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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0336200 |
| Transcript ID | LotjaGi3g1v0336200.2 |
| Related isoforms 14 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Splicing factor u2af large subunit, putative; TAIR: AT1G60900.1 U2 snRNP auxilliary factor, large subunit, splicing factor; Swiss-Prot: sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B; TrEMBL-Plants: tr|I1JZD4|I1JZD4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0336200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:70632314..70638149) extracted from Lotus japonicus Gifu genome v1.2.
TATAACCTAGCTCGCTAGGCCCGTTAAGAGACAAAAATAAATAACAGCGAGATGAAGAAAGAGGGTTTATGAATAAGAAA AATTCGATATCACTCGCGAAAGAGGAGAAAAACAAAGCACAGACTCTAGAGAGAAACAGAGAGCAAGAGAGAGAGAGACA TGGCTGAATACGAAGAGCGATACGAAGAAGAGGTTCACATCAACTCTCATGCTCACGCCGATTCCTCTCCGCAACCACCG GCCGCCGACGCCGCCAACGACGATCTCACCGACTCCAAATCTCATGTACTCTCTCTTCCTACGCCGTTTCAGTTTCGCAC TCAATTAGGGTTTTCCATGCATCTTTTTCTCTAGGGTTTCGATTAGGGTTTTTCTGTTTTTCGCTATTTTGAATCGAAAC GCAACTAGTAGGTGTAGGTTTTGTTGAGATCTCGGATTAGGTTTTGTTTGTAATTCAATTTTGTAATTAGAGTTGTATGC AATTTGTTCTTTGCTGTTTTGTTATCTGTAGTATATGTTAAATTTGGTTGTGTCTTGAATTTACCTATTGGCTATTGGTT GGTTCTTGTATGCGAATCTCTAATTCTGCTCCTGCTATGCATATTATTCACCATAGTTTGGAATTTGGATGCTAGGTTAA TTTGTATACTTTTTGATTAATTGATTGTGTTTTGGCAGCATGGATCTCGTGATTACGACAGAGAATCATCAAGAAGCAGA GAAAAGGAGCGAGACAAAGGAAGGGAAAAGGATAGAAAGAGGGAAAAAGGGAGGGACAGGGATCGGGAAAAAAGCAGGGA CAGGGATAGGGATCATGAGAGAAGCAGGGACAGGGACAGGGATAGTGAGAGGAGCAGGGATAGGGACAGAGATAGGGAGA GAAGCAAAGATAGGGAACGTGGTGATCGGGATGGGGAGAAGGAAAGGGACCACCATCATAGAGACAGACATAGGGATCGT AGTGAGAGAAGGGAAAGAGGGAGAGATAGAGATGATGATGATTTTTACAGAAGCCGGGACAGCGATAGGTAAAAGTTTAT TTGGACTTGGAGCTTGAGAAATTTAATCAGCTTCTACTTTACTGTGAAGTTCTTATTGCATGCAATCCATTGTCTTATAC TATAAGAATTCACAAATTTATATCCAAAACATTAGCAATTATTTTCATTAGTTTTTCCATTCATATTCTTTTTTCAATTT TTATCTTAAATTGTTTTATGGTACAGACGAAGGGATTATGATAGAGAGGATAGGCATAAGCGCAAGTCTCGTTCTCGATC TAGATCAAAGTCAGTGGGTCGTTCCGAGCATAGATCAAGGTCACGTTCACGCTCAAAAAGGTATGTCTTTGAAAGATCCT TAAGATTTAGTATGCAGATGTGCAGTTGTGCTATATGATGCATGCATCTGGTGTTTGGGAAATTCTAAGTTCTGTTTTGT AAAATATAAAATAGTTAGATGTGCAAAGTGGAACTGGTATGGTGTTGTCAATGCTTGGAAGACAGCTATAACTAATGATT TTCATAGTTGGTTCTAAAGCCATTTTATGTCAGTTTTTATTTCTGTTACATCCTTAATAATTTTAGTTTGTTAGAATCAC TCTCTAGTTCCTTATTGTTTCACCAAATTTTTAACCTTGATAAGACATGTTGACTTGACATTTTTTATCTGGCAATCATT CATAATCATACGTCCTTGTGTTAGTCTTCTCCTTCCGCATTATAACTTGCACAAGTCTTTTCTCTCAATTTCACCAAAGC CTGAAATTCATCCATGTCATGATAATAACAGTTAACGGAATTTTAACCCTGTTGGCCTTCAGGTCTTACAAATTTTAGAG CTATACTGACTTAACTAAAAGTTTCTGAACTATAGGAACTTAATTAAACCTTTGATAAAATTAAAGGCAGAGGTGTAAAG TAACTTAACCTTTCAACTTAAGGGAACACAACATCACCTGAAGTATAGCCAAATGATAAGGGCATCTATCCCTATTTCAA TTTTTATCAGTCGCTGAAGGGCTCCTTGCTGTTTAATGATTTATATATATTAATCTGTTCTAGATAATATCTGATACAAC TAAATTTTACATTTAATATGGCTTGAAAATTTACTTGCATTTGTGGAAACTAATTTAATTTTATTGAGGTATATAAGTTT CTGTTGGTATAACTATAGTTAAGCTGTTTGTAATCGTAGTTAGAATTCTGTTTCCAGATTCTGTTCAGTTGTAAAGACTA TATAAGAGTATCCACTTGTATTCTTTTCAATTTTATTTTATTGAGGTATATATAGTCCAGCATGTATTATACTTAGTGAT TTAGTTCTTAGTTAGTTTACTATCTTACCTATAGTTAAGTTTCTGTTGTATAACTATAGTTAGGCTGTTTGTAATCGTAG TTAGAATTCTGTTTCCAGATTCTGTTCAGTTGTAAAGACTATATAAGAGTATTCACTTGTATTCTTTTCAATTATTGTAA CCATCTTCATTTAAAATATTTCTATCAACTATGTTCTCTCTGTTTCTAAACATATTTACTTACAGCAAAAGGACTAGTGG TTTTGATATGGCCCCCCCTGCTTCTGCAATGTTGGCTGGTGCTTCTGCTGTTACAGGTACATGTACATCTACTCATGTAT ATATTACAAACATTTTTAACCTTTTTTTTTTTTTGCTGCATTGGAAAAACAAACATTTTTAACCTTAACTGCTTTCTTTC TTTTTTTGGTCCTAGTATGGAAAATTATCAAATTGCATGGTGTAACTTGGTAAGCCAAGTTCAGTCACTATCAGTATATA ACTTTCACAACTGGTTTCCATGGTGTGTAGTTTTGTCTTTCTTTTTACTTAGTGATATAATTCTGGAACTAAAAGGTGTT TTGGTTTTTTTGTCTTGTTTTTGGTGTTTGTTTGTTTTGTTTCTATGTCTTGTCATATGTTCTAAGAAGGCAATGTCGGG CTACTAGCCCCACTGTGCTGACAATGGGCGTGAGCCGACTTCTGTAGCTTTTATGTCCACGGAGGAATCAATGCACCTGT TTTTGGTGGGTCTTGTTCGTCTTCAACTGGAAACCGTTAGCTACTTTGGTAGACTTGCAAATATTATTTCTAAAGCTTCT TAATAAAGTGCTCTTTTAATCTTATTGATATACTATATGCAATGAGGTTAAATTATGCTTCAGCTGATGCCAATTGTAGC AGGAGTCATTTGATACTCATATAATTGTATTGCAAAAGATTTGAATAATGAATTTATTCTGAGATGCTCATACCTTTATT TGCAGGTCAGATCCCCGGTGCAAATCCTGCAATTCCTGGAATGTTTCCAAATATGTTTCCATTGGCTACAAGTCAGGTAC AAATCCTGCTATATGTTTCCAAATATTCTTAACTCGTTATGCAGGATGACTTTTTATTGAATTTCACCGTTTTCTCTTGT CTTTTTATAGATGCAGCCATTTAGTGCTCTTCCTGTCATGCCAGTTCAGGCTATGACTCAACAGGTAAATGGATTTTTCT GGTGATGAGATTTTCTTCCTTTCTCTTTTAGCATTATTTCCCATTATGGCCTTTGTTTGATGTTCTGAATGTACAGGCTA CAAGGCATGCTAGGCGAGTGTATGTTGGGGGCCTTCCTCCTACAGCCAATGAGCAGGTAATATATAGTAGTTCAGAATGA TCTTTCATGATTGGTTTCTCAATTAGAATAAGTAGATTATCTGCTAAATTAGGTACTTGCCAAATAGTTTTTTGTGTTTA TCAAGTGATCTAGCTTGCATTTTTTACTGCATGCTTCTGATACTTGTGAGTTCCTCGGGTTGAGGAAGCAATGCTGGTAG GACTTGACCACAGTGGAAAACAAGATGGATAATATATATTTTTTGGCTTGTTTTTTTTCCTGAAACTTTTGGGTTTTTTT TTGCTTCTAACTTTGATACATTGCAGTCAGTTGCAACTTTCTTTAGTCAAGTTATGGCCAAGATTGGGGGAAACACTGCT GGTCCAGGTACATTATGATCTTAAATGAATTTTGCCATTTTGGTGACTCTACGGGCTTTCCATTTGATTCAGTTTTATTT GTGCAGGTGATGCGGTGGTCAATGTTTACATTAACCATGACAAAAAGTTCGCTTTTGTGGAGATGAGGTCTGTTGAAGAA GCTAGCAATGCTATGGCTTTAGATGGGATTATTTTTGAGGTATTTTTTTCTTTCCTAACTGAATCTTGGGTTTCTGTTTT GGTTTTGTAAATCATTTGTCATAATCCAATTTTCATTTTTAATTCAGGGGGCACCTGTTAAGGTCAGGAGACCTACTGAT TACAATCCTTCTCTGGCTGCTACCCTAGGCCCAAGCCAACCTAACCCAAACCTTAATCTGGGTGCTGTTGGTTTAACACC TGGATCTGCCGGTGGACTTGATGGACCTGATCGAATTTTTGTGGGAGGACTTCCTTACTACTTCACTGAAACACAGATCA GAGAGCTTTTAGAGACTTTTGGTCCTCTTCGGGGTTTTGATCTAGTGAAAGATAGAGAAACTGGGAATTCAAAAGGTTAT GCATTTTGTGTTTACCAAGATCTTGCAGTTACGGACATTGCCTGTGCAGCTCTCAATGGAATAAAAATGGGAGATAAGAC ACTTACAGTTAGACGAGCTAATCAAGGTGCAAACCCTCAGCAGCCTAAGCCTGAGCAAGAGAGCATTTTAATGCATGCGC AGCAGCAGATTGCTCTACAGGTCTGATGGGTTTGTTACTTATGTTTTGTGTTACAAATATCTTCATGCACATATTTAATT TTCTAATTGATGTACACTTCTGAATTCTGCAGAAACTTATGTTACAGCCAGCATTAGTGGCAACAAAGGTGGTGTGTTTA ACTCATGCTGTTTCTGCTGATGAGCTCAAAGAAGATGAGGACTATGAAGAGATTCTTGATGATATGAGACAGGAGTGCTC CAAATTTGGTAATTTCTGATTTAGTTTGCTTGTCTTTCACTGCAAACTATAATACATTCATATTAATTTTTCTGTGTTAT TTTTTATTTGTTTTACAGCCATTTGTAGTCCCACATTCTCCCATAAAGAATCAGGCCTAACTTACAGACTGAAGCCTCCA TAACCTTCACTCTTTGTTCACACATACTTGTTTTCATTGCATGCTTTTGAAAATTTGTGTGCATGTATGATATATCGGTG TATTTGTTCTAACACAATCTGCAGGTACTTTGGTGAATGTGGTGATCCCTCGCCCACCACCCGATGGTGAACAGTTGCCT GGAGTTGGAAAGGTTTGTTCTTTTGACCTTATTCTGGAAGTTTTTTCCCCTTGTCCTCCAAGCATAATCTGCTTAAAAAG GTGTTTTGCTTTTGGGTAGCAATATTTCGTACATGCTATGTATTGTTTAAAATACTTTTTTGTACTTGCAGGTGTTTTTG GAGTATGTTGATGTTGATGGTGCTACAAAAGCCCGTGCAGGACTGAATGGACGCAAATTTGGCGGGAATCAAGTAATAGC TGTCTTCTATTCGGAGAATAAATTTGCGCAGGGAGATTATGAAGGCTAATTGTGTTTATGTCACTTGAAATTGTATCTTA ATTGAAGTTTTCTTAGTGAGGATTGTCATTTGTATTAATTACTTGGTAAGCTGAGTTGTGGGCACATATAGTACTTACAC TGTTCTTTTTTCGGTAGGAGTTTTGCATGATACAGAATTTGTTGATAGGTTTGACTAGTATACTTGGGCCCACCTTGTCC CTTGATAAATTCGTTATGAGCTTGAGTGAGGTTTGTTTGAACTGGACTTCTGCAATGCATTAATCATATTAGAACT
CDS sequence (LotjaGi3g1v0336200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTCCAAATATGTTTCCATTGGCTACAAGTCAGATGCAGCCATTTAGTGCTCTTCCTGTCATGCCAGTTCAGGCTAT GACTCAACAGGCTACAAGGCATGCTAGGCGAGTGTATGTTGGGGGCCTTCCTCCTACAGCCAATGAGCAGTCAGTTGCAA CTTTCTTTAGTCAAGTTATGGCCAAGATTGGGGGAAACACTGCTGGTCCAGGTGATGCGGTGGTCAATGTTTACATTAAC CATGACAAAAAGTTCGCTTTTGTGGAGATGAGGTCTGTTGAAGAAGCTAGCAATGCTATGGCTTTAGATGGGATTATTTT TGAGGGGGCACCTGTTAAGGTCAGGAGACCTACTGATTACAATCCTTCTCTGGCTGCTACCCTAGGCCCAAGCCAACCTA ACCCAAACCTTAATCTGGGTGCTGTTGGTTTAACACCTGGATCTGCCGGTGGACTTGATGGACCTGATCGAATTTTTGTG GGAGGACTTCCTTACTACTTCACTGAAACACAGATCAGAGAGCTTTTAGAGACTTTTGGTCCTCTTCGGGGTTTTGATCT AGTGAAAGATAGAGAAACTGGGAATTCAAAAGGTTATGCATTTTGTGTTTACCAAGATCTTGCAGTTACGGACATTGCCT GTGCAGCTCTCAATGGAATAAAAATGGGAGATAAGACACTTACAGTTAGACGAGCTAATCAAGGTGCAAACCCTCAGCAG CCTAAGCCTGAGCAAGAGAGCATTTTAATGCATGCGCAGCAGCAGATTGCTCTACAGAAACTTATGTTACAGCCAGCATT AGTGGCAACAAAGGTGGTGTGTTTAACTCATGCTGTTTCTGCTGATGAGCTCAAAGAAGATGAGGACTATGAAGAGATTC TTGATGATATGAGACAGGAGTGCTCCAAATTTGGTACTTTGGTGAATGTGGTGATCCCTCGCCCACCACCCGATGGTGAA CAGTTGCCTGGAGTTGGAAAGGTGTTTTTGGAGTATGTTGATGTTGATGGTGCTACAAAAGCCCGTGCAGGACTGAATGG ACGCAAATTTGGCGGGAATCAAGTAATAGCTGTCTTCTATTCGGAGAATAAATTTGCGCAGGGAGATTATGAAGGCTAA
Protein sequence (LotjaGi3g1v0336200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFPNMFPLATSQMQPFSALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYIN HDKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGGLDGPDRIFV GGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRRANQGANPQQ PKPEQESILMHAQQQIALQKLMLQPALVATKVVCLTHAVSADELKEDEDYEEILDDMRQECSKFGTLVNVVIPRPPPDGE QLPGVGKVFLEYVDVDGATKARAGLNGRKFGGNQVIAVFYSENKFAQGDYEG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 18 | 18 | - | – | |
| TIGRFAM | 1 | 370 | 370 | 5.3E-154 | ||
| PANTHER | 1 | 371 | 371 | 4.6E-223 | – | |
| PANTHER | 1 | 371 | 371 | 4.6E-223 | – | |
| SUPERFAMILY | 20 | 122 | 103 | 4.03E-17 | ||
| Gene3D | 31 | 129 | 99 | 9.0E-30 | ||
| CDD | 35 | 117 | 83 | 9.1261E-42 | – | |
| ProSiteProfiles | 36 | 119 | 84 | 13.004 | ||
| SMART | 37 | 115 | 79 | 7.3E-14 | ||
| Gene3D | 130 | 247 | 118 | 1.6E-21 | ||
| SUPERFAMILY | 153 | 241 | 89 | 2.15E-23 | ||
| CDD | 156 | 232 | 77 | 3.46681E-44 | – | |
| ProSiteProfiles | 156 | 234 | 79 | 15.494 | ||
| SMART | 157 | 230 | 74 | 7.8E-21 | ||
| Pfam | 158 | 227 | 70 | 2.3E-17 | ||
| Gene3D | 266 | 371 | 106 | 8.0E-30 | ||
| SUPERFAMILY | 267 | 364 | 98 | 5.1E-18 | ||
| CDD | 270 | 358 | 89 | 3.19394E-42 | – | |
| ProSiteProfiles | 277 | 363 | 87 | 9.047 | ||
| SMART | 278 | 359 | 82 | 0.052 | ||
| Pfam | 295 | 355 | 61 | 7.3E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | MRNA processing | Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide. |
Expression pattern of LotjaGi3g1v0336200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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