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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0337100 |
| Transcript ID | LotjaGi3g1v0337100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Deoxycytidine kinase; TAIR: AT1G72040.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|P27707|DCK_HUMAN Deoxycytidine kinase; TrEMBL-Plants: tr|U5U2L0|U5U2L0_PHAVU Deoxynucleoside kinase family; Found in the gene: LotjaGi3g1v0337100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:70782035..70787572) extracted from Lotus japonicus Gifu genome v1.2.
CTAAAACCTTGTGTCTGTTCCTTTGTCCCTAATTTGTTCCTTGAAAACTGCGCAGCAGAGGAGACACTACACTAAAACCC TTCTTCTATCCAACAACAGAGCATGAGTTTGTGTCGCGCGGTCGCAGCCACCACACTCTGAACTGCAAACAGATAACCTG AAATGCTCAGAACACCACCGCCACCACCACCACCACCATCATCTTCTTCTTCTTGTTGTTGCTATTATGCAGAAACTGCT TCGTCCGTTTCCATCTTGTTCATTTCTCCCAGTCACAGTTCTCTCTGTGCCTCTGGGTAACGCTCCATTCCACGCTTCCC ATAGAGCTTGCAACTTTATGACTGCAGCAATGGCAGCTTCTTCTTCTTCTTCTTCACTCACACCCTCACTTCCCCATAGC AGAAACCCTTCTTCTTTCTCTCTCAAACCCTCTTCTTCTCGATTCTCGTACAACACTGCTTGCTGTGTCAGAAGGTGTTT TTGCCGGCTAACCCTAACCCACAAACCCAGTGGAAGAAGTAGGAGTAGGAGTGGGAAGACAACGCCGTCTTGGCTTCTCC TTAACCACTCTCCAAATGCTGCCTCATTGTGTTGTTCTGCTTCTGATGCTTCTTTTCCTGTTGCTGAGGAAGGTGAAGTG AAGAGGGATGATGGTTGTGCTGTTGAGTTAACAGAGGAGGTGGAGGAGGAGAAGGAGGAGAAACCCTCTTCCTCTTCTTC CTCTTCCAACAGCTTCAGACTCAATAGGAGGCAAAAGGGTTCTTCCTCTTCCATCCCACCTTCTAATCCTGATTTGTTGG CCATTCCTGGTGTTGGTCCCAGAAATCTCAGAAAGCTCGTTCAGAAAGGTATTGAGGGTGTCGCTCAACTCAAGCAACTC TACAAAGATAAGGTACCCCCTCTTCATTTTTTTAGTACGTTCTTTTCAACTTAGATTTGTATTTTCTGTTTTGGGTATGT AACTGTTTGTCCTTTCTTGTTCTGCTATAGAGACTAATTGGCTGCCTCAAGTTATTGTACTAATACCCTTTTAAGTTTAT CTGCTATTAAGAAAACAAAGAGCAATGTTGTGGTGGAGTTTTTGACAAATTTGTTTTGTTGGGTGTAGTTCTTTGGCAAA TCTAGTGAAAAGATGGTTGAGTATCTGCAGAGTTCTGTTGGAATAATCCACAAGAACCATGCTGAAAGCATAACTACTTT CATAAAAAAGAGTGTTGAAGGTGATGAGGAGAAGGAAGATAAATCCTCGATGCCGTCACACCAGAAGAAACGCCTCACGT TCTGTGTTGAGGGTAACATCAGCGTTGGCAAGACTACCTTCCTTCAGAGAATAGCCAATGAAACTATTGAATTGCGTGAC CTCGTTGAGGTGGTTCCTGAGCCAATTAGCAAGTGGCAGGATGTTGGACCTGACCACTTTAACATTTTGGATGCTTTTTA CGCTGAGCCACAAAGGTATGCCTACACGTTTCAGAACTATGTATTTGTGACTAGGGTGATGCAGGAAAGAGAGTCATCTG GTGGAGTGAAGCCTCTTCGTTTGATGGAGAGGAGTGTTTTCAGTGACAGGATGGTTAGTATTCACTCCATTGAATCTACC CTCGTTTTTCTTGTGTAAAACCTTTTTGCTTGATGGTCCTTCTGTGTTACTCTATTTATTTATGTGCTTGGGGTATTGGA GTGACCGAGTGAGGTTGTTAGTCCACTTTTTTCTTTACATATGAAAGATAATTTTTTCTTTCAATATCTTACCTGTTTGA AAATGAAAGTGATTGATGGATTTGAATCTATGAAGTTCTTTCTTTTTACTGTTTGGTTTGATGTAAGAGGAAGGAAGTTG TGTTTTGAGAGTTTAAGAGGCTTATGTATTTTATCCCACTGTTCAATGAAGGTTTTTGTACGAGCCGTTCATGAAGCCAA TTGGATGAATGAGATGGAGATCAGCATTTATGACTCATGGTTTGATCCTGTTGTGTCTTCTCTGCCTGGACTTATTCCTG ACGCTTTTATCTACCTTAGGGCAAGTCCTGATACTTGCCACAAGAGAATGATGTTAAGGAAAAGAGCTGAAGAAGGTGGA GTCTCCCTAGACTATCTGCGTGACCTCCATGAAAAGCATGAAAGCTGGTTATTTCCCTTCCAAAGTGGTAATCATGGAGT ATTGTCGGTCAATAAACTGCCCCATGATGTTGACAACCCTTTACACCCTGATATAAGAGACCGTGTGTTTTATCTGGAGG GTGATCACATGCATTCCAGCATTCAGAAGGTACCAAATTTGGAAATCCAGTGTCTGAATTGTCTGAATCTTTTATTTGTT ATAATAAACTGGTTTAACCATTTTACTTACAAGCAGGTTCCTGCATTGGTTCTGGACTGTGAACCCAATATTGATTTCAG CAAAGATATTGAAGCAAAGAGAGAGTAAGATGTCTATCTTTTACTCAGATATTTGTTTTAATTTCTGTAAAATGGACTAA ACTTTTGTCCTATCGGATGCTTATTTGTGTCTTTTAGAATATTATCATTCTTGTTGATCTAGGAGTCTTATTATGATTTG ATTTTTATTGAGCATGGCTTTAACTAGTCGTATATTAGGTTCCAATTTCACGTTATGGGAATCAAATGTTGGGTTTATAT GAACCTCAGCTCCGGACACCACAATGGCTAATTTTTGTGGTGTAGTTTCATATCAGTTGGTATTAGAGCCTTCCTTCATC TCTCAGTTAGTGAGGCAAGCTTTTGTAGTCTTTGCTTGGAACTAATTATGGGACTAGACTATTACACAGCCAACCTGCAT ACGTGCTGAGGGTGTGCAGCATGGTGTAATCAGGTTCCAATTGCAAGGTACTGGACTCAGTCCCGTGTTTGAAGTATGGG ATTCCAGTGTAGAGTTTATTTGTGGGACTGGCTCCTCAAAAGTGAGGACTCACTTTTTAGGGTAAAGTAAGTCTTCACAA CCATTGATTGAGCTGTTGTATTGACCTTTCAAAGTAGGTAATCACTATTAACGGTTGTGATGACTTACCTTTACCCTCAC CTTAGAGGAGCCAAATACTGTCTCGATAGCTATGAAGCACGGATTCGGACACGGACACGGGACACGGACACGGGCGGGAA CGCCGACACGGCTAAACTCCAAAAAGTAGGATACGGGGACACGGCTTATATATATATATTAGAGATAAAAGATAATATAT ATTGAAAATAGGAGTCAAAGTACAAAAAGCAAGAGGTTATAACCTCTGCAACATAAAACGGTTACAAGAAAGATACATAT GCAGAAATAAAAAGAAAACAGAAGCAACAATAGCAGATAGATGACATGAATGTGAAGAGCCAGCTTGTGATTGAGCCCAA GTCTAGAACATGCACGATTACATAGAAAAAACAGGACAGTGCAACTATGAAATCAGCAGTCCAACAAGATGAATTCAAAG CTCAGAGTATATATATCTATATACATATATATATATATAAACATGATAATATGTTCACAAGATCTGATTTGATAAGGTTT TTTTGATTTTTAATTAGACAAGGTTTGTTTTATTTTTAATTTATCTTTGTTTTAAAGTCAGAAAATAATATAAAAAAAGT ACAAGTGTCCCCTATATGTGTCCAGCCACAAAGGTGTGTCGGCTCAATAAACAAGCCGTGTCCAAGCCGTGTCTGAGCCA AGAAAGAATAATTTTTTATTCAGACACGCCCCGGATGTGTCCGACACGTGTCGGTGGCGTGTCCGTGTCGTCCGCGTGTC CGACACGCGGACACGCCTCTGTTTTAAAGTGTCCGTACTTCCTAGCTAGCAACTAACCCAGATTGTTGGTATAAATACGG AGTACTATTCTATTGTTTGTAATTTTAACCGTTAAAACTATACTGCACTATTAATTTTCATCGGGCCATATGATACTTAA GTTTTTACTTGGCTTGTTTTACGTTTAAATAATCAAAATTGCAATTTGATGGCTATGTTTAATTTCCCAACAAAAGGTCT CTCTAATGTGTTTCATAAATTAAACTTGGTGAATAGAAGGTGAGGGGCATTTTCTTTCCTTTGCCTTTGAATTAGAAACA TAAAGGAGAAAGATAAAGGTTAATCTGTTCTATTGCAATATAATATGGCATTGTTTTTATATTAATGCTGAGTTTAAAGT ATTAAACAGACTGCTTATTTCAGAACACAAATCAAAAAGTGCACTATGTTTTGAACTATTTTGCATTAAACTGGTAAATG ACTTTCTGGTAGGTATTCTCATGAATTTTATGCTGTGATCATCATCTCAAATTATTTGGGGGAGGGAGTGGAGTTAATGT TTTGTACTAGTTAGGCTAAGCAGAATATTCCCCATTTGTGCATTTGTTACCCAGTCACATGTAATATTCTAAAGCTATGA ACCTATGATCACTGCTACAAATTTTACTTCTTTATTCATTTAGGTAGTCACTGTTTTTGGAGGCTTAAGTAGGATTGTTG CAAAAAACATGTTTATCTTCTTTCATGTGTATCATCAGACTGTTTGTCTTTGCTTTATTCAGCAAAATTCTTTGATGTTA CTATGCTCATTTTTTGAATACTAATGGGGGGAGGGGCTTATCTACAAGAATTTACTGTATTAAACTATTAGTCTAATAAT CACAAACACATTATATTTTTTTGTCGCCTATTGTGCAGATATGCGCGCCAAGTTGCAGAGTTTTTTGAATTCGTCAAGAA AAAGAACGAAGTTTCATCCCAGGAAGCTGTTAAAGGTGGGAAAAATGGCCAAGCTCCACCACAGGTGCTGCTACCTCATG AAGGTGGCCTATGGCTACCTGGTGGAAAGCCTTTTCCCCAGTCATCCCTCAAACCTTTGGACTTCAGACGAGCAATGTCA TTTGCGTCTGGTAGTGGCTCATAGCCTTGTGATTCACGGGCTAGATATATGCTATGCTAATGGTCCCTGGTTGACGTGTT CATGTTTTTTCTTGCGTGTAAAGATCTTTAACTCGGACCTTGACTGATGTAAAAAAGGTAGTAGTATTTTATCAAATGCT TCGGTAGTTGCTACTGTACTGCTTGGTTGTAGTTTTTTTCTCTTTAATTAGGAAAAAATTGTCTTGTGATGGATCATTTT ATGTATCCCTTTTTGTGTTCAATGGGTAATTTTCTGAGCATTTGATTTTGCTCTCATGTTTATATGTCCGCACCCAGGTT CTGTCGATAAGGTTGGGTTCTGTGGTACAATATCATTTGGTATTGTTAACAAGCCTGAAGTAAAGATTCTAGTGAGAAAA TTAAAGGATGGATATTAGCCGGCCAAGTTTTGAACCCGGTTACCATTTTTTCGGACAGAGGTGGTTTAAGGTCATCTATC CATTCCGTGTTAATTTGAGCTTCTACTGACATTTTTTTTAATTATTGATCTATTTTTTTATTCATGTGAACAACATGAAG TCCATGAACCACCGGCGTTAACCAGATTTACTAGTTTTTTTACCAGTTTAGTTTCTCTGGTTCTCAAGTTATTCTGCATT GGATGTAGACCTGTCCGG
CDS sequence (LotjaGi3g1v0337100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGAAACTGCTTCGTCCGTTTCCATCTTGTTCATTTCTCCCAGTCACAGTTCTCTCTGTGCCTCTGGGTAACGCTCC ATTCCACGCTTCCCATAGAGCTTGCAACTTTATGACTGCAGCAATGGCAGCTTCTTCTTCTTCTTCTTCACTCACACCCT CACTTCCCCATAGCAGAAACCCTTCTTCTTTCTCTCTCAAACCCTCTTCTTCTCGATTCTCGTACAACACTGCTTGCTGT GTCAGAAGGTGTTTTTGCCGGCTAACCCTAACCCACAAACCCAGTGGAAGAAGTAGGAGTAGGAGTGGGAAGACAACGCC GTCTTGGCTTCTCCTTAACCACTCTCCAAATGCTGCCTCATTGTGTTGTTCTGCTTCTGATGCTTCTTTTCCTGTTGCTG AGGAAGGTGAAGTGAAGAGGGATGATGGTTGTGCTGTTGAGTTAACAGAGGAGGTGGAGGAGGAGAAGGAGGAGAAACCC TCTTCCTCTTCTTCCTCTTCCAACAGCTTCAGACTCAATAGGAGGCAAAAGGGTTCTTCCTCTTCCATCCCACCTTCTAA TCCTGATTTGTTGGCCATTCCTGGTGTTGGTCCCAGAAATCTCAGAAAGCTCGTTCAGAAAGGTATTGAGGGTGTCGCTC AACTCAAGCAACTCTACAAAGATAAGTTCTTTGGCAAATCTAGTGAAAAGATGGTTGAGTATCTGCAGAGTTCTGTTGGA ATAATCCACAAGAACCATGCTGAAAGCATAACTACTTTCATAAAAAAGAGTGTTGAAGGTGATGAGGAGAAGGAAGATAA ATCCTCGATGCCGTCACACCAGAAGAAACGCCTCACGTTCTGTGTTGAGGGTAACATCAGCGTTGGCAAGACTACCTTCC TTCAGAGAATAGCCAATGAAACTATTGAATTGCGTGACCTCGTTGAGGTGGTTCCTGAGCCAATTAGCAAGTGGCAGGAT GTTGGACCTGACCACTTTAACATTTTGGATGCTTTTTACGCTGAGCCACAAAGGTATGCCTACACGTTTCAGAACTATGT ATTTGTGACTAGGGTGATGCAGGAAAGAGAGTCATCTGGTGGAGTGAAGCCTCTTCGTTTGATGGAGAGGAGTGTTTTCA GTGACAGGATGGTTTTTGTACGAGCCGTTCATGAAGCCAATTGGATGAATGAGATGGAGATCAGCATTTATGACTCATGG TTTGATCCTGTTGTGTCTTCTCTGCCTGGACTTATTCCTGACGCTTTTATCTACCTTAGGGCAAGTCCTGATACTTGCCA CAAGAGAATGATGTTAAGGAAAAGAGCTGAAGAAGGTGGAGTCTCCCTAGACTATCTGCGTGACCTCCATGAAAAGCATG AAAGCTGGTTATTTCCCTTCCAAAGTGGTAATCATGGAGTATTGTCGGTCAATAAACTGCCCCATGATGTTGACAACCCT TTACACCCTGATATAAGAGACCGTGTGTTTTATCTGGAGGGTGATCACATGCATTCCAGCATTCAGAAGGTTCCTGCATT GGTTCTGGACTGTGAACCCAATATTGATTTCAGCAAAGATATTGAAGCAAAGAGAGAATATGCGCGCCAAGTTGCAGAGT TTTTTGAATTCGTCAAGAAAAAGAACGAAGTTTCATCCCAGGAAGCTGTTAAAGGTGGGAAAAATGGCCAAGCTCCACCA CAGGTGCTGCTACCTCATGAAGGTGGCCTATGGCTACCTGGTGGAAAGCCTTTTCCCCAGTCATCCCTCAAACCTTTGGA CTTCAGACGAGCAATGTCATTTGCGTCTGGTAGTGGCTCATAG
Protein sequence (LotjaGi3g1v0337100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQKLLRPFPSCSFLPVTVLSVPLGNAPFHASHRACNFMTAAMAASSSSSSLTPSLPHSRNPSSFSLKPSSSRFSYNTACC VRRCFCRLTLTHKPSGRSRSRSGKTTPSWLLLNHSPNAASLCCSASDASFPVAEEGEVKRDDGCAVELTEEVEEEKEEKP SSSSSSSNSFRLNRRQKGSSSSIPPSNPDLLAIPGVGPRNLRKLVQKGIEGVAQLKQLYKDKFFGKSSEKMVEYLQSSVG IIHKNHAESITTFIKKSVEGDEEKEDKSSMPSHQKKRLTFCVEGNISVGKTTFLQRIANETIELRDLVEVVPEPISKWQD VGPDHFNILDAFYAEPQRYAYTFQNYVFVTRVMQERESSGGVKPLRLMERSVFSDRMVFVRAVHEANWMNEMEISIYDSW FDPVVSSLPGLIPDAFIYLRASPDTCHKRMMLRKRAEEGGVSLDYLRDLHEKHESWLFPFQSGNHGVLSVNKLPHDVDNP LHPDIRDRVFYLEGDHMHSSIQKVPALVLDCEPNIDFSKDIEAKREYARQVAEFFEFVKKKNEVSSQEAVKGGKNGQAPP QVLLPHEGGLWLPGGKPFPQSSLKPLDFRRAMSFASGSGS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 30 | 30 | - | – | |
| Phobius | 1 | 9 | 9 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 30 | 30 | - | – | |
| Phobius | 10 | 21 | 12 | - | – | |
| Phobius | 22 | 30 | 9 | - | – | |
| Phobius | 31 | 600 | 570 | - | – | |
| MobiDBLite | 49 | 71 | 23 | - | – | |
| MobiDBLite | 149 | 194 | 46 | - | – | |
| PANTHER | 150 | 593 | 444 | 1.1E-234 | – | |
| PANTHER | 150 | 593 | 444 | 1.1E-234 | – | |
| MobiDBLite | 162 | 187 | 26 | - | – | |
| Gene3D | 183 | 239 | 57 | 3.8E-5 | – | |
| SUPERFAMILY | 275 | 541 | 267 | 5.7E-44 | ||
| CDD | 280 | 479 | 200 | 2.41237E-64 | ||
| Pfam | 280 | 534 | 255 | 9.1E-50 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0337100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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