Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0343600 |
| Transcript ID | LotjaGi3g1v0343600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cellulose synthase-like protein; TAIR: AT4G31590.1 Cellulose-synthase-like C5; Swiss-Prot: sp|Q9SB75|CSLC5_ARATH Probable xyloglucan glycosyltransferase 5; TrEMBL-Plants: tr|I1KG54|I1KG54_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0343600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:72023768..72027774) extracted from Lotus japonicus Gifu genome v1.2.
TCTTCTAATTTGGAGTCGGTCAGGCTAGCAATGTGTCGCGAATCCGATAGAAGGAGGAGGAGGACTTTTACCAACAGAAA TTTGAACGTTTAGTTATTGGGAGATGAAAGTTAAACTCGTAAATATGTACCATATTCCCTACCAATTGTCCCAACTCCCA AGTTGGCTCAAAAAAACCCCCACACTCACATCTCCTCTACTCAAATATAGAAAAGCTAGACAAAGAGAAGAACCCCACAC TCTGATACACTTGTTCTCCTCCCTCTCTCTCTCTCTACCTTTATGCCTAGCTTTGCTACATTCAGAGCAAAAATGGCTTG TACTACTTCTCACACTATTCCAAACTGTTAGATCCGACAAAACAAAGCTTGTATGTTTTTGTCAATCTTTCCTTCTTGCT CTCTCAAACTTGGAACCCCAAAAATGATGTTTTTTTTTTCCAACTTCCTCAGTAATGGCCATGGCTTCAGCTAACTAACA CTTGTTCTTGTCATTGTCTCTGTAAACTAACCTCTTGCTATTTCTACCACACCAGTGTCAATGGCTCCAAGTTTTGATTT CTCAAGGTGGTGGTCCAAGGACAGTTCAAGAAAAGGAAACCCAGTTGTGGTAACCATGGAGAATCCCAACTACTCAGTGG TGGAAATAGATGGTCCAGACTCTGCATTTCAGCCAGTTGAAAAGGGAAGAGGTAGAAATGCCAAGCAATTCACATGGGTT TTGCTTCTGAAAGCGCATAGAGCTGTCGGTTGTGTTGCTTGGCTTGGAAACTCTCTGTACTCATTGCTTGGCACTGTTAA GAAGAGGTTGATTCTAGGCCATGGAGTTTCTGCAGAGAGTGATAAATCCGGAAAGACAAGGTTTCTGCTTGGAGTGATTG TTACATTCTTGGTCATGGCTTTGGCATTTCTGACATTTGAACTTGTTGCTCACTTCAATGGCTGGCACTACTTTCAACAA CACAACAGTTTGCACATTCCACAAACTTTGGAGATCAAAGGGTGGTTCCACACGGTTTATGTTGGGTGGTTGGAGTTCAG GGCAGATTATATTGCACCCATAATTCAATCTCTCTCAGCTTTCTGCATAATTCTTTTCTTAATTCAGTCAGTGGATCGAA TGATTCTGTCTCTTGGTTGCTTCTGGATCAAATACAAGAAGATTAAGCCCTTGATTGGTGAGGATTTGGAAGGGTCTAAG GATGGATACCCTATGGTGCTTGTTCAAATTCCTATGTGTAATGAGAAAGAGGTGACTGTCTTGTCTTATTCCTGTGTTCT TATTACTTTACTTTTTTGATGTAAAAAATTTGTCGGTGCTCTTAATTCACTACAATTCAATTATTAAATAGTTCCTTTGA ACATATCATGATGATAATTAGCCACTTCCCTCTTGGTTTCATCACAAAAGATCCTATGTTGAATTATTATGTCCTAATTT CATTACCTGTGTCAAAGAAAGTGAAGTAACTGGAGGTAGTAGTTGATTACATGATGCCATAGGGATTTACAACATTTACT CTTTCCCGTTTATGATCATGAATACTTTGGCATTAACTGCAGGTATATGAACAATCTATTTCTGCAGTCTGCCAACTTGA TTGGCCAAAAGATCGTTTGCTTATTCAAGTTTTGGATGACTCTGATGATGAAGGCATACAATGGTTAATCAAGGGAGAGG TCTCAAAGTGGAGTCAGAGAGGTTCCAATATCATCTACCGTCATAGGCTGTTAAGAACTGGTTACAAAGCAGGAAATCTC AAGTCTGCAATGAGCTGCGATTACGTGAAGGATTACGAGTTTGTTGCGATTTTCGATGCTGATTTCCAACCGAATCCAGA TTTCCTCAAGCAAACGGTCCCACATTTTAAGGTGGCTAATTTACATGTTTCTTCCTTGTTATTTCATAATCTCGTTTCGC ATTCTCATTCTTAAGTTTGTTTTGCAGGGCGATCCTGAGCTGGCGTTGGTTCAGGCTAGGTGGGCTTTTGTAAACAAGGA GGAGAACTTGCTAACACGTCTCCAGAATATTAATTTGTGCTTCCACTTTGAGGTTGAGCAGCAGGTTAATGGGGTTTTCC TGAACTTCTTTGGTTTTAATGGAACTGCTGGTGTTTGGAGAATAAAAGCACTGGAAGAATCTGGTGGATGGCTTGAAAGA ACTACAGTAGAAGACATGGATATAGCAGTCCGGGCCCATCTCAATGGTTGGAAATTTATCTATCTCAACGATGTAAAGGT AACCCCTTTTTTTATATATCGCAGTCCAAGCTTATCTTAGAGTATCTACAGCCTACAATGGCAGTTCTAGTATGCATTAA TTTTGAAGATTAGGATGAACTTGATTTGGGTGAAGTAATTATCTGCAGACTTCAGTTATTAAGAGACACTTTTCACTAAA TTTTTGGGTTGAAGTAATTATCTGCAGACTTCAGTTATTGAGAGACATTTTTCACTAATTTTTTGGGTTGATGTACTAGT GACATTTTTCACTATGTTAAATATAAGTGGCAATTAGGTTGATGTACTAGTGACACTTCTTTCAGGTGCTTTGTGAGCTT CCTGAATCATATGAAGCTTATAGGAAACAACAACATCGATGGCATTCTGGTCCTATGCAACTCTTTCGTTTGTGCCTTCC AGCCATCTTAACTTCTAAGGTTAAGTATTTTCCTTTATCAAGTGTTGCACTATTTTGGAGGAAAACACAATCTAAACATG TTGTGGTGCCATGATGTTGCAGATTGGATTCTGGAAGAAAACAAACCTTATATTTCTATTCTTTCTGCTTAGAAAGCTAA TCCTCCCATTCTATTCTTTCACATTATTCTGCATCATTCTTCCTTTGACGATGTTCGTCCCAGAAGCTGAGCTTCCCATC TGGGTTATTTGTTACATTCCTGTATTCATGTCATTCTTGAACATTCTTCCTGCCCCAAAATCCTTCCCCTTCATTGTTCC TTACCTCCTGTTTGAGAACACCATGTCGGTAACCAAATTCAATGCCATGGTATCCGGTCTGTTCCAGCTGGGAAGCTCAT ACGAATGGATCGTTACCAAAAAATCCGGTCGCTCGTCAGAGCCTGACCTATTGGCTGCTGAAGAACGCGATTCGAAGGCC ATGAGTCTCCAACTTCACAGAGGAAGTTCTGATAGTGGACTTTCTGAGCTTAACAAAATAAAGGAATGCCAAGTAACTGT TCCTAGACCTACGGCAAAGAAAACGAACAAGATATACAAGAAAGAGCTTGCACTTGCATTCTTACTGCTAACTGCTGCAG TTAGGAGCCTATTATCAGCACAGGGGATGCACTTCTACTACTTGTTATTTCAAGGTGTGTCATTCCTCCTTGTAGGTCTG GATTTAATTGGTGAACAGATGAGCTAGAAGATCAGAAAAGGATGTGTAAAAATAGAAAATTGATTGTTATAAAGTTCAAT AATTGAAGAAGCCAACAAATTTGAATGCTGCAAGATTGTTGGTTTTGGAAGTTACATTCAAGGTTCGTGAATATGGCTCA GGTAAAGTACTGAAAGCTACACTGGGTCAAATCATAAATAAGTTTATTATTCTTGAAGTGTCACTATAGAAATTTTTCTG GTTTCTTGTCCTTTGATTGTTGCAGTACAAATGTTTTTCTTTTCCTTTTCAATTTTCTGTAAGATAACCCCATTCATTTT ATCTCAATATCACACCCTGTTACTCACACCACATATGGTTCATATGTACCTGTTGAATGACATTGATGTATTACTACTTC CAGCAAAAAGCTGTTCACTTCACATGTGAAGAATCTGAAAGGTTGTTGAGCCAAATTTCACATACATGCCACAGTGCTAT TACTCTATGTTCTGGTAAAAACCGTAAAATGCTATCTAAATCTTGTTTATTTTTAAAAAGAAAATAGTGTCGGCAGGAGA AAGTTGCATTGGAAGGTGAGGACATAAAATTGGTTTATTAATGTGGAATTTGGGCCTTGGTTTTGCAAGAGGACGAGTGT CTTATTG
CDS sequence (LotjaGi3g1v0343600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCCAAGTTTTGATTTCTCAAGGTGGTGGTCCAAGGACAGTTCAAGAAAAGGAAACCCAGTTGTGGTAACCATGGA GAATCCCAACTACTCAGTGGTGGAAATAGATGGTCCAGACTCTGCATTTCAGCCAGTTGAAAAGGGAAGAGGTAGAAATG CCAAGCAATTCACATGGGTTTTGCTTCTGAAAGCGCATAGAGCTGTCGGTTGTGTTGCTTGGCTTGGAAACTCTCTGTAC TCATTGCTTGGCACTGTTAAGAAGAGGTTGATTCTAGGCCATGGAGTTTCTGCAGAGAGTGATAAATCCGGAAAGACAAG GTTTCTGCTTGGAGTGATTGTTACATTCTTGGTCATGGCTTTGGCATTTCTGACATTTGAACTTGTTGCTCACTTCAATG GCTGGCACTACTTTCAACAACACAACAGTTTGCACATTCCACAAACTTTGGAGATCAAAGGGTGGTTCCACACGGTTTAT GTTGGGTGGTTGGAGTTCAGGGCAGATTATATTGCACCCATAATTCAATCTCTCTCAGCTTTCTGCATAATTCTTTTCTT AATTCAGTCAGTGGATCGAATGATTCTGTCTCTTGGTTGCTTCTGGATCAAATACAAGAAGATTAAGCCCTTGATTGGTG AGGATTTGGAAGGGTCTAAGGATGGATACCCTATGGTGCTTGTTCAAATTCCTATGTGTAATGAGAAAGAGGTATATGAA CAATCTATTTCTGCAGTCTGCCAACTTGATTGGCCAAAAGATCGTTTGCTTATTCAAGTTTTGGATGACTCTGATGATGA AGGCATACAATGGTTAATCAAGGGAGAGGTCTCAAAGTGGAGTCAGAGAGGTTCCAATATCATCTACCGTCATAGGCTGT TAAGAACTGGTTACAAAGCAGGAAATCTCAAGTCTGCAATGAGCTGCGATTACGTGAAGGATTACGAGTTTGTTGCGATT TTCGATGCTGATTTCCAACCGAATCCAGATTTCCTCAAGCAAACGGTCCCACATTTTAAGGGCGATCCTGAGCTGGCGTT GGTTCAGGCTAGGTGGGCTTTTGTAAACAAGGAGGAGAACTTGCTAACACGTCTCCAGAATATTAATTTGTGCTTCCACT TTGAGGTTGAGCAGCAGGTTAATGGGGTTTTCCTGAACTTCTTTGGTTTTAATGGAACTGCTGGTGTTTGGAGAATAAAA GCACTGGAAGAATCTGGTGGATGGCTTGAAAGAACTACAGTAGAAGACATGGATATAGCAGTCCGGGCCCATCTCAATGG TTGGAAATTTATCTATCTCAACGATGTAAAGGTGCTTTGTGAGCTTCCTGAATCATATGAAGCTTATAGGAAACAACAAC ATCGATGGCATTCTGGTCCTATGCAACTCTTTCGTTTGTGCCTTCCAGCCATCTTAACTTCTAAGATTGGATTCTGGAAG AAAACAAACCTTATATTTCTATTCTTTCTGCTTAGAAAGCTAATCCTCCCATTCTATTCTTTCACATTATTCTGCATCAT TCTTCCTTTGACGATGTTCGTCCCAGAAGCTGAGCTTCCCATCTGGGTTATTTGTTACATTCCTGTATTCATGTCATTCT TGAACATTCTTCCTGCCCCAAAATCCTTCCCCTTCATTGTTCCTTACCTCCTGTTTGAGAACACCATGTCGGTAACCAAA TTCAATGCCATGGTATCCGGTCTGTTCCAGCTGGGAAGCTCATACGAATGGATCGTTACCAAAAAATCCGGTCGCTCGTC AGAGCCTGACCTATTGGCTGCTGAAGAACGCGATTCGAAGGCCATGAGTCTCCAACTTCACAGAGGAAGTTCTGATAGTG GACTTTCTGAGCTTAACAAAATAAAGGAATGCCAAGTAACTGTTCCTAGACCTACGGCAAAGAAAACGAACAAGATATAC AAGAAAGAGCTTGCACTTGCATTCTTACTGCTAACTGCTGCAGTTAGGAGCCTATTATCAGCACAGGGGATGCACTTCTA CTACTTGTTATTTCAAGGTGTGTCATTCCTCCTTGTAGGTCTGGATTTAATTGGTGAACAGATGAGCTAG
Protein sequence (LotjaGi3g1v0343600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPSFDFSRWWSKDSSRKGNPVVVTMENPNYSVVEIDGPDSAFQPVEKGRGRNAKQFTWVLLLKAHRAVGCVAWLGNSLY SLLGTVKKRLILGHGVSAESDKSGKTRFLLGVIVTFLVMALAFLTFELVAHFNGWHYFQQHNSLHIPQTLEIKGWFHTVY VGWLEFRADYIAPIIQSLSAFCIILFLIQSVDRMILSLGCFWIKYKKIKPLIGEDLEGSKDGYPMVLVQIPMCNEKEVYE QSISAVCQLDWPKDRLLIQVLDDSDDEGIQWLIKGEVSKWSQRGSNIIYRHRLLRTGYKAGNLKSAMSCDYVKDYEFVAI FDADFQPNPDFLKQTVPHFKGDPELALVQARWAFVNKEENLLTRLQNINLCFHFEVEQQVNGVFLNFFGFNGTAGVWRIK ALEESGGWLERTTVEDMDIAVRAHLNGWKFIYLNDVKVLCELPESYEAYRKQQHRWHSGPMQLFRLCLPAILTSKIGFWK KTNLIFLFFLLRKLILPFYSFTLFCIILPLTMFVPEAELPIWVICYIPVFMSFLNILPAPKSFPFIVPYLLFENTMSVTK FNAMVSGLFQLGSSYEWIVTKKSGRSSEPDLLAAEERDSKAMSLQLHRGSSDSGLSELNKIKECQVTVPRPTAKKTNKIY KKELALAFLLLTAAVRSLLSAQGMHFYYLLFQGVSFLLVGLDLIGEQMS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 688 | 688 | 0.0 | – | |
| Phobius | 1 | 107 | 107 | - | – | |
| PANTHER | 1 | 688 | 688 | 0.0 | – | |
| TMHMM | 108 | 130 | 23 | - | – | |
| Phobius | 108 | 126 | 19 | - | – | |
| Phobius | 127 | 169 | 43 | - | – | |
| TMHMM | 166 | 188 | 23 | - | – | |
| Phobius | 170 | 188 | 19 | - | – | |
| Phobius | 189 | 483 | 295 | - | – | |
| Gene3D | 216 | 443 | 228 | 4.9E-66 | ||
| SUPERFAMILY | 226 | 527 | 302 | 8.34E-47 | ||
| Pfam | 318 | 513 | 196 | 1.5E-20 | ||
| Phobius | 484 | 513 | 30 | - | – | |
| TMHMM | 488 | 510 | 23 | - | – | |
| Phobius | 514 | 518 | 5 | - | – | |
| Phobius | 519 | 537 | 19 | - | – | |
| TMHMM | 520 | 537 | 18 | - | – | |
| Phobius | 538 | 643 | 106 | - | – | |
| TMHMM | 644 | 666 | 23 | - | – | |
| Phobius | 644 | 659 | 16 | - | – | |
| Phobius | 660 | 664 | 5 | - | – | |
| Phobius | 665 | 684 | 20 | - | – | |
| Phobius | 685 | 689 | 5 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0343600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…