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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0336200 |
| Transcript ID | LotjaGi3g1v0336200.12 |
| Related isoforms 14 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Splicing factor u2af large subunit, putative; TAIR: AT1G60900.1 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B; TrEMBL-Plants: tr|A0A0B2SQ90|A0A0B2SQ90_GLYSO Splicing factor U2af large subunit B; Found in the gene: LotjaGi3g1v0336200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:70635265..70637882) extracted from Lotus japonicus Gifu genome v1.2.
AATGTCGGGCTACTAGCCCCACTGTGCTGACAATGGGCGTGAGCCGACTTCTGTAGCTTTTATGTCCACGGAGGAATCAA TGCACCTGTTTTTGGTGGGTCTTGTTCGTCTTCAACTGGAAACCGTTAGCTACTTTGGTAGACTTGCAAATATTATTTCT AAAGCTTCTTAATAAAGTGCTCTTTTAATCTTATTGATATACTATATGCAATGAGGTTAAATTATGCTTCAGCTGATGCC AATTGTAGCAGGAGTCATTTGATACTCATATAATTGTATTGCAAAAGATTTGAATAATGAATTTATTCTGAGATGCTCAT ACCTTTATTTGCAGGTCAGATCCCCGGTGCAAATCCTGCAATTCCTGGAATGTTTCCAAATATGTTTCCATTGGCTACAA GTCAGGTACAAATCCTGCTATATGTTTCCAAATATTCTTAACTCGTTATGCAGGATGACTTTTTATTGAATTTCACCGTT TTCTCTTGTCTTTTTATAGATGCAGCCATTTAGTGCTCTTCCTGTCATGCCAGTTCAGGCTATGACTCAACAGGTAAATG GATTTTTCTGGTGATGAGATTTTCTTCCTTTCTCTTTTAGCATTATTTCCCATTATGGCCTTTGTTTGATGTTCTGAATG TACAGGCTACAAGGCATGCTAGGCGAGTGTATGTTGGGGGCCTTCCTCCTACAGCCAATGAGCAGGTAATATATAGTAGT TCAGAATGATCTTTCATGATTGGTTTCTCAATTAGAATAAGTAGATTATCTGCTAAATTAGGTACTTGCCAAATAGTTTT TTGTGTTTATCAAGTGATCTAGCTTGCATTTTTTACTGCATGCTTCTGATACTTGTGAGTTCCTCGGGTTGAGGAAGCAA TGCTGGTAGGACTTGACCACAGTGGAAAACAAGATGGATAATATATATTTTTTGGCTTGTTTTTTTTCCTGAAACTTTTG GGTTTTTTTTTGCTTCTAACTTTGATACATTGCAGTCAGTTGCAACTTTCTTTAGTCAAGTTATGGCCAAGATTGGGGGA AACACTGCTGGTCCAGGTACATTATGATCTTAAATGAATTTTGCCATTTTGGTGACTCTACGGGCTTTCCATTTGATTCA GTTTTATTTGTGCAGGTGATGCGGTGGTCAATGTTTACATTAACCATGACAAAAAGTTCGCTTTTGTGGAGATGAGGTCT GTTGAAGAAGCTAGCAATGCTATGGCTTTAGATGGGATTATTTTTGAGGTATTTTTTTCTTTCCTAACTGAATCTTGGGT TTCTGTTTTGGTTTTGTAAATCATTTGTCATAATCCAATTTTCATTTTTAATTCAGGGGGCACCTGTTAAGGTCAGGAGA CCTACTGATTACAATCCTTCTCTGGCTGCTACCCTAGGCCCAAGCCAACCTAACCCAAACCTTAATCTGGGTGCTGTTGG TTTAACACCTGGATCTGCCGGTGGACTTGATGGACCTGATCGAATTTTTGTGGGAGGACTTCCTTACTACTTCACTGAAA CACAGATCAGAGAGCTTTTAGAGACTTTTGGTCCTCTTCGGGGTTTTGATCTAGTGAAAGATAGAGAAACTGGGAATTCA AAAGGTTATGCATTTTGTGTTTACCAAGATCTTGCAGTTACGGACATTGCCTGTGCAGCTCTCAATGGAATAAAAATGGG AGATAAGACACTTACAGTTAGACGAGCTAATCAAGGTGCAAACCCTCAGCAGCCTAAGCCTGAGCAAGAGAGCATTTTAA TGCATGCGCAGCAGCAGATTGCTCTACAGGTCTGATGGGTTTGTTACTTATGTTTTGTGTTACAAATATCTTCATGCACA TATTTAATTTTCTAATTGATGTACACTTCTGAATTCTGCAGAAACTTATGTTACAGCCAGCATTAGTGGCAACAAAGGTG GTGTGTTTAACTCATGCTGTTTCTGCTGATGAGCTCAAAGAAGATGAGGACTATGAAGAGATTCTTGATGATATGAGACA GGAGTGCTCCAAATTTGGTAATTTCTGATTTAGTTTGCTTGTCTTTCACTGCAAACTATAATACATTCATATTAATTTTT CTGTGTTATTTTTTATTTGTTTTACAGCCATTTGTAGTCCCACATTCTCCCATAAAGAATCAGGCCTAACTTACAGACTG AAGCCTCCATAACCTTCACTCTTTGTTCACACATACTTGTTTTCATTGCATGCTTTTGAAAATTTGTGTGCATGTATGAT ATATCGGTGTATTTGTTCTAACACAATCTGCAGGTACTTTGGTGAATGTGGTGATCCCTCGCCCACCACCCGATGGTGAA CAGTTGCCTGGAGTTGGAAAGGTTTGTTCTTTTGACCTTATTCTGGAAGTTTTTTCCCCTTGTCCTCCAAGCATAATCTG CTTAAAAAGGTGTTTTGCTTTTGGGTAGCAATATTTCGTACATGCTATGTATTGTTTAAAATACTTTTTTGTACTTGCAG GTGTTTTTGGAGTATGTTGATGTTGATGGTGCTACAAAAGCCCGTGCAGGACTGAATGGACGCAAATTTGGCGGGAATCA AGTAATAGCTGTCTTCTATTCGGAGAATAAATTTGCGCAGGGAGATTATGAAGGCTAA
CDS sequence (LotjaGi3g1v0336200.12) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCACGGAGGAATCAATGCACCTGTTTTTGGTGGGTCTTGTTCGTCTTCAACTGGAAACCGTTAAATTATGTCAGAT CCCCGGTGCAAATCCTGCAATTCCTGGAATGTTTCCAAATATGTTTCCATTGGCTACAAGTCAGATGCAGCCATTTAGTG CTCTTCCTGTCATGCCAGTTCAGGCTATGACTCAACAGGCTACAAGGCATGCTAGGCGAGTGTATGTTGGGGGCCTTCCT CCTACAGCCAATGAGCAGTCAGTTGCAACTTTCTTTAGTCAAGTTATGGCCAAGATTGGGGGAAACACTGCTGGTCCAGG TGATGCGGTGGTCAATGTTTACATTAACCATGACAAAAAGTTCGCTTTTGTGGAGATGAGGTCTGTTGAAGAAGCTAGCA ATGCTATGGCTTTAGATGGGATTATTTTTGAGGGGGCACCTGTTAAGGTCAGGAGACCTACTGATTACAATCCTTCTCTG GCTGCTACCCTAGGCCCAAGCCAACCTAACCCAAACCTTAATCTGGGTGCTGTTGGTTTAACACCTGGATCTGCCGGTGG ACTTGATGGACCTGATCGAATTTTTGTGGGAGGACTTCCTTACTACTTCACTGAAACACAGATCAGAGAGCTTTTAGAGA CTTTTGGTCCTCTTCGGGGTTTTGATCTAGTGAAAGATAGAGAAACTGGGAATTCAAAAGGTTATGCATTTTGTGTTTAC CAAGATCTTGCAGTTACGGACATTGCCTGTGCAGCTCTCAATGGAATAAAAATGGGAGATAAGACACTTACAGTTAGACG AGCTAATCAAGGTGCAAACCCTCAGCAGCCTAAGCCTGAGCAAGAGAGCATTTTAATGCATGCGCAGCAGCAGATTGCTC TACAGAAACTTATGTTACAGCCAGCATTAGTGGCAACAAAGGTGGTGTGTTTAACTCATGCTGTTTCTGCTGATGAGCTC AAAGAAGATGAGGACTATGAAGAGATTCTTGATGATATGAGACAGGAGTGCTCCAAATTTGGTACTTTGGTGAATGTGGT GATCCCTCGCCCACCACCCGATGGTGAACAGTTGCCTGGAGTTGGAAAGGTGTTTTTGGAGTATGTTGATGTTGATGGTG CTACAAAAGCCCGTGCAGGACTGAATGGACGCAAATTTGGCGGGAATCAAGTAATAGCTGTCTTCTATTCGGAGAATAAA TTTGCGCAGGGAGATTATGAAGGCTAA
Protein sequence (LotjaGi3g1v0336200.12) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTEESMHLFLVGLVRLQLETVKLCQIPGANPAIPGMFPNMFPLATSQMQPFSALPVMPVQAMTQQATRHARRVYVGGLP PTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSL AATLGPSQPNPNLNLGAVGLTPGSAGGLDGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVY QDLAVTDIACAALNGIKMGDKTLTVRRANQGANPQQPKPEQESILMHAQQQIALQKLMLQPALVATKVVCLTHAVSADEL KEDEDYEEILDDMRQECSKFGTLVNVVIPRPPPDGEQLPGVGKVFLEYVDVDGATKARAGLNGRKFGGNQVIAVFYSENK FAQGDYEG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| TIGRFAM | 21 | 406 | 386 | 4.1E-156 | ||
| PANTHER | 21 | 407 | 387 | 3.9E-231 | – | |
| PANTHER | 21 | 407 | 387 | 3.9E-231 | – | |
| SUPERFAMILY | 55 | 158 | 104 | 4.7E-17 | ||
| Gene3D | 67 | 164 | 98 | 1.1E-29 | ||
| CDD | 71 | 153 | 83 | 1.99113E-41 | – | |
| ProSiteProfiles | 72 | 155 | 84 | 13.004 | ||
| SMART | 73 | 151 | 79 | 7.3E-14 | ||
| Gene3D | 165 | 283 | 119 | 1.8E-21 | ||
| SUPERFAMILY | 189 | 277 | 89 | 2.42E-23 | ||
| ProSiteProfiles | 192 | 270 | 79 | 15.494 | ||
| CDD | 192 | 268 | 77 | 7.0408E-44 | – | |
| SMART | 193 | 266 | 74 | 7.8E-21 | ||
| Pfam | 194 | 263 | 70 | 2.7E-17 | ||
| Gene3D | 302 | 407 | 106 | 9.4E-30 | ||
| SUPERFAMILY | 303 | 400 | 98 | 6.04E-18 | ||
| CDD | 306 | 394 | 89 | 6.38806E-42 | – | |
| ProSiteProfiles | 313 | 399 | 87 | 9.047 | ||
| SMART | 314 | 395 | 82 | 0.052 | ||
| Pfam | 331 | 391 | 61 | 8.5E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | MRNA processing | Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide. |
Expression pattern of LotjaGi3g1v0336200.12, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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