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LotjaGi3g1v0331300.1

Overview

Field Value
Gene ID LotjaGi3g1v0331300
Transcript ID LotjaGi3g1v0331300.1
Lotus japonicus genome version Gifu v1.2
Description Disease resistance protein; TAIR: AT5G56220.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q9M667|RPP13_ARATH Disease resistance protein RPP13; TrEMBL-Plants: tr|V7BRS9|V7BRS9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0331300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:70014071..70018294) extracted from Lotus japonicus Gifu genome v1.2.

ACAGCAATGTGGAAGACAGAGAAAGGGTACCCTGGACTGCACATAGAGAAGGACCATGTGGTTTTCTCCATCCCTTTCAA TGAGCACCCTGGAGTTGAAGCTGAAGCATAGAGAAAACGACATTTTTCTTTCCCCTTTCACCCTAAAATGGTAGAAAAAT GTTACCCTAGTGATGTGAGACTTCTAACACTCACTTACAAATGTGTTCTCTTTCATTTTCTTCGCTGATATTATTTGTTG TTTCCTTTCCAGTTTCCACAGCACTAGAAGCTTGACAAAAAAGGGCAAAAACTTGAAGCTGAAACTCATCTCCAACTTTC ACATTCAGTCACATAGCAGAGGCTTCATTAACATCAACATTATTTCTGCAAGTGCTATTGGTGAAAACACAGTACACACC TTCAGATACTAAAAGCCAAGCAATGAGTCTGTGCTTCACTATTATTGCCTAGTATTGCATTCATTGTAGGGTCATGGTCA GAACAACACAGACACACAGTATTCAGCTCTTCTGTTTCCTTGCAGCAAATAATGGTTCTCTTGAAGTCCTGCCAAAGGAC CCACATAAACATAGAGAAAGCCATTGCTGAAATTAAGAAACATTGTGAGATCTGGTCAAGCCAAAAGGCCTAAAACACTT CACTTCTTGACTGAGCTATCTTTGAAGAGTTGCTTTCATGGACAGTGAAAGAGAGGAGGAAAACCAAGGCATCAATGCTG CAATCTCTAGCACACTTACAATCAAGACCAAACAAGGTGAAGAGAGTTCAGGCAACTCAAATTTACCTTCACCAAACCTA AAGAGCTCCATAGAATCATCACCTTATGAATCTCCACTTGTCTCTCCGCCTTCATCAGCATTTGTTTCAGCACTGCAGTC CCCATATATTTCTCCAAGGGCCACAATCACAAACACCCCACCACCACAACCACCAACAATAGTAGCAACAACCACCACCA CCACCACCACTCATCCTTCAACTCCAGAAGATGTTCCTAGTAGCTCCTACACACCCCCTTCTGATCCATATGAGTTTTCT GATGACACTGCTGATACAAACTTCAAGTACATGACATGTGTTCCATTTCCAGAAGCAGCTCCTCCAAGAATCTCATTTTC ATTTCCAGTCCCTAGAGTTTCCTTTGCAAAAGGCCCTGTTTCCCCTGCTACCAATGCCAAACTCAGAAGCTGTGATGTCT ACATTGGTTTCCATGGCCAAAATCCAAACTTGATTCGCTTCTGCAAGTGGCTTAAGTCTGAGCTTGAGCTTCAAGGAATT GATTGCTTGCTTGCTGACAGAGCAAAATACTCAGATAGCCAAAGCCATGAGATTGCTGACAGTGTCATTTGCTCTGTTTC ATTTGGGCTGGTGGTTGTCACAAGCTCCAGTTTCCTCAACCATCTAAGCATGGAGGAGGTGAGATTCTTTGCTCAAAAGA AGAACTTGATCCCCATCTTGTTTGACACAGGACCTGCTGAGATCATGGCACTTTTTAACAACTCAGTTGACAAGGAATGT AAAGAGGCATTTGATGGGCTCATGAAGTGCAATGAGTTCAATCTAGAGGCTAATGATGGTAATTGGAGAAGCTGCATATC AAAAGTTTCTGGAATCTTAAAAGCAAGACTTGGTAGGAAGACTAGTGAGCAGCAGAAGGATAGTATGCAAGGGTTTGAGA GTTCATTACCTTTTCCAAGGAATAGTTACTTTGTTGGAAGAGAGAAGGAGATTATGGAGATTGAAGGTCTTTTTTTTGGA CAAGTCCAAGATCATTGTAGGACAGTCCTCAAAGGTGAAGCCTGTGGAAGTGGACAATCTGAAGGACTTGCAGATGAGGA AAGTGAACCAGTGATAAGCAAAGGTGGGAGGTACATCAGTTTGGAAATTGGGAGGAACAAAGAACCACCTTTAGAGGCTT GGGTTGAACCAGTCATTGGAAATAAGAGGTTGAAAAATAAGAAGTCAAAGAGTGGAAGCTACAAGAGCTTGAGCAGTGTT GTTTGCATTAATGGGGTTTCTGGGATTGGGAAGTCTGAGCTGGCTCTAGAATTTGCTCACAGGTACTACCAGAGGTACAA GATGGTGTTGTGGGTTGGTGGTGAAGCAAGGTATCTCAGGCAGAACATTCTAAACTTGTCTCTCAACTTGGGTTTGGATG TTGGTGCTGACTCTGAGATGGAAAGAGGTAGAGTAAGAAGCTTTGAGGAGCAAGAATTTGAAGCATTCAAGAGAATTAAG AGGGAACTTTTTGGTGACACACCCTACTTGCTGATAATTGATAATCTTGAGAGTGAAGAGGAATGGTGGGAAGGGAAGGG CCTATATGATTTGATACCAAGACATACAGGAGGGGCTCATGTGATTATCACTACAAGGTTGTCCAAAGTAATGAGCTACG ATACTATTAATCTTCCACCATTGTCACTATCTGATGCAATGATTCTGATTAGAGGAAGAAAAAGAAAAGAGTATCCAGCA GATGAGGTTGATTTCCTTGAAAAGTTCAATGAGAAACTTGGTAGGTTGAGCTTTGGTTTGTGGGTGATTGGTTCATTGTT GTCTGAACTTGCAATTAGCCCTTCTTTTCTCTTTGAAGCCATAAATCAAGTTCCACTCAATGAAGACTCAAGCACTTGTT ACATGAGCATTGCAGAAGAGCAATTGTGCAAGAGCAACCCTTTCCTCATGAAAACCCTCCTTTTCTGTTTGACAACTTTG GAGAAAACAAAAGCAAAAGGGAACAACATTCTGGCCTTGAGAATGCTTCTTGTTGGTGGGTGGTTCTCACCTGCTCCTGT TTCAGCAAGTTTATTAGTCAATGCAGTAAAGAGCATGCCTGTGGTTGAAAACAGTCTTCAAAAGTGGACTAATTGTTTTA GCCTAACATCAAGGACATGGAAAAATGAAGAAGATTCAGCAACACTTCTTGTGAAAATGGGACTAGCTCAAAGGGTTAGC CAACATGATGGATGTTGCTGGCTCAAGTTCCACCCCATAACACAAGCATTTGCTAAGAGAAAAGGTGGATTGCAATATGC AAAAGCTGCAATTCAAGGAGTGAGAAAACTAAGCAACCATGGAATCTCAGATCATTTATGGGCCTCAGCATTCCTTGTGT TTGGGTTCAAATCTGAGCCACCACTTGTGGAGCTAAAAGCAACTGACATGGCTTTGTACATCAAAAGAACAGCACTCCCA CTTGCAGTTCAAGCCTTCACCACATTCTCAAGATGCAACTCATCTTTGGAGCTCTTAAAAGTGTGCACCAATACACTTGA GGAAGTGGAGAAGTCCTTTGTGTCCCAAATCCAAGATTGGTCCTCCCATGACTCAGTGTGTTGGAAAAGGAGGTTGCAGA AAAGCCAAAAAGTGGATGAATATGTGTGGCAGGATGTGACTTTATTGAAGGCAACATTGCTGGAGACTAGAGCAAAGCTG CTAGCTAGAGGGGGGCATCTAGATAGTGGAAAGGAGTTGTGCAGAACATGTATCAGTATCAGGACTGTGATGCTTGGCCA TAACCATCCACAGACTCTGGCTGCTCAAGAGACATTGGCAAGGTTGGTGAGAATGAGGAGTAAAATATGAATGTTTGCTT TGCTTCACCAAGTGTCTTCTCCATTATTACAGTTAAAGTTTATACAAATGTTACTGTAGTAATGTGCTGATGTTTATTGT CTGCCCCTCATGAACAAAAAGCATTACTGTGCAATAATGTAGTGTTAGAGGTCATTGCTGTAATGTTGGTGAAACTGATA GTGCCAACGGAAAATTTTAGAAGTTAGCTTAAATATGTTGGTGCTCTTGAATTGAATTTCCGGGGTTTAGCTCTTGTAAA TTCAGGGAATCACTCTAAAGGGTAAAAGTAAATTATCAAAACATTTGATTGAGAAATTAATAGTTGAGATTTTAAAAACT TCACAGTTTGGTATGCAAGTGTATGATTGTATTCTCAACTGTTAACTTCTCATGGTTCGATGATTTACTTTATCTTCTAA AGTAACCTGACGGAACGAAATTTGAATTTCCCTTACCTTAGTACCAAAATTTACCAATGGTGTTTCCTTTCCTTTTTACG AAATGCAATGAAGCTGAGGTTTTCTGGAATACCAGATATCCAGTACTAACTTCACGTGGATGGACAAATCTACAACGTGT GAACTGTGAGCTGCTCAGCGAACTAGGAAATTCTATGATGTAATTACATTTCCTAATTATCTTG
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0331300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGACAGTGAAAGAGAGGAGGAAAACCAAGGCATCAATGCTGCAATCTCTAGCACACTTACAATCAAGACCAAACAAGG TGAAGAGAGTTCAGGCAACTCAAATTTACCTTCACCAAACCTAAAGAGCTCCATAGAATCATCACCTTATGAATCTCCAC TTGTCTCTCCGCCTTCATCAGCATTTGTTTCAGCACTGCAGTCCCCATATATTTCTCCAAGGGCCACAATCACAAACACC CCACCACCACAACCACCAACAATAGTAGCAACAACCACCACCACCACCACCACTCATCCTTCAACTCCAGAAGATGTTCC TAGTAGCTCCTACACACCCCCTTCTGATCCATATGAGTTTTCTGATGACACTGCTGATACAAACTTCAAGTACATGACAT GTGTTCCATTTCCAGAAGCAGCTCCTCCAAGAATCTCATTTTCATTTCCAGTCCCTAGAGTTTCCTTTGCAAAAGGCCCT GTTTCCCCTGCTACCAATGCCAAACTCAGAAGCTGTGATGTCTACATTGGTTTCCATGGCCAAAATCCAAACTTGATTCG CTTCTGCAAGTGGCTTAAGTCTGAGCTTGAGCTTCAAGGAATTGATTGCTTGCTTGCTGACAGAGCAAAATACTCAGATA GCCAAAGCCATGAGATTGCTGACAGTGTCATTTGCTCTGTTTCATTTGGGCTGGTGGTTGTCACAAGCTCCAGTTTCCTC AACCATCTAAGCATGGAGGAGGTGAGATTCTTTGCTCAAAAGAAGAACTTGATCCCCATCTTGTTTGACACAGGACCTGC TGAGATCATGGCACTTTTTAACAACTCAGTTGACAAGGAATGTAAAGAGGCATTTGATGGGCTCATGAAGTGCAATGAGT TCAATCTAGAGGCTAATGATGGTAATTGGAGAAGCTGCATATCAAAAGTTTCTGGAATCTTAAAAGCAAGACTTGGTAGG AAGACTAGTGAGCAGCAGAAGGATAGTATGCAAGGGTTTGAGAGTTCATTACCTTTTCCAAGGAATAGTTACTTTGTTGG AAGAGAGAAGGAGATTATGGAGATTGAAGGTCTTTTTTTTGGACAAGTCCAAGATCATTGTAGGACAGTCCTCAAAGGTG AAGCCTGTGGAAGTGGACAATCTGAAGGACTTGCAGATGAGGAAAGTGAACCAGTGATAAGCAAAGGTGGGAGGTACATC AGTTTGGAAATTGGGAGGAACAAAGAACCACCTTTAGAGGCTTGGGTTGAACCAGTCATTGGAAATAAGAGGTTGAAAAA TAAGAAGTCAAAGAGTGGAAGCTACAAGAGCTTGAGCAGTGTTGTTTGCATTAATGGGGTTTCTGGGATTGGGAAGTCTG AGCTGGCTCTAGAATTTGCTCACAGGTACTACCAGAGGTACAAGATGGTGTTGTGGGTTGGTGGTGAAGCAAGGTATCTC AGGCAGAACATTCTAAACTTGTCTCTCAACTTGGGTTTGGATGTTGGTGCTGACTCTGAGATGGAAAGAGGTAGAGTAAG AAGCTTTGAGGAGCAAGAATTTGAAGCATTCAAGAGAATTAAGAGGGAACTTTTTGGTGACACACCCTACTTGCTGATAA TTGATAATCTTGAGAGTGAAGAGGAATGGTGGGAAGGGAAGGGCCTATATGATTTGATACCAAGACATACAGGAGGGGCT CATGTGATTATCACTACAAGGTTGTCCAAAGTAATGAGCTACGATACTATTAATCTTCCACCATTGTCACTATCTGATGC AATGATTCTGATTAGAGGAAGAAAAAGAAAAGAGTATCCAGCAGATGAGGTTGATTTCCTTGAAAAGTTCAATGAGAAAC TTGGTAGGTTGAGCTTTGGTTTGTGGGTGATTGGTTCATTGTTGTCTGAACTTGCAATTAGCCCTTCTTTTCTCTTTGAA GCCATAAATCAAGTTCCACTCAATGAAGACTCAAGCACTTGTTACATGAGCATTGCAGAAGAGCAATTGTGCAAGAGCAA CCCTTTCCTCATGAAAACCCTCCTTTTCTGTTTGACAACTTTGGAGAAAACAAAAGCAAAAGGGAACAACATTCTGGCCT TGAGAATGCTTCTTGTTGGTGGGTGGTTCTCACCTGCTCCTGTTTCAGCAAGTTTATTAGTCAATGCAGTAAAGAGCATG CCTGTGGTTGAAAACAGTCTTCAAAAGTGGACTAATTGTTTTAGCCTAACATCAAGGACATGGAAAAATGAAGAAGATTC AGCAACACTTCTTGTGAAAATGGGACTAGCTCAAAGGGTTAGCCAACATGATGGATGTTGCTGGCTCAAGTTCCACCCCA TAACACAAGCATTTGCTAAGAGAAAAGGTGGATTGCAATATGCAAAAGCTGCAATTCAAGGAGTGAGAAAACTAAGCAAC CATGGAATCTCAGATCATTTATGGGCCTCAGCATTCCTTGTGTTTGGGTTCAAATCTGAGCCACCACTTGTGGAGCTAAA AGCAACTGACATGGCTTTGTACATCAAAAGAACAGCACTCCCACTTGCAGTTCAAGCCTTCACCACATTCTCAAGATGCA ACTCATCTTTGGAGCTCTTAAAAGTGTGCACCAATACACTTGAGGAAGTGGAGAAGTCCTTTGTGTCCCAAATCCAAGAT TGGTCCTCCCATGACTCAGTGTGTTGGAAAAGGAGGTTGCAGAAAAGCCAAAAAGTGGATGAATATGTGTGGCAGGATGT GACTTTATTGAAGGCAACATTGCTGGAGACTAGAGCAAAGCTGCTAGCTAGAGGGGGGCATCTAGATAGTGGAAAGGAGT TGTGCAGAACATGTATCAGTATCAGGACTGTGATGCTTGGCCATAACCATCCACAGACTCTGGCTGCTCAAGAGACATTG GCAAGGTTGGTGAGAATGAGGAGTAAAATATGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0331300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDSEREEENQGINAAISSTLTIKTKQGEESSGNSNLPSPNLKSSIESSPYESPLVSPPSSAFVSALQSPYISPRATITNT PPPQPPTIVATTTTTTTTHPSTPEDVPSSSYTPPSDPYEFSDDTADTNFKYMTCVPFPEAAPPRISFSFPVPRVSFAKGP VSPATNAKLRSCDVYIGFHGQNPNLIRFCKWLKSELELQGIDCLLADRAKYSDSQSHEIADSVICSVSFGLVVVTSSSFL NHLSMEEVRFFAQKKNLIPILFDTGPAEIMALFNNSVDKECKEAFDGLMKCNEFNLEANDGNWRSCISKVSGILKARLGR KTSEQQKDSMQGFESSLPFPRNSYFVGREKEIMEIEGLFFGQVQDHCRTVLKGEACGSGQSEGLADEESEPVISKGGRYI SLEIGRNKEPPLEAWVEPVIGNKRLKNKKSKSGSYKSLSSVVCINGVSGIGKSELALEFAHRYYQRYKMVLWVGGEARYL RQNILNLSLNLGLDVGADSEMERGRVRSFEEQEFEAFKRIKRELFGDTPYLLIIDNLESEEEWWEGKGLYDLIPRHTGGA HVIITTRLSKVMSYDTINLPPLSLSDAMILIRGRKRKEYPADEVDFLEKFNEKLGRLSFGLWVIGSLLSELAISPSFLFE AINQVPLNEDSSTCYMSIAEEQLCKSNPFLMKTLLFCLTTLEKTKAKGNNILALRMLLVGGWFSPAPVSASLLVNAVKSM PVVENSLQKWTNCFSLTSRTWKNEEDSATLLVKMGLAQRVSQHDGCCWLKFHPITQAFAKRKGGLQYAKAAIQGVRKLSN HGISDHLWASAFLVFGFKSEPPLVELKATDMALYIKRTALPLAVQAFTTFSRCNSSLELLKVCTNTLEEVEKSFVSQIQD WSSHDSVCWKRRLQKSQKVDEYVWQDVTLLKATLLETRAKLLARGGHLDSGKELCRTCISIRTVMLGHNHPQTLAAQETL ARLVRMRSKI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 116 116 - –
MobiDBLite
mobidb-lite
10 75 66 - –
PANTHER
PTHR32472:SF12
15 970 956 0.0 –
PANTHER
PTHR32472
15 970 956 0.0 –
MobiDBLite
mobidb-lite
89 116 28 - –
Gene3D
G3DSA:3.40.50.10140
156 288 133 4.0E-6
IPR035897
SUPERFAMILY
SSF52200
171 269 99 3.66E-5
IPR035897
SUPERFAMILY
SSF52540
337 645 309 3.46E-19
IPR027417
Gene3D
G3DSA:3.40.50.300
421 577 157 1.3E-14 –
SMART
SM00382
438 603 166 2.5E-5
IPR003593

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0331300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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