAGCAGCACTAGAGGC AGCCAGGGCATAA
Protein sequence (LotjaGi3g1v0325400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLEGKAVIGETDMLQTMQQNALDLASKALDFFDVTEAIEIARFIKTEFDRMHGPGWQCIVGTDFGSFVTHCCGCFIYFCI GSLAILLFRGSADQEAKENHFSAALEAARA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 90 | 90 | 9.3E-31 | ||
| SUPERFAMILY | 1 | 90 | 90 | 7.98E-28 | ||
| PANTHER | 1 | 102 | 102 | 2.5E-52 | ||
| SMART | 1 | 90 | 90 | 7.4E-44 | ||
| Phobius | 1 | 66 | 66 | - | – | |
| PANTHER | 1 | 102 | 102 | 2.5E-52 | – | |
| Pfam | 5 | 89 | 85 | 5.6E-31 | ||
| TMHMM | 66 | 88 | 23 | - | – | |
| Phobius | 67 | 88 | 22 | - | – | |
| Phobius | 89 | 110 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Microtubule-based process | Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins. | ||
| Cellular component | Dynein complex | Any of several large complexes that contain two or three dynein heavy chains and several light chains, and have microtubule motor activity. |
Expression pattern of LotjaGi3g1v0325400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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