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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0347100 |
| Transcript ID | LotjaGi3g1v0347100.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heat shock 70 kDa protein; TAIR: AT3G12580.1 heat shock protein 70; Swiss-Prot: sp|Q9LHA8|MD37C_ARATH Probable mediator of RNA polymerase II transcription subunit 37c; TrEMBL-Plants: tr|W9QV79|W9QV79_9ROSA Heat shock 70 kDa protein; Found in the gene: LotjaGi3g1v0347100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:72470133..72472251) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTTCCAAGGCAGAAGGAAAAGCTATCGGCATTGACCTCGGCACCACCTACAGCTGCGTCGGCGTATGGCAAAACGA CCGCGTCGAGATCATAGCCAACGACCAAGGCAACAGAACCACCCCTTCCTACGTCGCATTCACCGACACAGAGCGTCTCA TCGGAGACGCAGCCAAGAACCAAGTCGCCATGAACCCGCAGAACACTGTCTTCGACGCCAAACGCCTCATCGGCCGCAGA TTCTCCGACCCATCTGTGCAAAGCGACATGAAACACTGGCCTTTCAAGGTGGTTCCCGGCGCCGGCGAAAAACCCATGAT CGCCGTCAACTACAAAGGCGAACAGAAGCAGTTTTCAGCTGAAGAGATTTCTTCAATGGTGCTGACAAAAATGAGGGAAA TCGCAGAGGCTTTCTTGGGGCAGAGTGTCAAGAACGCGGTGGTTACTGTCCCTGCTTACTTCAATGATTCGCAGAGGCAA GCCACGAAAGACGCCGGCGCCATTGCTGGACTCAACGTGCTGCGGATTATCAATGAGCCAACTGCTGCTGCAATCGCTTA TGGTTTGGACAAGAAGGCTTCGAGCAGCGGCGAGAAGAATGTGCTCATCTTCGACCTCGGTGGTGGCACGTTTGATGTTT CTCTCCTCACCATTGAGGAAGGGATTTTCGAAGTGAAGGCTACTGCAGGGGACACCCATTTGGGAGGTGAAGATTTTGAC AACAGGCTTGTGAGTCACTTCGTTGCAGAGTTCAAGAGGAAGCACAAGAAGGATATCAGTACCAATGCTAGAGCTTTGAG AAGATTGAGGACTGCTTGTGAGAGAGCCAAGAGGACTCTATCTTCGACTACTCAGACAACCATTGAGATTGATTCTCTTT TTGAAGGGATTGATTTCTATTCAACTATTACAAGAGCGAGGTTTGAGGAGTTGAACATGGACTTGTTCAGGAAATGCATG GAGCCTGTTGAGAAATGTTTGAGAGACTCCAAGATTGATAAGAGCAATGTTCATGATGTGGTTCTTGTTGGTGGATCAAC TAGGATTCCAAAAGTGCAGCAATTGCTTCAGGATTTCTTCAATGGGAAAGAGCTTTGCAAGAGTATCAACCCTGATGAGG CTGTTGCATATGGAGCTGCAGTGCAAGCTGCTATTCTGACAGGTGAAGGGAATCAGAAAGTTCAGGACTTGCTTCTTCTT GATGTTACCCCTCTCAGCCTTGGAATTGAAACTGCTGGTGGTGTGATGACAGTGCTGATTCCAAGAAACACAACAATACC CACCAAGAAAGAACAGATTTTTTCTACTTACTCAGATAATCAACCTGGAGTTTTGATTCAGGTGTATGAAGGTGAGAGAG CAAGAACCAAAGACAACAACCTTTTAGGGAAATTTGAGCTTGCTGGCATCCCTCCAGCGCCAAGAGGAGTTCCTCAAATC AATGTCTGCTTCGACATTGATGCGAACGGTATTCTGAATGTTTCTGCTGAGGATAAGACTGCAGGGGTGAAGAACAAGAT CACCATCACCAATGACAAGGGGAGGCTGAGCAAGGAGGAGATTGAGAGGATGGTGCAGGAAGCAGAGAGGTACAAGGCAG AGGATGAGGAGGTGAAGAAGAAGGTTGATGCCAAGAACGCTTTGGAAAACTATGCTTATAACATGAGGAATACAGTGAAA GATGAGAAATTTGCAGGGAAATTGGATGCTGGAGATAAGCAGAAGATTGAGAAGGCTGTTGATGAGGCAATTGAGTGGCT TGACAGGAATCAGCTGGCAGAAGTGGAGGAATTTGAGGACAAATTGAAAGAGTTGGAGGGATTGTGCAACCCAATTATTG CCAAGATGTATCAAGGTGCTGGTGGAGATGTGCCTATGGGTGGTGCAGGTGACATTCCTAATGGTGGCTATGGAAAATCG TCTACTGGTGGCACTGGTGCTGGGCCTAAGATTGAAGAAGTTGACTAAAATGGGAATCGTCAGTATTTTGTCCTCTAAAC ATGTTCTTGTTTATGTTTTTTTTTTTTTTTTTGATAAGCATGTTCTTGTTTATGTAATGCCTTCTACAGTTTTCTTTTAC TTGAGTGGTTTTGGCAGGTCAATTAGTAATGTTTTCTAG
CDS sequence (LotjaGi3g1v0347100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCCAAGGCAGAAGGAAAAGCTATCGGCATTGACCTCGGCACCACCTACAGCTGCGTCGGCGTATGGCAAAACGA CCGCGTCGAGATCATAGCCAACGACCAAGGCAACAGAACCACCCCTTCCTACGTCGCATTCACCGACACAGAGCGTCTCA TCGGAGACGCAGCCAAGAACCAAGTCGCCATGAACCCGCAGAACACTGTCTTCGACGCCAAACGCCTCATCGGCCGCAGA TTCTCCGACCCATCTGTGCAAAGCGACATGAAACACTGGCCTTTCAAGGTGGTTCCCGGCGCCGGCGAAAAACCCATGAT CGCCGTCAACTACAAAGGCGAACAGAAGCAGTTTTCAGCTGAAGAGATTTCTTCAATGGTGCTGACAAAAATGAGGGAAA TCGCAGAGGCTTTCTTGGGGCAGAGTGTCAAGAACGCGGTGGTTACTGTCCCTGCTTACTTCAATGATTCGCAGAGGCAA GCCACGAAAGACGCCGGCGCCATTGCTGGACTCAACGTGCTGCGGATTATCAATGAGCCAACTGCTGCTGCAATCGCTTA TGGTTTGGACAAGAAGGCTTCGAGCAGCGGCGAGAAGAATGTGCTCATCTTCGACCTCGGTGGTGGCACGTTTGATGTTT CTCTCCTCACCATTGAGGAAGGGATTTTCGAAGTGAAGGCTACTGCAGGGGACACCCATTTGGGAGGTGAAGATTTTGAC AACAGGCTTGTGAGTCACTTCGTTGCAGAGTTCAAGAGGAAGCACAAGAAGGATATCAGTACCAATGCTAGAGCTTTGAG AAGATTGAGGACTGCTTGTGAGAGAGCCAAGAGGACTCTATCTTCGACTACTCAGACAACCATTGAGATTGATTCTCTTT TTGAAGGGATTGATTTCTATTCAACTATTACAAGAGCGAGGTTTGAGGAGTTGAACATGGACTTGTTCAGGAAATGCATG GAGCCTGTTGAGAAATGTTTGAGAGACTCCAAGATTGATAAGAGCAATGTTCATGATGTGGTTCTTGTTGGTGGATCAAC TAGGATTCCAAAAGTGCAGCAATTGCTTCAGGATTTCTTCAATGGGAAAGAGCTTTGCAAGAGTATCAACCCTGATGAGG CTGTTGCATATGGAGCTGCAGTGCAAGCTGCTATTCTGACAGGTGAAGGGAATCAGAAAGTTCAGGACTTGCTTCTTCTT GATGTTACCCCTCTCAGCCTTGGAATTGAAACTGCTGGTGGTGTGATGACAGTGCTGATTCCAAGAAACACAACAATACC CACCAAGAAAGAACAGATTTTTTCTACTTACTCAGATAATCAACCTGGAGTTTTGATTCAGGTGTATGAAGGTGAGAGAG CAAGAACCAAAGACAACAACCTTTTAGGGAAATTTGAGCTTGCTGGCATCCCTCCAGCGCCAAGAGGAGTTCCTCAAATC AATGTCTGCTTCGACATTGATGCGAACGGTATTCTGAATGTTTCTGCTGAGGATAAGACTGCAGGGGTGAAGAACAAGAT CACCATCACCAATGACAAGGGGAGGCTGAGCAAGGAGGAGATTGAGAGGATGGTGCAGGAAGCAGAGAGGTACAAGGCAG AGGATGAGGAGGTGAAGAAGAAGGTTGATGCCAAGAACGCTTTGGAAAACTATGCTTATAACATGAGGAATACAGTGAAA GATGAGAAATTTGCAGGGAAATTGGATGCTGGAGATAAGCAGAAGATTGAGAAGGCTGTTGATGAGGCAATTGAGTGGCT TGACAGGAATCAGCTGGCAGAAGTGGAGGAATTTGAGGACAAATTGAAAGAGTTGGAGGGATTGTGCAACCCAATTATTG CCAAGATGTATCAAGGTGCTGGTGGAGATGTGCCTATGGGTGGTGCAGTTTTCTTTTACTTGAGTGGTTTTGGCAGGTCA ATTAGTAATGTTTTCTAG
Protein sequence (LotjaGi3g1v0347100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASKAEGKAIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRR FSDPSVQSDMKHWPFKVVPGAGEKPMIAVNYKGEQKQFSAEEISSMVLTKMREIAEAFLGQSVKNAVVTVPAYFNDSQRQ ATKDAGAIAGLNVLRIINEPTAAAIAYGLDKKASSSGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFD NRLVSHFVAEFKRKHKKDISTNARALRRLRTACERAKRTLSSTTQTTIEIDSLFEGIDFYSTITRARFEELNMDLFRKCM EPVEKCLRDSKIDKSNVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILTGEGNQKVQDLLLL DVTPLSLGIETAGGVMTVLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELAGIPPAPRGVPQI NVCFDIDANGILNVSAEDKTAGVKNKITITNDKGRLSKEEIERMVQEAERYKAEDEEVKKKVDAKNALENYAYNMRNTVK DEKFAGKLDAGDKQKIEKAVDEAIEWLDRNQLAEVEEFEDKLKELEGLCNPIIAKMYQGAGGDVPMGGAVFFYLSGFGRS ISNVF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 626 | 623 | 0.0 | ||
| PANTHER | 4 | 626 | 623 | 0.0 | – | |
| SUPERFAMILY | 8 | 191 | 184 | 3.67E-72 | ||
| PRINTS | 8 | 21 | 14 | 6.7E-88 | – | |
| Pfam | 9 | 618 | 610 | 1.4E-264 | ||
| CDD | 9 | 387 | 379 | 0.0 | – | |
| Gene3D | 10 | 384 | 375 | 1.5E-180 | – | |
| ProSitePatterns | 12 | 19 | 8 | - | ||
| PRINTS | 36 | 48 | 13 | 6.7E-88 | – | |
| PRINTS | 58 | 66 | 9 | 6.7E-88 | – | |
| Gene3D | 71 | 118 | 48 | 1.5E-180 | – | |
| PRINTS | 146 | 166 | 21 | 6.7E-88 | – | |
| Gene3D | 192 | 371 | 180 | 1.5E-180 | – | |
| SUPERFAMILY | 197 | 388 | 192 | 1.11E-69 | ||
| ProSitePatterns | 203 | 216 | 14 | - | ||
| PRINTS | 209 | 219 | 11 | 6.7E-88 | – | |
| Gene3D | 235 | 312 | 78 | 1.5E-180 | – | |
| PRINTS | 337 | 353 | 17 | 6.7E-88 | – | |
| ProSitePatterns | 340 | 354 | 15 | - | ||
| PRINTS | 369 | 389 | 21 | 6.7E-88 | – | |
| Gene3D | 387 | 515 | 129 | 2.1E-63 | ||
| SUPERFAMILY | 393 | 549 | 157 | 3.66E-64 | ||
| PRINTS | 396 | 415 | 20 | 6.7E-88 | – | |
| PRINTS | 477 | 493 | 17 | 6.7E-88 | – | |
| Gene3D | 516 | 619 | 104 | 2.8E-41 | ||
| Coils | 518 | 541 | 24 | - | – | |
| SUPERFAMILY | 543 | 622 | 80 | 6.28E-32 | ||
| Coils | 588 | 608 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0347100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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