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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0326900 |
| Transcript ID | LotjaGi3g1v0326900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT1G77360.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q0WP85|PP150_ARATH Pentatricopeptide repeat-containing protein At2g13420, mitochondrial; TrEMBL-Plants: tr|K7KB23|K7KB23_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0326900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:69474551..69480175) extracted from Lotus japonicus Gifu genome v1.2.
CCAAACATATCACGTTTTTTACCCCTAGATATACTAGTTGATCTAGAAGGCAAGCACAAATGGACAATATACTATCAAAA CATGGTATAGGCTTCTCAGGACCACAAACATGAAGAAAAAAGACGCAGGGCCTTCAAACTCAAGGATCCACCTATGTAAA AAAATTGGGGCAGTTGATGTGCTACCAAGCGGCAAATAGTTTATTTAGAGAGCTTGTAAGTGTGTTTTGCCGGTTAATGT CAATCTGAAATGAAGAGGAATTGATTTCTACCCTACCCGCCTTTGTTGTGGTGAAGACGAAGAAACTACCACCCATGCCC TTCTCTCATACAACAATATCAAGAGAATCTGGTTTGCCTCGCAACTTAACATCCAAGTCCCAGCAAACCTCCAAGACAAC TTCCATTTTTTTATAGGCAAATGTTAATTGTTAGTAATGTTAGTAAATTAGTCTTCCTCAAGGTTCGAACCCTGACCCTT CACCTGCAATTACCCTTAGCTCAACCATGTCCATAACTGGCTAGAACAAATTCTCGAACACCGTGACAGTCCGGTTCAAC CGTTCAATACCAACCAAGTGTATGACCGGTTCAGTTTCAAAATACTTGCTAGTTGCTACATGATCATGGATGTCTGAACT CTGAACCACAGTGGTGGTGAAGTAAACCAAACCGATGGAGTTTCTCAAACTCCGACGACACTGTCCTCGCTCCGCCGCGT TCCTCCCTCCGCGCCTCGCTCTCCGCCATTTCACCTCCTCCACCGACGAAACCGACGCCGAGCTGGTCTCAAAGATCCTC CTCCAACACCACAACCCTTTCCACGCCATGGAATCCTCCCTCCAACTCCACGGCATCACCCTCACCCCAAACCTCCTCAC CCAAACCCTCCTCCGCCTCAAACACCACTCCAAAATCGCACTCTCCCTCTTCAACTACGCCAAATCCCTCCCTAACCCCC CTCTCTCCCACTCCTCCTTCCACCTCCTCATCGACACCATGGCCAAGGTTCGCCAATTCGACCTCGCGTGGCAACTCATC ACCGAAATGGACCAGCGCAGCCTCACCCCGAACCCCTCCACCTTCCTCGTCTTAATCCGCCGCCTCGTCTCCGCCGGACT CACTCGCCAGGCCGTCAGAGCCTTCAACGACATCGACGCCTTCTCCGACACCAAAACGACATCCGAGCATTTCACCGTTT TGCTCGACACGCTCTGTAAATACGGCTACGTGAAGCTCGCCGCCGAGGTCTTCAACGGGAACAAGAGGCATTGCAGGTTC AACCCCGACGTGAAAATGTACACGGTTTTGATATACGGGTGGTGCAAGCTTGGTAGAGTTGAAACTGCTCAATCGTTCTT GAATGAGATGGTGGAGCGAGGGATTGAGCCGAATGTTGTTACATATAATGTTTTGTTGAATGGGGTTTGCAGAAAGGTGA GTCTTCACCCGGAGGAGAGGTTTGAGAGGACTATACGGGATGCGGATAAGGTGTTTGATGAAATGCGTGAGAGGGGGATT GAGCCTGATGTTACTAGTTTTTCCATTGTTCTTCATGTTTATAGCAGGGCGCATAAGCCGCAGTTGTCGCTTGATAAATT TAGGATGATGAAGGAGCAAGGGATATGCCCCACGGTGGCGTCGTACACTTCGGTTATCAAGTGTCTTGCCTCGTGTGGGA GGCTTGAGGATGCTGAGGGTTTGTTCGATGAGATGGTGCGGAGTGGAGTGAGCCCGTGTGCTGCGACATACAACTGCTTC TTTAAGGAGTATAGAGGGAGAAAAGACGCGGACAGTGCTTTGAAATTGTTTAAGAAGATGAAGGAGGATGGTTTGTGCTC GCCGACCGCGCATACTTATGGTGTTTTGCTTCAGATGTTTTTGAAAGCAGATATGATTGGGGTTGTGAAGGAAATATGGA GGGATATGAAGGAGAGCGGGGTTGGACCGGATTTGGATTTGTACACGTTGTTGATACATGGATTGTGTGAGAGGAAAAAG TGGAGGGAGGCTTGCCAATTTTTTGTTGAGATGATAGAGAAAGGGTTTCTTCCTCAGAAAGTTACCTTTGAGACCCTTTA CAGGGGCCTAATTCAGTCTGATATGTTGAGAACTTGGAGGAGATTGAAGAAGAAGCTTGATGAAGAATCCATATCATTTG GCTCAGAGTTTCAAAATTATCAATTGAAGCCATATAGGAGATGAGTCATTGCATATAAGGTACTGCTGAGTTTTTTGTCT GAACTTAATTATATATCCGGTGCGCTGTTGTTTCAGTAGTGTACTAGTGTTATCAGCTTCTTTGGCCTGGTTAAATGGGT TATGCAAATTAATTTTCTTTACAGATACAAATTATCTTCATATTACTGAAACCTAGGTATGAAATGTTGGATGTCAATTC TTCAGTAGAAAGCTTTAGTGTTTACTTATTTATGTCTCTATCTTCTTTCAGACTGCACTTCTATATCTGCATGTTTGCTG GAAAGCATTTTTATCGTTTGAACCTTCTATATCTGTCTGCCTGTTCCATTTTTTAACTTTATTTGAGACTAGAAATGCTT TTAAAGAAGTGTTCCTAAACATGCCATTTGATTGCTAACAATTTATAACAAATAGATTTAGGTTCTGTTCGATTACTGTT TTGTGAAACAGTTTTTAATAGATAAATAACATGTTTGATATAAAACATTTTAGAAATCAGCTCTTGTTTCCAGTTTTAAA AACTAAAATGCTAAAACATTTCAGATGTTTTCAGTGTTTATTTTTAGTTTTCAAGTCAAAAGTCTTTCAGCTTTGCAAAA TATCTCGCTCCGATTGTTATTTTTCATTTCTTCTTTTGAGAAACAGGTTTTTAAAGTTATTTTGGTGAGCAATTTGCTTC TCTAAAGTTTAAAGCTGTAATTTTTTGCCCAATTGTCTATCTAGCAGAGTTGTCAATTGCGCGCTATACCGCGGTAGCGG TGCGTAGGGTCCCTTTGTCTCTCCTAGTTGTAGCATAGCGGTGCAGTTCGGTGTAGCAGCTAGTGCGGTTGTTATAGCAG AGGAACTAGCGGTCATAGAGGCGCTATTTGGTAGAACCAATAAAAACCCATAAAAATTCTCTCAAAAATTTAATGCAGGG TACTTTTGGGGGGTATGTTGGTTTTTTTTCCGAAAGGCTACAGTTTGAGGAGGAAGTGGTAAAGAAATGTGATATTAGTG AAAGTGATTAAGAGAAAGAGTTGGATCTAAAAGAGTTCCTGTCTAGGAAACTTCTATTTGAATTTTCATGTTTTTAGGCA GTGTAGTTCAAGACTTCAAGTATAAGAGGCTTAAACTTCTTGGTACTTTTGTTGGTGCTTGTATGTTTTGTTTAAGACAC CTAGTACTTTTTATGGTTAATTCTGAATGCTATGAATTTTGAGTAGTTTCTATCATTTTTGAGCATTTATATAGGTATAT AATTATATATATAAGCTGTATAGGAGATTTCAGCAGCGGTCACCCTGCTACGCTCTTCACCGCTTTAGCATTTTTTGGGT CGGCCACCATGCGGCGCTAACCAGGATTGACTACACAGCTGTGTAGTTTGGCAAGATGTGACGGAAGATACGAGAGTTGA GGGATTTGGCTTTTTTAAGTTATGATTATGAATTCACTTCATAAGGAACAATGAGGAGTTATAGTCAATGGTTGGGATTG TGACTAGATGCATGGACATGTAGAGCAAACCATAAAGTTGTTTAAAGTACTACAAATTTTCCAATCAGTGACTATAACTA CTCATTTTCTCTCTGAAATGAAACCCTCACCGTGTAAGAAATGGCAATGGGAAGTTTTCCTTTCTCTTTTTCCTGTTTGT TATTTCTTTGGTCTGGTGCATTGATCAGTTCCATATTTCATGGACGATACAAAAGAAACAAATTTGTCAGTTTATTGAAA CTAACCACACAAGAAACTACAGGGGAGTTACAACTGAGAATAAAACCATAAGATTTTTAAAAGGGTTCTTTTACTCATGT AACAGCCAATTGTCAGACTACTTCTCAAGACACTGAAGTCATTCTTTTGAACTTTTTGCAGCTAGCAGCTTAATTTAGGG TGTACTTCAGCACTTCCAAAAGAGGAAGTGTGATGGTCCTCCAATTGAGGTCTGCCAAAAAGGAAGAAGATAAGGGTAAA TTGGAAAACAATGGGACTGGAATTAGGAAAGAACACGTGAATATGATGGAAATGGAGGGTGGTGGGAAGACAAGGGTTCA TGAGTCGATATTACTGTAACAATGATATGAGAATTAAGAAAACAAAGCCCATATTTCAATGAAAACTGGCTAAAGATATA GATGTGGAAAATGAAAGGAAAGTATCAGAGGAGAGGACACAGAAAAGAAAATGGAGATGAAAGGATTAAAGAGAAAGAAT CAGAGAAAGACAAACTAGAAGAAACAAAGACTTGGGGACTGTTTGATCGCTGCTTTTGAAAACTGTTTTATATTTTCTTT TAAAAAAAACTTGTTTGATGCAGCTATTTTATCATAATAGGTTTCAGAAACAGATTCTTGTTTTTAGGTTCTCAGAACAT GAAAGCTGTTGTTGTTTTCATTTTTCTTTTTATTCCTTTTCTGAAAGATTCTTGTTAATGGTAATTTTTGTAAATAGTTA TTAAACTTAAATGAAATGGAATAGGTTTCAGAACAAATCAAATGATTGGCTGCAGGCCTGCACCTGCTAGAGAGTCTTCT TTGCAACCTTCTGAGGTAAAAGATCGGCAATAGAAGATCGCCCTGCACGTCCAAACCTGTGAACTCAGGTTTTTTTTTCA GCTTGGTTTGTGTTGCAGTATTATGCTTTTGCACTACATGTCCTTGCTGCACGTCACAAGGGAGCCTCTACATAAATCTT GACTCGCATCCACTACTGTGAAGAAGGGATCTGTTGAGGCACTGCATCTCAGTTTGAAGATGTTAGAACATGAATAGGGA AGAGGAACAGAGCACTGAAAACAGAAAAAGGATGGAAAACCAGAGGCAGAATCAGGGTAAAGCTGGGTTCCTTTACTACA TATATTTTCTCTAACCATTGATTTATTGATTGTATCAAAATCATTGAGAAGTTGTGCAGTTCCTTATCAACCCGTGCTGT ATAAATATAATTAATTGATGAAAGCTAAACCATTAAGGATTGTGCATGAGCTTTTTAATAAAAGCCCCTGGATGTGTATA GTATTTAATCCATCCATTTACATACTGATTGAAGTGTTTTGAGTCTGGTATGTGCCCGCAGCTTGATTGAAATTATTTGC TGATGACTTAGCTGAGATACCGATGTAATGGTTAGTAATAGTTACTAAATGATGTTGTTCTCTTTTCTTCTGTGCCAATT GTGATTTCATCTATTCATTTGTTGTCTCAAAGGCAATCTTTTAGAACTTAGATTTCGGATGAGCCGTCAGAGAATGTAGA TGATTTTTTCCAGGCCTTATATTTTCCTCTTGAATGTGTTATTTATGTGATAGATATTTACTTGAGGAAGAAAGTAATCA TGATAATAGTGTGTGACACTTACTATTACTGAAAAAATTAGAATGTTGTCCATTAATTTCTAGTCTAACTATTATCCTAC TCTTACTCAAATCTACATGTGGATG
CDS sequence (LotjaGi3g1v0326900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTTTCTCAAACTCCGACGACACTGTCCTCGCTCCGCCGCGTTCCTCCCTCCGCGCCTCGCTCTCCGCCATTTCAC CTCCTCCACCGACGAAACCGACGCCGAGCTGGTCTCAAAGATCCTCCTCCAACACCACAACCCTTTCCACGCCATGGAAT CCTCCCTCCAACTCCACGGCATCACCCTCACCCCAAACCTCCTCACCCAAACCCTCCTCCGCCTCAAACACCACTCCAAA ATCGCACTCTCCCTCTTCAACTACGCCAAATCCCTCCCTAACCCCCCTCTCTCCCACTCCTCCTTCCACCTCCTCATCGA CACCATGGCCAAGGTTCGCCAATTCGACCTCGCGTGGCAACTCATCACCGAAATGGACCAGCGCAGCCTCACCCCGAACC CCTCCACCTTCCTCGTCTTAATCCGCCGCCTCGTCTCCGCCGGACTCACTCGCCAGGCCGTCAGAGCCTTCAACGACATC GACGCCTTCTCCGACACCAAAACGACATCCGAGCATTTCACCGTTTTGCTCGACACGCTCTGTAAATACGGCTACGTGAA GCTCGCCGCCGAGGTCTTCAACGGGAACAAGAGGCATTGCAGGTTCAACCCCGACGTGAAAATGTACACGGTTTTGATAT ACGGGTGGTGCAAGCTTGGTAGAGTTGAAACTGCTCAATCGTTCTTGAATGAGATGGTGGAGCGAGGGATTGAGCCGAAT GTTGTTACATATAATGTTTTGTTGAATGGGGTTTGCAGAAAGGTGAGTCTTCACCCGGAGGAGAGGTTTGAGAGGACTAT ACGGGATGCGGATAAGGTGTTTGATGAAATGCGTGAGAGGGGGATTGAGCCTGATGTTACTAGTTTTTCCATTGTTCTTC ATGTTTATAGCAGGGCGCATAAGCCGCAGTTGTCGCTTGATAAATTTAGGATGATGAAGGAGCAAGGGATATGCCCCACG GTGGCGTCGTACACTTCGGTTATCAAGTGTCTTGCCTCGTGTGGGAGGCTTGAGGATGCTGAGGGTTTGTTCGATGAGAT GGTGCGGAGTGGAGTGAGCCCGTGTGCTGCGACATACAACTGCTTCTTTAAGGAGTATAGAGGGAGAAAAGACGCGGACA GTGCTTTGAAATTGTTTAAGAAGATGAAGGAGGATGGTTTGTGCTCGCCGACCGCGCATACTTATGGTGTTTTGCTTCAG ATGTTTTTGAAAGCAGATATGATTGGGGTTGTGAAGGAAATATGGAGGGATATGAAGGAGAGCGGGGTTGGACCGGATTT GGATTTGTACACGTTGTTGATACATGGATTGTGTGAGAGGAAAAAGTGGAGGGAGGCTTGCCAATTTTTTGTTGAGATGA TAGAGAAAGGGTTTCTTCCTCAGAAAGTTACCTTTGAGACCCTTTACAGGGGCCTAATTCAGTCTGATATGTTGAGAACT TGGAGGAGATTGAAGAAGAAGCTTGATGAAGAATCCATATCATTTGGCTCAGAGTTTCAAAATTATCAATTGAAGCCATA TAGGAGATGA
Protein sequence (LotjaGi3g1v0326900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEFLKLRRHCPRSAAFLPPRLALRHFTSSTDETDAELVSKILLQHHNPFHAMESSLQLHGITLTPNLLTQTLLRLKHHSK IALSLFNYAKSLPNPPLSHSSFHLLIDTMAKVRQFDLAWQLITEMDQRSLTPNPSTFLVLIRRLVSAGLTRQAVRAFNDI DAFSDTKTTSEHFTVLLDTLCKYGYVKLAAEVFNGNKRHCRFNPDVKMYTVLIYGWCKLGRVETAQSFLNEMVERGIEPN VVTYNVLLNGVCRKVSLHPEERFERTIRDADKVFDEMRERGIEPDVTSFSIVLHVYSRAHKPQLSLDKFRMMKEQGICPT VASYTSVIKCLASCGRLEDAEGLFDEMVRSGVSPCAATYNCFFKEYRGRKDADSALKLFKKMKEDGLCSPTAHTYGVLLQ MFLKADMIGVVKEIWRDMKESGVGPDLDLYTLLIHGLCERKKWREACQFFVEMIEKGFLPQKVTFETLYRGLIQSDMLRT WRRLKKKLDEESISFGSEFQNYQLKPYRR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 49 | 195 | 147 | 4.4E-14 | ||
| PANTHER | 56 | 385 | 330 | 8.1E-112 | – | |
| ProSiteProfiles | 98 | 132 | 35 | 9.131 | ||
| TIGRFAM | 101 | 133 | 33 | 0.0016 | ||
| Pfam | 102 | 144 | 43 | 1.7E-7 | ||
| ProSiteProfiles | 133 | 163 | 31 | 6.051 | ||
| ProSiteProfiles | 169 | 204 | 36 | 6.807 | ||
| Gene3D | 196 | 262 | 67 | 2.6E-17 | ||
| Pfam | 204 | 253 | 50 | 1.5E-16 | ||
| ProSiteProfiles | 205 | 239 | 35 | 12.77 | ||
| TIGRFAM | 208 | 241 | 34 | 5.1E-8 | ||
| ProSiteProfiles | 240 | 284 | 45 | 7.892 | ||
| Gene3D | 263 | 366 | 104 | 8.5E-28 | ||
| PANTHER | 268 | 442 | 175 | 8.1E-112 | – | |
| TIGRFAM | 268 | 286 | 19 | 3.2E-4 | ||
| Pfam | 272 | 330 | 59 | 2.8E-10 | ||
| ProSiteProfiles | 285 | 319 | 35 | 9.876 | ||
| TIGRFAM | 288 | 321 | 34 | 3.6E-4 | ||
| ProSiteProfiles | 320 | 354 | 35 | 12.945 | ||
| TIGRFAM | 323 | 354 | 32 | 7.0E-9 | ||
| Pfam | 343 | 402 | 60 | 1.8E-8 | ||
| ProSiteProfiles | 355 | 389 | 35 | 8.835 | ||
| TIGRFAM | 358 | 388 | 31 | 6.3E-4 | ||
| Gene3D | 367 | 492 | 126 | 1.5E-27 | ||
| PANTHER | 371 | 478 | 108 | 8.1E-112 | – | |
| ProSiteProfiles | 391 | 425 | 35 | 9.69 | ||
| TIGRFAM | 393 | 426 | 34 | 1.2E-4 | ||
| Pfam | 425 | 472 | 48 | 6.6E-9 | ||
| ProSiteProfiles | 426 | 460 | 35 | 12.321 | ||
| TIGRFAM | 429 | 460 | 32 | 6.2E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0326900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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