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LotjaGi3g1v0332600.1

Overview

Field Value
Gene ID LotjaGi3g1v0332600
Transcript ID LotjaGi3g1v0332600.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description KH domain-containing protein; TAIR: AT5G56140.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q9FKT4|QKIL2_ARATH KH domain-containing protein At5g56140; TrEMBL-Plants: tr|G7J0G1|G7J0G1_MEDTR RNA-binding KH domain protein; Found in the gene: LotjaGi3g1v0332600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:70176108..70185515) extracted from Lotus japonicus Gifu genome v1.2.

CTTGAAGATTTAAAAGATGACCCTTCTCATTCTCAAACTCTAAACCCTCTCTCTCTCTCTCTCTCTCTCAAACACACACA CACACACACCAACCTCAAAAGCCTACTTGCTGTACGAGGCGGTGTTGGCCCTGAGAGAGAGATCGATCCACCATGATGTC TTCCTCCGGCGCCGGCAGGTACATGGCCTTCCCGCCGTCACCGTCAGCTCCTCCATCCCCTCACCTCTCCGGTCTTCGTT CTGCTGCCTCCTCTGCTCTTGCTGAACAGGACAAGTACCCCCCTCTATCTCTTTCTCTCTTCCTATTCCTCTAGGAGCTG GATCTTCACTCCAATTTTCACTTCCTGTGTTTCATTTCTCAAATTACTGTTAAAGTTTCTTCCTTTCTCTTCATTTTTTT TGTCTTTGAACTTTGATTGACTGATTTCCATGCTTTGCTCTTGGTGGGTATTTTTTATTTATCTGGGTATTTGTTTGAAT GGTCAAATGGGTCATGCACTCTTCACTTGTGTTTTCTGTAGTTGGGTTTGTTGACTGATTGCATAAAGGTTTGATCTTTA TGACCTGATCTGCCTGTTGACTGAATTTGATCATGCAAGCAGATCTGTTGTGATGCAAATCTGATTGAAAACTAATGTGG TAATTAGTTCTTGATGAACAATGGTTGGGCATTGATTCAGATTTCAATGCTTGTCAAATTTGATAGTGTATGATTGTTGT GTTTGAGTCCATTTGGTCATTTGATTGTTTTAGCTGACTGATCATTGTGGGAAACAAGTTGATCTTGTTGTTGCTGTGCT TTTCTCCTGAGAAATGAGAACTTGTAGATGAATTGACTTCATTGCTAATTCATCATATGTCAAAGCACTATCCTTGCCCT TTTGTAGTTTCTGGTCATGATCAGACTATTTTTGCTAATTCTTGGTTTACTACTATGTATGTGGATGTCGATACTCAGAA TTTTATTACATTTACATTTGCTCTTGTGATTAACGAATGGCTACAATGTCGTACTCCAATTGTTTTGTTTTCCTTTATTT TCAGGTATTTAACTGAGTTATTGGGAGAACGTCATATTCTTGGTCCCTTCATGGCTGTACTTCCACACTGCTATCGATTG ATCAATCAAGGTAAGATTCGTTTCTCTAAACAGAGGTGAATTAGCCACTCCCCCCATCTTCTCATTCTTTAGTTTTTGTA TGATAGAATCAAATGGCTTAACTCTTGGGCTCTTGCGCCGTAAGTTTCATTTTTTACATTTGATTTTTTTTATCATTTTT CTTTGTTTCATGTAAGTGTTGTATATCTTGTCTTATCCATGAGCAAACCCCTCTCCTTACAAGTGAGATCTTCAAACCTC TCCTGAGGTGTAAATTTGAAGAATATATTATGAGAGCCGCACTTACCCATGTGGGCCCCCCATCTCCCATCAGTGTGCTG GAGACGATTCTTTCTGTATCTTCGACTTTATCTTCTCCCTCTGACAGAACAAATCTCTTATCTCCATATTTACTTTCTAG CAGGTCTCTCAACTATTATCTTAAAATAAGACATTTCTTCTGCTCTTTGCTACCATAGCCACTTCTACATCAAACTTGCA ACCATTCTTATTGTTTGAAAAGATCTCAGATCCCTCATACTTGTGACTGGGAAGAGTCTCTAAGGAGAAGTTGCATCTTG ATCTGAGCTTCTTCCCATATATAATATGAAGAGCTAGATTCTTAACTGCTTTCAACGTATAGTCTAAAAAAGTGAGGGAA ATGATGAAGGCTTAAGATAACTACGCGGTTATTAGTGACGTAAGTTTAGGATTTTTTAAAAATGTTATTGAGTGTACTTT TTCATAAGACCAGAAGATATTTTAAGTTTTTAGTTGAATGATTGGATTATAGTTTTGGATAATGAAGAAGGAAAAATAAA GAAGAAAGGCTTAGAATTATGATATGATGCAAAAGACATAACACTAACCCTTATTTACCATGTCAAAATTGTGAGTCACC TCATGTCGTAGGATTTGGCGTTTTACGAGTTTTGCATCCATCTGCAATTACATTTGCGACCAAGTAAGATTGTTAGATCG TGTGATCTGCGTTTTTTCCGAGCTCATGACCTATGACTCTGTGTTTGACTGGGTAGGTTTCTCGACCTGCGTTGAAAAAA CCCTTGATTCCTCCCCAAATCATACCTAACCTGACCACTCTTCTCATTTGTTCATTCCATCAATTCTGTCTCTCTTCGTG CAAGTTTTTCTGAGAGGCGCTTTCTGAATCTCTCCCAATCACGCACTAAACTCCCCATCTCTGCTGTCTCGGCGCTTCAG CTTGAAGCTTTTGCACTACTGTCAACACTCTCCACCATCTTTGATCTCTCTGTTCTGATTTTTCCTTGGCCTTCAAACCC CTCTCTCTCTGCGGCTTCTGCTAGGTTCCTTTGCTGCCCGTCTTTGTCCAAGTGGCGGAGGTGCAGGAGTAAGGGTCTAA GGGAGAAAAAGGTAGAAGGCGGCTGTGTGTTTTGTCTCCTAGGTTATAAAAATTGAATTATCAATAATACCCCAACTACT AGAACTGAAAAATCAATAATACCCCCAACTGATAGAACTGATAAACAAAAAAATGCCATCAACTAATAGCTCCAACATTC TAATTGCTAGGGCAATTATGACTTTATGAACCGTCTTCTCTTTCAAAAAACCCTAATCCCTGTAGCAGCAAAATAGCGAC GGCTGCGATTTTGGCCGATAAAGCGGCTGAGACTGCCGTGATCGCTACCTCCGCTCCACCCCGCACCACTGCGATTGCAC TGCTTTCGCGCGCCATTGACAAGTATGATATTAGTTATAATAATTTTTTAATTAAAATACAGGTCTTACAGGCTGTGTTA TTTAAGGTTTTTTACCCCTCCCAATCCTAGGTAGATACCGAACTCCTAATTCTAATCAAATACGGAAAATAATCAGGATA AGTACTCAACACTTGATTGTAATTAAGTACGGTATGAATGTTAAAAACTTGGCTGAAAAAGTTCTGGTGGTGGGCGAGAA GTTTTTGAATGACTGGGAAAAGTGCCTGATTAGGCTGTTATGGTTGGGACTCGGGAGAATTCGTGATGGATATTTTCATG GTGGTAAGGGCTTGCTGAAGGTGTCACAGCGGCAGAGGGAAAGAAGGGCCACTTAAGAAGAGAGATTTTGGGTGATAGTG ACATTATTGTAGTAAAATCCCAAACATTAGGAAACTTAGCAGCAGAATAGTGACTAAAAGAGTGATATAAGGTAGGAGGA AAGGGAAGAAATATCAACTCCTTATTATTGTTAGATTTTTATTATATGATAAAGAAGGCAAAACATTAACCCTTATTTTC CAATACTACGCTCATAATCCTAATCAAATATGTAAACTAATTTATGATAATCACTTCACTTGACTGCAGCAGTAAGTAAC CTGCATTAATTTATTTTTTGAAATCGGTTAATGTGCAGACTGCAGAATGCTTTATACTAGAAAAGTAATAGAAGAGGATA AATATACATATTTTCCACGTTGTTTTACAAAATTGCACTGAGTTGTGAAGAGTTTTATGCAGTTACCGTTTATAGATGTG TGTGCATATTTGATCACTTATTAACTTTTGCATTTGTTGATAAATCTTTGAGTTTGTTTAGACTGAGAAGTGTTGAGTAT GTATCATACATAGGATTCTGAAGCAGTGGTGTGACTGGGAATTAGTTTGAAGTATTTGATGAGATTTTTTTATTAAGGGA GGGGGGGTGGAGATGGGTTTTAAGTTAAGGAAACATGTTAGCTTGTTGTTTCCTCTACATGGTTTAGCAGAAACATTTTC ACCAGCTATAACATAATGTAGTTATTTAGAAGGGGTGAAGATTGTAAATGGAATAATATTGAAAGTCCAGGTCAAGAACC CTAGCTTCCAACCTTACTTTACGGTTGTGTTTGATGGAAAAACTGCTTATTTTCTTCTAAGGGCCTATTAAAAGGTCTCA ACAAACATAAAATCATAACCATTCATCATATAAGGCTTAGTTTAGTTAAATCATAGTCAGTCAAGTTCTCAAAATCAGAT GACTTTTTAATTTACTCAATAAAACTAGCGACAGGGTGTCAATATTTTGGAGTCTACCAAAAGTTTATGACACGAGTGCT CTAAATTTGAAGAAAAAACTTGTAAGTTCTTATTGGAGTGAATTAATTGGTGCTGAAACTAAGGCACTTAACGATCATGG TAAGTTGTCTCATTCACCTTATAATCCATGATCCTTTTCTATTATAATGAGTGTGTTTGGATGGAGGAGATTTGATAGAA AGGGAGGACGAATGAAGGATGATTCAAGTTGACATTTACCTCTTTTGCAATTTTTTTTGTTATGTGAAGAAGAAACAGGG ATTTCGTGTAGCACTAAAACCTTCCTGTATTAATATCAATGAACATTTTAGAGTTCTGTGAGGATTTTAACATCCACAAA GAGAAGGAAACTACTACTTAATCCCTCATTCTCTTAAAGAAACTATAACTTAATACCTCGTTCTCTTCCCTATCTTTCCC CACATTTTCTTTCTCTTTCCCCCCAGAACTTCCAGTTGGATAGTAATTGCATGGTTATTATAATCTTTGTGAATTGACTA AGTAAATGTTTTTATAATACTTCCTTTTTTACTTGAGTGGAATGTTTTATTGATAAATCAGTGGTTAAGCAATTGACAAT ATTAGATGCTATTAGTCTTTTTCTTATCTGAACTTGATATACCAATAGAGGGTTCATTCATGTTCTTTCTATGGAGTTAG TTTGTGTGTAAAGGTTCTAGGATTTGAGTTGTTAGTTTTTCTTATATGAAAGTAATGAAAGGAAAATTTTCCAGCTGTTG TATGTGATTGCTGCTTTATGGTATTGTTATGGTTTGATATAATTGTTTATACTCTTGAGAGTTTCTATGTATAAACAAGC CCTGAAGTTTCAATGGAAGTACATGTTTTATTTTTATTATGTTGGAAGTACATGTTTCAATGGTTTGCTAACCAAATCTT TTTGAAGTGACTTTTCTGTTAATGTGAAATGTGAATGTCTACCTATTTAAATATTTACAAGATGACACTTGACTGTATTT GTTTTCTTTACTATTAGAGTACTACCATAAAAAGTTGGAACATATCTAATTGAGATAGCATTTATTTTTTACTGACTCAG CAAACATCCGTGTTGTCTATCGATTATATAGTGACTGCTAACTTGTTAACAAATGCTGACTGGTACATGTTATTCTTGAA AATTGACATTTTTGGAGCAGAAATTTTGCGTGTAACCACGCTGTTGGGGAATGCATCAGTTTTAGGTCAAAGTAGGCTTG AACATGCGAGCCCCCTGGCTACTGGAGGAATATTTTCAAATGGAGGTGCAGATGTGAACGGTTGGGCATCAAGATTTCAA TCAGAAGTATGGATACTAACCATTAACATAACTTCATTTCGTTCTAATTCTGTATTTTAGAAGTATTTCTGACAATTTTT GCTAACTCATGACATTTATTCGAGTGATTGTAGTTCTAATTGTTTTTGGCAGGTAGTGAAAAGCTAACAACAGGCCCTGA CAATTAATCTATAGCTTAGTTTCTACAGGAACCCTGATTATGGATCTAATGTTGATTTCTTCTCTGTATTAAGATAAAGC AGATGTCAATACTTGATGGCATTGCAATTTTCTACAAAATTACAGATGTGATGAATAGTGTCAGATGGATAAATCTGAAT GCAATCACATGGGAATCTTGATTTATTTATGGTAGAAATAGAATGCTAACACTAGCTACATGAAGTGTTTGCCTGTGAAA TGTGAGACAGGAAGTTCTATGAGGATTGAGGAACTAACTTGTTGGCTAAGTTGCTCAAATCAGTCTTATTTTCCTAATAC CTTTCTGGTTTGAGTTCAGCTGTAATTCCAAACTTCAGTTAACACATTATTTTCTGAGACCTTGATCCTCTTTGATTGAC ATAGTCAGGACTCAGGATATGTTTGTACACTTTCCTTGTTATGTGTTTTGAACTTCTTTTGAATTTGAGAAGCCAGTGTA TCCCTTTTTGGTGATCTCTGTGGCCTTTGATAGAGTAATAAATTTAATGTTCATTTTCATGCCAATAAATAGACTGTCAT ATCTGTAAATGCAATTGACATTGGAATGAAAACATGCAGATGCCAAGTTTGTTACAGTCCTCGGCAACACCAAGTTGGCT GAGTCCACAAGGTAGCTCATCCGGTCTTGTTGTTAAAAAGACTATGAGAGTCGACATACCTGTGGAAGTATATCCTAATG TATGAATGATCATATCCTGCTTCTGTATATACTCAACTATTTTCCATATCCAGAAATAATATAATATCAACATTATTTTA TTGCAGTTTAACTTTGTTGGTCGCCTCCTAGGCCCTAGAGGAAACTCTCTAAAGCGCGTAGAAGCAAGTACTGATTGTCG TGTCTTGATCAGGGGCCGAGGTAGCATAAAGGATCCAGCTAAGGTAAGAATAAAAATATGATTTTTAATTTAATTTGTAG CAAGTCTACATGATCATTTTGATGAAGATAAAGTTACTGTACTGTAACCTTAAAAGCTGTTTGACATTGTTATTGTACTG TGTTGCACATTATCAGATCAAAGTGTTTACCCTATCCTTGGGTGAATGTTTTTCTATTTATTTATTCAGAGATCTATGAC TTTCTTCTGGTTCTTGTCAGAACAATTATATTAATTTGTATTGCATTCTATATTTTCTGAATGTATGAGCGGTAATGCTT GTGGTTTATCCAATCAGCTCAGTGAATCCAATGTTATTGCCTATATTGCTTAATGTTCAGTATATTTTAGTTGGAAATTT AGGTTCTAGTTAACAAATTTTAATCTAATTTGTAGGAGGAAATGATGAGAGGGAAACCTGGGTATGAGCATCTGAATGAA CCTCTCCATGTTCTAGTTGAAGCAGAATTTCCAGCTGAAATCATAGATGCCCGCTTGATGCAAGCACGTGAAATACTTGA AGATTTGCTTAAACCTGTGGTATGTTCTTGTGCATTCAATTAAGATTTGGCAGCATACGCAACTTCATAGGGATACTGTT TGTGCTAACTATTTGAAGTTTTATCTTCCAGGACGAATCTCAGGACTACTACAAGAAGCAGCAGCTTCGGGAACTAGCAC TGCTCAATGGCACTCTTCGCGAGGAGGGTTCTCCTATGTCTGGTTCTGTTTCACCCTTTCACAACAGCCTTGGTATGAAA AGGGCCAAGACCAGGGGGTAATTTGTCCTGAAGGGTGAAAGGGTTTTTGTGGTTGTCTTCAGTTTCTACAACAGCACTTG CCACCGGTGATGTTGTCAGTGAATGCCCTAAACTCCCATCCTGGCAACATATTGCCAGTTCAGACCTGTTCTATGTGCAG TGTGTTTATATTCAGTTTGGGAAGGTTTAAAGATGGTAGCGCGTAGTAAAGGTCCAGTTGAATTTGGTGAATTTACCTTT TTTATGTTGGTTAGGTGGTTTGGTTAGATTATCACCAAATCTTTCATATTATTATGGGTTATATTTCAGCTTGCATCGAT AGTTTTGATATGGTTTCGGGAACTGATGATGATGATGTATGGTTTGTTCCCAGATTGAGGCAGATGTATTATCTGCTTCA ATGCGTGTATGGGTGACATTTTATAGTATCAAATGTAGATTATAGATTTGTGGATTTTTTCCTCCCAAACAGTCAGCTTA ATATGCATGTTCCGAATTGCCTTTCCTTACTGGCCGATTCTTTTCCAAAGTACATTATAGCATGTTTGTATCAGCTTCCC TTTCACCAGGATCAACTTTGGAATCCATAAGCTACTCACAAAAGTTCCTTTCCATAATTGATTCTTGCTTCAGAATCAAT TGTAGAAGGATTTCTTAGTGTGAAGACTTCATCCTGGCAGTGATATTTTCTTTGCCATTGATTAATGCCTTTCTTTTTGT CTAGTAAATGGTGCGAAGTGGGTCATCCAATTCTCCAAGACAAGGTTTTAGTGGTATGCTGAGGAGACTAGTAGAGGCCT AATGCGCCAATCTAGATGATTACTACACAGGTCCAAATTGTAAGTAGTTTATTTAGTTGCAGCTACTCTACTAGCTCAAA GGCGCCATGAGATCTCTTCAGGGGGGTGATGCCCTCCGAAAGAGATTTTAGATGTCTCCTTGGAGGTTCAAACAGGTGAC CATGAGGAAGGTGACAATTTTCCTTCTCGATTATTTCCAATCATGTGAACTTGACCTTGAATTTTTCAATTCAATAGAGT CATAGAGACAGGGTTGTTCCATGTACTCTTGTTTTATATCAGAAATTTTCACTACTTCAGTTGTGGGATTATGTGTTAGT TAAGAAAATTTCTCATCTGAGTATCAATTTCAGAGTTGAAACTCCTGATATTGTAAGGTTTTTTTTTTTTAATTATTGTG AGTATGACTGTTACTAATAGAAAAAAAATTGTTAAGTTAGTTCTTAGCAATTTATTATGGGAAATTTTATATCTCAGAGC GGGGAACTGAATTTGTTTCCACTGGAAGCTTCTTCATCTTTAGTTTCCAAAAAACAGGTCTGGTACCTTATACCCTTGGT TTCAAGCTTCCTTTACTATTCTGGTACGTGAGAAAAGTTGTGATTTGTGTGGACTGCAAGTATCAAAGATTGTGTGTTGA ATGCATGTTGGCCACTTTGAGTTTGTGATCGTTGGGTCCCCTATGGTACACAAGGAAAAAGTTGTGCAAATGTACACAAA GTGGATCTGACCCCCTATAGTGGGGTCCAAAAAATAAACTGTGTCGTTATATTTGGCGGCGGACGGCGGTGATGTGTGGC TCGTTATGTGGGGGGTTTTGGTTCTGTCCAGTTGGGGTTGTATCAAGATTCAACGTGTTTCTATTTTCTATTTTCGTCCC AAGATTCAACGTGTTTCTGCTGTGCTATTTTATTCATCTATTCATACTCATAAACCAGATTTTCATCTTTAATTGTGTGT TTCAAATTTCTGATTTGATTGTGATTGTAGTACTTTAATCGCTGATTTGGATCGGGTTTATCCAGATTACCCTCCGACAA GATGGTCATGAAGCCATGGTTGATTGAAAATCAAATGGTGAAGGAAACCGAAGGAAGTGGATCTGACATGTAGCTCAGTT TTTTTATATATTTATGATGAGTACGGTGGTAATCTTGGGCTAGGAATTTGGATCTCAGAAGAGAGATATGCACACCATAA ACTAAGATGATGATGATGAAGATTGAAGAGGTTTGATGTTTGATGAATGGTGGCACATCTTTTGAATAAGAGGATGAAGA TGAAGAGTTTTGATTTTTTTTTCGATGAAGAGGCTTGATGAATTGGGG 

CDS sequence (LotjaGi3g1v0332600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATGTCTTCCTCCGGCGCCGGCAGGTACATGGCCTTCCCGCCGTCACCGTCAGCTCCTCCATCCCCTCACCTCTCCGG TCTTCGTTCTGCTGCCTCCTCTGCTCTTGCTGAACAGGACAAGTATTTAACTGAGTTATTGGGAGAACGTCATATTCTTG GTCCCTTCATGGCTGTACTTCCACACTGCTATCGATTGATCAATCAAGAAATTTTGCGTGTAACCACGCTGTTGGGGAAT GCATCAGTTTTAGGTCAAAGTAGGCTTGAACATGCGAGCCCCCTGGCTACTGGAGGAATATTTTCAAATGGAGGTGCAGA TGTGAACGGTTGGGCATCAAGATTTCAATCAGAAATGCCAAGTTTGTTACAGTCCTCGGCAACACCAAGTTGGCTGAGTC CACAAGGTAGCTCATCCGGTCTTGTTGTTAAAAAGACTATGAGAGTCGACATACCTGTGGAAGTATATCCTAATTTTAAC TTTGTTGGTCGCCTCCTAGGCCCTAGAGGAAACTCTCTAAAGCGCGTAGAAGCAAGTACTGATTGTCGTGTCTTGATCAG GGGCCGAGGTAGCATAAAGGATCCAGCTAAGGAGGAAATGATGAGAGGGAAACCTGGGTATGAGCATCTGAATGAACCTC TCCATGTTCTAGTTGAAGCAGAATTTCCAGCTGAAATCATAGATGCCCGCTTGATGCAAGCACGTGAAATACTTGAAGAT TTGCTTAAACCTGTGGACGAATCTCAGGACTACTACAAGAAGCAGCAGCTTCGGGAACTAGCACTGCTCAATGGCACTCT TCGCGAGGAGGGTTCTCCTATGTCTGGTTCTGTTTCACCCTTTCACAACAGCCTTGGTATGAAAAGGGCCAAGACCAGGG GGTAA 

Protein sequence (LotjaGi3g1v0332600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MMSSSGAGRYMAFPPSPSAPPSPHLSGLRSAASSALAEQDKYLTELLGERHILGPFMAVLPHCYRLINQEILRVTTLLGN ASVLGQSRLEHASPLATGGIFSNGGADVNGWASRFQSEMPSLLQSSATPSWLSPQGSSSGLVVKKTMRVDIPVEVYPNFN FVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPAKEEMMRGKPGYEHLNEPLHVLVEAEFPAEIIDARLMQAREILED LLKPVDESQDYYKKQQLRELALLNGTLREEGSPMSGSVSPFHNSLGMKRAKTRG 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 9 294 286 2.1E-164
PANTHER 9 294 286 2.1E-164
Pfam 41 75 35 1.6E-7
SMART 143 239 97 4.7E-5
CDD 146 268 123 9.24562E-58
SUPERFAMILY 148 268 121 4.34E-32
MobiDBLite 268 294 27 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0332600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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