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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0341300 |
| Transcript ID | LotjaGi3g1v0341300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectinesterase; TAIR: AT5G27870.1 Plant invertase/pectin methylesterase inhibitor superfamily; Swiss-Prot: sp|Q3E8Z8|PME28_ARATH Putative pectinesterase/pectinesterase inhibitor 28; TrEMBL-Plants: tr|A0A0B2P0U9|A0A0B2P0U9_GLYSO Pectinesterase; Found in the gene: LotjaGi3g1v0341300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:71601316..71603941) extracted from Lotus japonicus Gifu genome v1.2.
TAGGTGTTCTCTCTTTATAAATAACACTCCACTTTGCATACTAAATCAGAAACACCCATTCTTCTGAGGACTTTCAAAGA GAATCCTCATTGCCTCATTTTCAACAGGAGCTTCTTAACTCAATAATCAAAATGTTTGGGGGAGATGCAGAGAAGGGAAA AAGAATCGCCATAATTGGTGTATCAACCTTGTTATTGGTTGCTATGGTTGTGGCTGTCACAGTTAGCGTGAACAAGAGTG AAGCAAACAATGATATAGAAGACAACATGAAGAACCATGTTGCTACCACGGTAAAAGCAGTCCAAACCCTTTGCCATCCC ACTGATTACAAGGAAGAATGTGAGGAAACCTTGATAGCAGAGGCTGGAAACACCACTGACCCAAAAGAACTTGTAAAAAT TGCCTTCAACATTACAATCAAGAAAATTGGTGACAAACTCAAGGAAACTGAGTTGTTGCATGAGGTTGAGAAGGATCCAA GAGCCAAGATGGCACTAGACACATGCAAACAACTTATGGATCTTTCAATTGGGGAGTTAACAAGGTCAGTTGATGGAATA GACGAGTTTCATCTCAACAATTTGGACAAAATTCTCATGAATGTAAAGGTTTGGCTTAGTGGTGCTGTCACATACCAAGA TACATGCTTGGATGGGTTTGAGAACACCACTAGCGAAGTTGGGATGAAGATGAAGGAGCTATTAACAACAAGCATGCATA TGAGTAGTAATGCCTTGGCTATTGTCTCGGAACTTGCTGACACCATATCAGATTGGAATGTCACAAAGTTAACCGGGCGA CGCCTCCTCCTTCAGGATTCTAGGACTCCCTCATGGGTTGATCTTGGTCATCGTAGACTCATTGATTCCAAGAAAAATAC TTTCAAACACAAGCCTAATGTGACTGTAGCCATAGATGGCAGTGGAGATTTCAAGAGCATCAATGAGGCATTGAAGAAGG TTCCTGAGCATAACAAAAATCCATTTGTGATTTACATCAAGGAGGGAATTTACCAAGAGTATGTTGAAGTTACCAAGCAT ATGACCCATGTTGTGTTTTTGGGTGATGGTGGAAAAATTACACGAATCACTGGAAACAAAAACTTCATTGATGGGATTAA CACCTACAGAACTTCAACCGTTGGTATGTCTTCTCTTAATTGAATAACTATCATACCTTAGCTTATCAACACTAATAAAG AGTGACAACATTTCGTTTTTTTTTGGTTCACACTAAATATAAATAAAGCATGCATCCATTAAGTGTAATATACATTTTAA AAATTGCAAATCAAACCCATAGGATAATTTTATGTAAGAACTGTGATTAATGCACAAATTAATATATGCAGCTATACAAG GAGATCATTTTGCTGCCATCAATATGGGTTTTGAAAACTCTGCTGGCCCCCAAAAGCATCAAGCAGTGGCATTAAGAGTT CAAGCTGACAAGACCATCTTCTTCAATTGCTCAATGGATGGGTACCAAGATACACTTTATGCCCACACCATGCGTCAATT CTATCGGGATTGCACCATTTCGGGTACCATCGACTTTGTCTTTGGTAATGCGCTAGCCGTTTTTCAGAATTGTACTTTCG TGGTCCGAAAGCCATTGGAAAACCAACAATGCATTGTAACTGCACAAGGCAGGAAAGAAAGGCAACAACCATCAGGAATA GTCATTCAAGGGGGTTCCATTGTGTCTGACCCTGAGTTCTACCCTGTGAGATTTGACAATAAGGCTTACCTAGCTCGTCC ATGGAAGAATTACTCTAGAACTATCATCATGGACAGCTATATTGATGATTTGATTCATCCTGATGGCTATCTACCATGGC AAGGATTAGAAGGTCCATCCGGCATGGACACTTGCTTCTATTCTGAGTACCACAATGTAGGTCCGGGTTCAGATAAATCA AAGCGTGTAGATTGGGCTGGAATTTGGAATCTCAATTCAAAAGCTGCACATTTGTTCTCCCCATCCAAATTTTTCCATGG AGATGACTGGATTGAGGCTACCGGGATCCCTTACTTCCCTGAGATTCCCAAGCATTACAGGCACAAGAAAACATTACTTA ATTGGTGATAATGACCACTTGCAATCAACAGGGACTGATTATTAGTTAACACTTGTGTTGTTCATTTCTTTTTCTCCTTT TGATTTCATTGATAATTCTTGGAGTGGGTATTCATATTCTTTATGTTCTAGAGAGATGCAAAGACTTGCAGTAGATGATG TATCTTAACTTTCCTTTTTGTATAGTGACTAGATATATGTGAAATTAGATACAAACATTAATTTTTGTTAAGTTGTACAA GTTAAATCAATAAAATATTATTTTTCTTGCTGCAGTTTTTTCCATCAATTATTACATATTAGGTAAGTCTATAAGTATAA TTTATATAAGTTAATAAGCATAAGAGTTGAATGGATATACAATGATAGTATAAAAGAGCTTTACACACACAACCAATCAC GGTACTCAACAGCACACAAGGGCTATAAATGCCTCACACCCAAAGGTAAAAGTATTCTCTCAAAGGATGTTTGTTATCTT CAAATAAATGCATTTCCCCTACACTGCTCCATTTCTTAGTCATTCTTCATCATCTCTCAGGCCTTG
CDS sequence (LotjaGi3g1v0341300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTGGGGGAGATGCAGAGAAGGGAAAAAGAATCGCCATAATTGGTGTATCAACCTTGTTATTGGTTGCTATGGTTGT GGCTGTCACAGTTAGCGTGAACAAGAGTGAAGCAAACAATGATATAGAAGACAACATGAAGAACCATGTTGCTACCACGG TAAAAGCAGTCCAAACCCTTTGCCATCCCACTGATTACAAGGAAGAATGTGAGGAAACCTTGATAGCAGAGGCTGGAAAC ACCACTGACCCAAAAGAACTTGTAAAAATTGCCTTCAACATTACAATCAAGAAAATTGGTGACAAACTCAAGGAAACTGA GTTGTTGCATGAGGTTGAGAAGGATCCAAGAGCCAAGATGGCACTAGACACATGCAAACAACTTATGGATCTTTCAATTG GGGAGTTAACAAGGTCAGTTGATGGAATAGACGAGTTTCATCTCAACAATTTGGACAAAATTCTCATGAATGTAAAGGTT TGGCTTAGTGGTGCTGTCACATACCAAGATACATGCTTGGATGGGTTTGAGAACACCACTAGCGAAGTTGGGATGAAGAT GAAGGAGCTATTAACAACAAGCATGCATATGAGTAGTAATGCCTTGGCTATTGTCTCGGAACTTGCTGACACCATATCAG ATTGGAATGTCACAAAGTTAACCGGGCGACGCCTCCTCCTTCAGGATTCTAGGACTCCCTCATGGGTTGATCTTGGTCAT CGTAGACTCATTGATTCCAAGAAAAATACTTTCAAACACAAGCCTAATGTGACTGTAGCCATAGATGGCAGTGGAGATTT CAAGAGCATCAATGAGGCATTGAAGAAGGTTCCTGAGCATAACAAAAATCCATTTGTGATTTACATCAAGGAGGGAATTT ACCAAGAGTATGTTGAAGTTACCAAGCATATGACCCATGTTGTGTTTTTGGGTGATGGTGGAAAAATTACACGAATCACT GGAAACAAAAACTTCATTGATGGGATTAACACCTACAGAACTTCAACCGTTGCTATACAAGGAGATCATTTTGCTGCCAT CAATATGGGTTTTGAAAACTCTGCTGGCCCCCAAAAGCATCAAGCAGTGGCATTAAGAGTTCAAGCTGACAAGACCATCT TCTTCAATTGCTCAATGGATGGGTACCAAGATACACTTTATGCCCACACCATGCGTCAATTCTATCGGGATTGCACCATT TCGGGTACCATCGACTTTGTCTTTGGTAATGCGCTAGCCGTTTTTCAGAATTGTACTTTCGTGGTCCGAAAGCCATTGGA AAACCAACAATGCATTGTAACTGCACAAGGCAGGAAAGAAAGGCAACAACCATCAGGAATAGTCATTCAAGGGGGTTCCA TTGTGTCTGACCCTGAGTTCTACCCTGTGAGATTTGACAATAAGGCTTACCTAGCTCGTCCATGGAAGAATTACTCTAGA ACTATCATCATGGACAGCTATATTGATGATTTGATTCATCCTGATGGCTATCTACCATGGCAAGGATTAGAAGGTCCATC CGGCATGGACACTTGCTTCTATTCTGAGTACCACAATGTAGGTCCGGGTTCAGATAAATCAAAGCGTGTAGATTGGGCTG GAATTTGGAATCTCAATTCAAAAGCTGCACATTTGTTCTCCCCATCCAAATTTTTCCATGGAGATGACTGGATTGAGGCT ACCGGGATCCCTTACTTCCCTGAGATTCCCAAGCATTACAGGCACAAGAAAACATTACTTAATTGGTGA
Protein sequence (LotjaGi3g1v0341300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFGGDAEKGKRIAIIGVSTLLLVAMVVAVTVSVNKSEANNDIEDNMKNHVATTVKAVQTLCHPTDYKEECEETLIAEAGN TTDPKELVKIAFNITIKKIGDKLKETELLHEVEKDPRAKMALDTCKQLMDLSIGELTRSVDGIDEFHLNNLDKILMNVKV WLSGAVTYQDTCLDGFENTTSEVGMKMKELLTTSMHMSSNALAIVSELADTISDWNVTKLTGRRLLLQDSRTPSWVDLGH RRLIDSKKNTFKHKPNVTVAIDGSGDFKSINEALKKVPEHNKNPFVIYIKEGIYQEYVEVTKHMTHVVFLGDGGKITRIT GNKNFIDGINTYRTSTVAIQGDHFAAINMGFENSAGPQKHQAVALRVQADKTIFFNCSMDGYQDTLYAHTMRQFYRDCTI SGTIDFVFGNALAVFQNCTFVVRKPLENQQCIVTAQGRKERQQPSGIVIQGGSIVSDPEFYPVRFDNKAYLARPWKNYSR TIIMDSYIDDLIHPDGYLPWQGLEGPSGMDTCFYSEYHNVGPGSDKSKRVDWAGIWNLNSKAAHLFSPSKFFHGDDWIEA TGIPYFPEIPKHYRHKKTLLNW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 38 | 38 | - | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 2 | 574 | 573 | 0.0 | – | |
| PANTHER | 2 | 574 | 573 | 0.0 | – | |
| Phobius | 12 | 33 | 22 | - | – | |
| TMHMM | 12 | 34 | 23 | - | – | |
| Phobius | 34 | 582 | 549 | - | – | |
| TIGRFAM | 40 | 208 | 169 | 9.0E-26 | ||
| Gene3D | 51 | 210 | 160 | 7.2E-19 | ||
| SMART | 52 | 204 | 153 | 1.8E-36 | ||
| SUPERFAMILY | 56 | 208 | 153 | 4.19E-31 | ||
| Pfam | 56 | 204 | 149 | 2.9E-26 | ||
| CDD | 59 | 209 | 151 | 9.65704E-42 | – | |
| SUPERFAMILY | 254 | 566 | 313 | 2.11E-101 | ||
| Gene3D | 254 | 570 | 317 | 4.3E-117 | ||
| Pfam | 256 | 555 | 300 | 3.5E-129 | ||
| ProSitePatterns | 281 | 300 | 20 | - | ||
| ProSitePatterns | 400 | 409 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Enzyme inhibitor activity | Binds to and stops, prevents or reduces the activity of an enzyme. | ||
| Molecular function | Pectinesterase activity | Catalysis of the reaction: pectin + n H2O = n methanol + pectate. | ||
| Biological process | Cell wall modification | The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. |
Expression pattern of LotjaGi3g1v0341300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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