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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0347100 |
| Transcript ID | LotjaGi3g1v0347100.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heat shock 70 kDa protein; TAIR: AT3G12580.1 heat shock protein 70; Swiss-Prot: sp|P09189|HSP7C_PETHY Heat shock cognate 70 kDa protein; TrEMBL-Plants: tr|W9QV79|W9QV79_9ROSA Heat shock 70 kDa protein; Found in the gene: LotjaGi3g1v0347100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:72470284..72472260) extracted from Lotus japonicus Gifu genome v1.2.
CATCCATCCATGGCTTCCAAGGCAGAAGGAAAAGCTATCGGCATTGACCTCGGCACCACCTACAGCTGCGTCGGCGTATG GCAAAACGACCGCGTCGAGATCATAGCCAACGACCAAGGCAACAGAACCACCCCTTCCTACGTCGCATTCACCGACACAG AGCGTCTCATCGGAGACGCAGCCAAGAACCAAGTCGCCATGAACCCGCAGAACACTGTCTTCGACGCCAAACGCCTCATC GGCCGCAGATTCTCCGACCCATCTGTGCAAAGCGACATGAAACACTGGCCTTTCAAGGTGGTTCCCGGCGCCGGCGAAAA ACCCATGATCGCCGTCAACTACAAAGGCGAACAGAAGCAGTTTTCAGCTGAAGAGATTTCTTCAATGGTGCTGACAAAAA TGAGGGAAATCGCAGAGGCTTTCTTGGGGCAGAGTGTCAAGAACGCGGTGGTTACTGTCCCTGCTTACTTCAATGATTCG CAGAGGCAAGCCACGAAAGACGCCGGCGCCATTGCTGGACTCAACGTGCTGCGGATTATCAATGAGCCAACTGCTGCTGC AATCGCTTATGGTTTGGACAAGAAGGCTTCGAGCAGCGGCGAGAAGAATGTGCTCATCTTCGACCTCGGTGGTGGCACGT TTGATGTTTCTCTCCTCACCATTGAGGAAGGGATTTTCGAAGTGAAGGCTACTGCAGGGGACACCCATTTGGGAGGTGAA GATTTTGACAACAGGCTTGTGAGTCACTTCGTTGCAGAGTTCAAGAGGAAGCACAAGAAGGATATCAGTACCAATGCTAG AGCTTTGAGAAGATTGAGGACTGCTTGTGAGAGAGCCAAGAGGACTCTATCTTCGACTACTCAGACAACCATTGAGATTG ATTCTCTTTTTGAAGGGATTGATTTCTATTCAACTATTACAAGAGCGAGGTTTGAGGAGTTGAACATGGACTTGTTCAGG AAATGCATGGAGCCTGTTGAGAAATGTTTGAGAGACTCCAAGATTGATAAGAGCAATGTTCATGATGTGGTTCTTGTTGG TGGATCAACTAGGATTCCAAAAGTGCAGCAATTGCTTCAGGATTTCTTCAATGGGAAAGAGCTTTGCAAGAGTATCAACC CTGATGAGGCTGTTGCATATGGAGCTGCAGTGCAAGCTGCTATTCTGACAGGTGAAGGGAATCAGAAAGTTCAGGACTTG CTTCTTCTTGATGTTACCCCTCTCAGCCTTGGAATTGAAACTGCTGGTGGTGTGATGACAGTGCTGATTCCAAGAAACAC AACAATACCCACCAAGAAAGAACAGATTTTTTCTACTTACTCAGATAATCAACCTGGAGTTTTGATTCAGGTGTATGAAG GTGAGAGAGCAAGAACCAAAGACAACAACCTTTTAGGGAAATTTGAGCTTGCTGGCATCCCTCCAGCGCCAAGAGGAGTT CCTCAAATCAATGTCTGCTTCGACATTGATGCGAACGGTATTCTGAATGTTTCTGCTGAGGATAAGACTGCAGGGGTGAA GAACAAGATCACCATCACCAATGACAAGGGGAGGCTGAGCAAGGAGGAGATTGAGAGGATGGTGCAGGAAGCAGAGAGGT ACAAGGCAGAGGATGAGGAGGTGAAGAAGAAGGTTGATGCCAAGAACGCTTTGGAAAACTATGCTTATAACATGAGGAAT ACAGTGAAAGATGAGAAATTTGCAGGGAAATTGGATGCTGGAGATAAGCAGAAGATTGAGAAGGCTGTTGATGAGGCAAT TGAGTGGCTTGACAGGAATCAGCTGGCAGAAGTGGAGGAATTTGAGGACAAATTGAAAGAGTTGGAGGGATTGTGCAACC CAATTATTGCCAAGATGTATCAAGGTGCTGGTGGAGATGTGCCTATGGGTGGTGCAGGTGACATTCCTAATGGTGGCTAT GGAAAATCGTCTACTGGTGGCACTGGTGCTGGGCCTAAGATTGAAGAAGTTGACTAA
CDS sequence (LotjaGi3g1v0347100.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCCAAGGCAGAAGGAAAAGCTATCGGCATTGACCTCGGCACCACCTACAGCTGCGTCGGCGTATGGCAAAACGA CCGCGTCGAGATCATAGCCAACGACCAAGGCAACAGAACCACCCCTTCCTACGTCGCATTCACCGACACAGAGCGTCTCA TCGGAGACGCAGCCAAGAACCAAGTCGCCATGAACCCGCAGAACACTGTCTTCGACGCCAAACGCCTCATCGGCCGCAGA TTCTCCGACCCATCTGTGCAAAGCGACATGAAACACTGGCCTTTCAAGGTGGTTCCCGGCGCCGGCGAAAAACCCATGAT CGCCGTCAACTACAAAGGCGAACAGAAGCAGTTTTCAGCTGAAGAGATTTCTTCAATGGTGCTGACAAAAATGAGGGAAA TCGCAGAGGCTTTCTTGGGGCAGAGTGTCAAGAACGCGGTGGTTACTGTCCCTGCTTACTTCAATGATTCGCAGAGGCAA GCCACGAAAGACGCCGGCGCCATTGCTGGACTCAACGTGCTGCGGATTATCAATGAGCCAACTGCTGCTGCAATCGCTTA TGGTTTGGACAAGAAGGCTTCGAGCAGCGGCGAGAAGAATGTGCTCATCTTCGACCTCGGTGGTGGCACGTTTGATGTTT CTCTCCTCACCATTGAGGAAGGGATTTTCGAAGTGAAGGCTACTGCAGGGGACACCCATTTGGGAGGTGAAGATTTTGAC AACAGGCTTGTGAGTCACTTCGTTGCAGAGTTCAAGAGGAAGCACAAGAAGGATATCAGTACCAATGCTAGAGCTTTGAG AAGATTGAGGACTGCTTGGATTGATTTCTATTCAACTATTACAAGAGCGAGGTTTGAGGAGTTGAACATGGACTTGTTCA GGAAATGCATGGAGCCTGTTGAGAAATGTTTGAGAGACTCCAAGATTGATAAGAGCAATGTTCATGATGTGGTTCTTGTT GGTGGATCAACTAGGATTCCAAAAGTGCAGCAATTGCTTCAGGATTTCTTCAATGGGAAAGAGCTTTGCAAGAGTATCAA CCCTGATGAGGCTGTTGCATATGGAGCTGCAGTGCAAGCTGCTATTCTGACAGGTGAAGGGAATCAGAAAGTTCAGGACT TGCTTCTTCTTGATGTTACCCCTCTCAGCCTTGGAATTGAAACTGCTGGTGGTGTGATGACAGTGCTGATTCCAAGAAAC ACAACAATACCCACCAAGAAAGAACAGATTTTTTCTACTTACTCAGATAATCAACCTGGAGTTTTGATTCAGGTGTATGA AGGTGAGAGAGCAAGAACCAAAGACAACAACCTTTTAGGGAAATTTGAGCTTGCTGGCATCCCTCCAGCGCCAAGAGGAG TTCCTCAAATCAATGTCTGCTTCGACATTGATGCGAACGGTATTCTGAATGTTTCTGCTGAGGATAAGACTGCAGGGGTG AAGAACAAGATCACCATCACCAATGACAAGGGGAGGCTGAGCAAGGAGGAGATTGAGAGGATGGTGCAGGAAGCAGAGAG GTACAAGGCAGAGGATGAGGAGGTGAAGAAGAAGGTTGATGCCAAGAACGCTTTGGAAAACTATGCTTATAACATGAGGA ATACAGTGAAAGATGAGAAATTTGCAGGGAAATTGGATGCTGGAGATAAGCAGAAGATTGAGAAGGCTGTTGATGAGGCA ATTGAGTGGCTTGACAGGAATCAGCTGGCAGAAGTGGAGGAATTTGAGGACAAATTGAAAGAGTTGGAGGGATTGTGCAA CCCAATTATTGCCAAGATGTATCAAGGTGCTGGTGGAGATGTGCCTATGGGTGGTGCAGGTGACATTCCTAATGGTGGCT ATGGAAAATCGTCTACTGGTGGCACTGGTGCTGGGCCTAAGATTGAAGAAGTTGACTAA
Protein sequence (LotjaGi3g1v0347100.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASKAEGKAIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRR FSDPSVQSDMKHWPFKVVPGAGEKPMIAVNYKGEQKQFSAEEISSMVLTKMREIAEAFLGQSVKNAVVTVPAYFNDSQRQ ATKDAGAIAGLNVLRIINEPTAAAIAYGLDKKASSSGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFD NRLVSHFVAEFKRKHKKDISTNARALRRLRTAWIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSNVHDVVLV GGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILTGEGNQKVQDLLLLDVTPLSLGIETAGGVMTVLIPRN TTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELAGIPPAPRGVPQINVCFDIDANGILNVSAEDKTAGV KNKITITNDKGRLSKEEIERMVQEAERYKAEDEEVKKKVDAKNALENYAYNMRNTVKDEKFAGKLDAGDKQKIEKAVDEA IEWLDRNQLAEVEEFEDKLKELEGLCNPIIAKMYQGAGGDVPMGGAGDIPNGGYGKSSTGGTGAGPKIEEVD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 272 | 269 | 0.0 | ||
| PANTHER | 4 | 272 | 269 | 0.0 | – | |
| SUPERFAMILY | 8 | 191 | 184 | 4.4E-72 | ||
| PRINTS | 8 | 21 | 14 | 1.4E-81 | – | |
| CDD | 9 | 364 | 356 | 0.0 | – | |
| Pfam | 9 | 272 | 264 | 7.0E-132 | ||
| ProSitePatterns | 12 | 19 | 8 | - | ||
| PRINTS | 36 | 48 | 13 | 1.4E-81 | – | |
| PRINTS | 58 | 66 | 9 | 1.4E-81 | – | |
| Gene3D | 71 | 122 | 52 | 1.2E-31 | – | |
| PRINTS | 146 | 166 | 21 | 1.4E-81 | – | |
| SUPERFAMILY | 197 | 365 | 169 | 5.06E-57 | ||
| Gene3D | 201 | 271 | 71 | 2.3E-23 | – | |
| ProSitePatterns | 203 | 216 | 14 | - | ||
| PANTHER | 274 | 604 | 331 | 0.0 | ||
| Gene3D | 274 | 289 | 16 | 7.1E-37 | – | |
| PANTHER | 274 | 604 | 331 | 0.0 | – | |
| Pfam | 275 | 595 | 321 | 4.8E-117 | ||
| Gene3D | 290 | 348 | 59 | 7.1E-37 | – | |
| PRINTS | 314 | 330 | 17 | 1.4E-81 | – | |
| ProSitePatterns | 317 | 331 | 15 | - | ||
| PRINTS | 346 | 366 | 21 | 1.4E-81 | – | |
| Gene3D | 349 | 361 | 13 | 7.1E-37 | – | |
| Gene3D | 364 | 492 | 129 | 2.1E-63 | ||
| SUPERFAMILY | 370 | 526 | 157 | 3.53E-64 | ||
| PRINTS | 373 | 392 | 20 | 1.4E-81 | – | |
| PRINTS | 454 | 470 | 17 | 1.4E-81 | – | |
| Gene3D | 493 | 596 | 104 | 2.7E-41 | ||
| Coils | 495 | 518 | 24 | - | – | |
| SUPERFAMILY | 520 | 599 | 80 | 6.02E-32 | ||
| Coils | 565 | 585 | 21 | - | – | |
| MobiDBLite | 604 | 632 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0347100.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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