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LotjaGi3g1v0350300.3

Overview

Field Value
Gene ID LotjaGi3g1v0350300
Transcript ID LotjaGi3g1v0350300.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Cinnamoyl-CoA reductase; TAIR: AT1G15950.1 cinnamoyl coa reductase 1; Swiss-Prot: sp|Q9S9N9|CCR1_ARATH Cinnamoyl-CoA reductase 1; TrEMBL-Plants: tr|I1KVL4|I1KVL4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0350300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:72890903..72895049) extracted from Lotus japonicus Gifu genome v1.2.

GACACATCATCAGTTTCCGGCGATATCGTGTGTGTCACCGGCGCCGGCGGGTTCATTGCATCATGGCTCGTCAAACTTCT CTTGGAGAGAGGCTACATTGTCAGAGGCACCGTGCGAAACCCAGGCATGTTATATGTTATTGCTATATATACATGGCATG GCATGCAGTGCTTATTACATGACATGTGTTTTTTCTTGCATGTTAAATTTGATTTATGTAAGGTTGTTTAGCTGAAATTT ATGTTATTAATTTCAGATGATCCTAAGAATGGACACTTGAAAGAGTTGGAAGGAGCCAAGGAGAGGCTAACTCTGCATAA GGCTGATCTCTTTGATCTTGATTCTCTGAAAGCAGTCTTTCATGGTTGCGATGGTGTCTTCCACACCGCCTCCCCGGTCA CTGATAACCCCGTGAGTTCTCTTTCTTTTCCCTTCAATGTTTTTTTTTTTTGAACTTTTTCCCTTCAATGTTAAAGGATT TATTATTGGGTGTTTGAAAAATTCTATTGCCTCTCCTTGTTTCTTTAGATAATTTTTTTTTTTGAAAAATAAAGGATTGT ATATTATTATCCACAAAAAACCTCTAAGGACAAACCCTTAAGGAGCAAGGAAAACCAAAAAAAAAAAAAATGAGGCATCC CGTCGAACACACAAAAAAAACCCCAAATCGCCGCAAAACCCCCATCCAGGGCAAAAGCAAGGGCACCCTAAGACTACCCA ACCACACCCGAGAGAAACAAACAAAAATCAAGTTTTGAAATGTTCCTCATAAATCTTCTCCAACACTTGAATAGCTTCAA AATCGCTTTCCTCAAATTCTAACCCCAAAACTTTTCCAACTAGCCACGTGTTGGAAAAGATAATTAGTACTAGTAAAATT ATTCAAGTAAATATAATATAAAATTATATTTCAACATATGCGTTAGGAAATTCTAGTTTGTCTCACGTGTTAAAATATTA TTGGACTACATAAAACTATGATTATAGTGATTTTACTTTATATTTACTTGGAGTAAATTATATAAATTTTTTAATTGGGA ACTATATTTTCTAGAAACAAATTTCAATGTTCTCACACATTGCCCATATGATCAGGGTCGGCCCTGGGCCTGTGCAGGCA GACCCACAACCCAGTGCCTCCAAAAAGAAGGGGTCCAAAATAAAATTCCCATTAAACTTTTTCAAAAAAAAATTTAACAG TTGTATTCAAGATCAGTTCTGTACTTCTGAATTTAAGAGCTTAATTAGCATTGGAATATGGAAGGTTTCATTGGGTTTTT CTATCTAATTCACTAGATAAGTGGATATTAATTAGTGAACTAATCAACTTTAAAACGGCCCAGGGCCTCAAAAATGTCGG GACCGGCCTGCATATGATACGAGCAGATCTTGGGGTAGACAAGAAGCCAAGATGTCAGTGTTCATTGTTATAGACAATGA ATAAAAACATGACACCACGTTAAAATAAAAATTATAAAGTCATAATTTTAAAGTTAAAAAATGCCACGTTCTTCTCTCTT CTTTCTTTCACGCGCCATTTTCCCCTCCTCTGTAATTTTAATACTAGTAGCAGGAGCGCACGTATTAATTATGCACCACC ACCATTTCCACACAAGCAAAATAAACAGAGGCAAATCCATACACAGGGCCAATAATAACACACTACATTAAAATAAAAAT TGTCCCAATGATGTGTTATAGGACGCTAGGTTTGTGACTACAGTGAATTTAATTAGGAAGATGTGACTAGAGAGAAGTCA CATCAGATCCCTTAACAAGATTATCTCATATGATAACTAATTATATAAAGACCTAAACACTTTTACCCTAAAATTTCAAC AAGTATAATCGATTGTGAAATTTTATTACATCATTTAAAAAATATTTCTTTAATTGTAATTAATTTGATCAAAGACTATT TTGATAATTTGACTAAAAATTAAAAACTATATATTCGAAGATCTAAACATGCATTTAATCAACACGAAATTAATCTACTT TGCAAAAATCTATTAATGTTATCGCCACATTTATTTATGTTGTCTTATGCATACGACACTTTGAGTTTGTGATTTAAAAA AAATACAAACCATACTTTAAATTGTAATATGAAAACAATGCATACCGCATTTTAAATTGTGATATATATATATATATATA TATATATATATATATATTTTGTATTAATTTTCATACAGCGTATGCATTTTTGCTAATGAGTGGCATGAATCCGTACCACA TAAACAACACACTTTTATTTTATTTCCACAAGGGTTAGATTCTTAGAGACAATAGAATGGTTCAACGATACTCTGAGTCT GAGAGACCAATTCCACCAGTTAAAAAACTCTGTTCTCTATGTCATTTTGATTCTATACATAACTGATGACATTGCCAGGA AGAGATGTTGGAACCCGCAGTGAACGGAGCCAGGAATGTAGTCATGGCAGCTGCAGAAACAAAGGTGCAACGAGTTGTAT TCACTTCATCAATTGGGACAGTATACATGGACCCCAATAGGAGCAGAGATGAGGTGGTTGATGAATCATGCTGGAGTGAT CTGGAGTACTGCAAGAATACCAAGGTTCAGTTAAATATTAATATGACTAGTAATCTTTGCATGAAATGTGAATATTAGCA TTAGTAATTAATGGATGGTTAATTAATTTGCAGAATTGGTATTGCTATGGGAAGACAGTGGCAGAGCAAGTAGCATGGGA AGCTGCAAAAGAGAAAGGAGTGGACTTGGTTGTGGTGAACCCTGTTTTGGTTATTGGACCATTACTACAACCTACTATCA ATGCAAGTACAATTCACATTCTCAAGTACCTTACTGGCTCTGCTAAAACTTATGTGAATGCAACTCAGGCTTATGTGGAT GTTAAGGATGCGGCATTAGCCCATGTTCTTGTTTATGAGACTCCTTCTGCATCTGGTAGATACATTTGTGCTGAAAGTTC TCTGCACCGTGGTGAACTTGTTGAGATTCTTGCCAAGTATTTCCCTGAGTACCCAATTCCTACCAAGTAAGTGTTTGTTG TTGTCTCTATAAACTTAAAGCTAAAAATTACAGTGCACAAAAGTAATTTTTATTCGATTTACTATTATCTTACATATTTT TATCACAATAATTTTTTTTCTGTATATCTAAACATGCCCGCTTATGTTAAGAATTTGGATCTTCTCTGGCGGCTTTCTCT ATGTGCAGTTTAACTTGCAAAAGAAAATAAAAATTAAATAATTAGAGTCAAACAATTTGATAACCGGCCAATCTTTGACA TGGATAGCCACATATACAGAGTACAAATATATAAATGTTAAAAACATGGTGGAGATCTAGATGAATACAGAATGATAGGA CTCTTAGTTGGTATACCAACCTTGACTTCTCTACGTGTCCAGTTTCAAACTCTGGAGACTTGGAAAGTCGAGTCAAATTG AATCAAAGCCTCCGAAAAATTCAATGATTTTATAGGCAAAGACGAGTGGAGCTTACAATTTCAAATAGTATTGTCTTTAC CAAACCCCTTGTCTCCTCTCCAACACTCAGGCAACCCTGAGACATGCTTAATTGATCATCTACTAATTTGTCTTTACCAA TTTTAATTACCTAGCTACATCTATTAATTGATACAAGGGCATTCTTAATCATCTACTAATATAGTTTTAAGTGTATGTAG TTGAGTGAAAGTGACCTGTGCTGCTTTAATAAATTTCTTAATTAGCAAAACCTAGTATTTGGAAACCGACAATCCAAGAC CAAAATAAACATTTATTGATGTTTAGAACTAAATTACAATTACGCTTGAAGTGTCACATTGTCTTGTAGATGAGAATTAG AGACACACTCTTTGTTATTGTTTATTTTTTGAAAAATCAACATATTTCTCGAAGAAAGAATTTGGGTTTGGGAATATCTT TCACTCTAGACTTAAACTAAACATGTTATTTCTTTTGTGCAGATGTTCAGATGAAAAGAACCCGAGAGTAAAACCCTACA TATTTTCAAATCAAAAGCTGAAAGACTTGGGATTGGAATTCACCCCAGTGAAGCAGTGTTTGTATGAGACGGTTATGAAT TTACAAGAGAAAGGCCACCTTCCTGTCCTCATAAACCAACAAGAGTTGATCTAAGTTAAAATTATAA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0350300.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTTGGAACCCGCAGTGAACGGAGCCAGGAATGTAGTCATGGCAGCTGCAGAAACAAAGGTGCAACGAGTTGTATTCAC TTCATCAATTGGGACAGTATACATGGACCCCAATAGGAGCAGAGATGAGGTGGTTGATGAATCATGCTGGAGTGATCTGG AGTACTGCAAGAATACCAAGAATTGGTATTGCTATGGGAAGACAGTGGCAGAGCAAGTAGCATGGGAAGCTGCAAAAGAG AAAGGAGTGGACTTGGTTGTGGTGAACCCTGTTTTGGTTATTGGACCATTACTACAACCTACTATCAATGCAAGTACAAT TCACATTCTCAAGTACCTTACTGGCTCTGCTAAAACTTATGTGAATGCAACTCAGGCTTATGTGGATGTTAAGGATGCGG CATTAGCCCATGTTCTTGTTTATGAGACTCCTTCTGCATCTGGTAGATACATTTGTGCTGAAAGTTCTCTGCACCGTGGT GAACTTGTTGAGATTCTTGCCAAGTATTTCCCTGAGTACCCAATTCCTACCAAATGTTCAGATGAAAAGAACCCGAGAGT AAAACCCTACATATTTTCAAATCAAAAGCTGAAAGACTTGGGATTGGAATTCACCCCAGTGAAGCAGTGTTTGTATGAGA CGGTTATGAATTTACAAGAGAAAGGCCACCTTCCTGTCCTCATAAACCAACAAGAGTTGATCTAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0350300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLEPAVNGARNVVMAAAETKVQRVVFTSSIGTVYMDPNRSRDEVVDESCWSDLEYCKNTKNWYCYGKTVAEQVAWEAAKE KGVDLVVVNPVLVIGPLLQPTINASTIHILKYLTGSAKTYVNATQAYVDVKDAALAHVLVYETPSASGRYICAESSLHRG ELVEILAKYFPEYPIPTKCSDEKNPRVKPYIFSNQKLKDLGLEFTPVKQCLYETVMNLQEKGHLPVLINQQELI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.40.50.720
1 234 234 1.1E-93 –
CDD
cd08958
1 202 202 1.27592E-112 –
PANTHER
PTHR10366
1 228 228 1.1E-143 –
PANTHER
PTHR10366:SF650
1 228 228 1.1E-143 –
SUPERFAMILY
SSF51735
2 215 214 6.27E-39
IPR036291
Pfam
PF01370
6 146 141 1.8E-11
IPR001509

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0050662
Molecular function Coenzyme binding Interacting selectively and non-covalently with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0350300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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