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LotjaGi3g1v0351400.1

Overview

Field Value
Gene ID LotjaGi3g1v0351400
Transcript ID LotjaGi3g1v0351400.1
Lotus japonicus genome version Gifu v1.2
Description Defective in cullin neddylation protein; TAIR: AT1G15860.1 defective in cullin neddylation protein (DUF298); Swiss-Prot: sp|Q92564|DCNL4_HUMAN DCN1-like protein 4; TrEMBL-Plants: tr|I3SMJ5|I3SMJ5_LOTJA Defective in cullin neddylation protein; Found in the gene: LotjaGi3g1v0351400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:73029670..73034678) extracted from Lotus japonicus Gifu genome v1.2.

TAAAAACATAAAGTCAAAAGTAGTACGTGAATGAAACTAGATAGCCAAGTTCTGCCATCCACGTCATCATCTTCAACTTC ATTCTCACAACAACAAGAAATCGCATTACCCTCTTCTCTCATTCACACACACACACACACTCTACCCTCCACCACCACCC GTTGAATTTGGCGCCTTCTGCTTCTCAGTTTCCGGCGACGACGACGTTTCCTCGCCGGATTCGAATCGGAATCATCATCA TCCCCTCTGGATTTCTTATTGAAGATGAGACGCTCTGCAGCCAAAAAAACGGGTCAATCCAATTCCACCCCTTCCGTCAA TTCCTCCGCCGCGGATCTCTTCCGCTCCGGTAATATAATCTCTCCATATTCCAATTTCATCATTAATTGATGTTAATTAA GCTTGTTATTTGCTTTGGGTGTTTTTTTTCCTCTTATGGTCACGTTAGTTTTTTTTTTTTTTTGATGATGATGCCTGCAA GCTACTATTGGTCTTGTTTTTAAATTTTTAATGAAAAGATTATATTTTTGAAGAATATTCCTATTTTATTTTGTGGGGTT GGGAAATTGGGTAGCTAGTTAGGTAGGTAGAAGAGGACTAGTGTGATGGGAGAAGAAGCATAGTAAATTAGTAATGCATG CTCAAAGAATTGTGGTCTTGAGAGGATAAAGCATGGTAAATTTAGGTAGCTAAAACTGATTGATGATTCAACTAATCAAG CGCCGAGGAAGGAGGCTCAATGAAACCTCTTTAATTATAAGAATGGGCGTAGCATCGATGCATCAAGAGTTGCATCTACT TCGATTGCTATCTTTTCAGAACATGAAAACTGAAGCCTCTGAACCTGCTTATATTATTTGGAAGTGTATTTGTTGTTTAT GATGACCTGTTTATTTTTTTTTTCTAATCTATAATGGTATCATGTTTGTCTATTGGTCAAAACATAATCAGACTGTTATT TATAAACACTTTCGGAGCGGGTAATTAATTGTTCGATGTTCTAATCTTTTGTGCATAAATTTTCAGCTTCAAGTAAAGCA AGCTCAAAGGAATCGGAAAGAATTGATAGTCTGTTTTATTCATATGCCAATGGATCTTCTAGTTTGATTGAGTAAGTGTG CTTCATTTGAGTAATTCTATCGTAAATAGCATTTTAATTTTCTAAATTCAAATTTCAAAACTAGGACATCAATAGCATTC AATTAATGATTACTTACGGTTGAATATTCGTTAAGATTTTCTATTAGTCTTATCTCATATAGATAGAGTTAAGATTTGTT TCTCTATTTTAGATTAGTATCTATTTAAATAGTGTTGAATATCCGTTAAGATTGATTTGTTACAAGATTAAACCTAAGTA AGCTTTAGCTTGCGGGGAGGGGTGAATATCCGTTATGATTGAGTTTGTTATTAGTCTTATCTTATAATCTGATAAAATAT TTCTTGTGTATATTTCATTTATAGACATAACAAAGAGATAAAAAGAAACTAAATTTATCTCTATTTTTTTAAAATACAGA TAGATTTAGATAGATTTAGTTTCTTTTTATGTCTTTGGTATGTCTATAAATATTGTAGTTTAGAGTCAAGTATTATCAAT GAAATATACACCATAAATATTTTATAAGATTATAAGATAAGACTAATAACAAACTGAATCTTAACGAATATTCAACACTC CCTTCAAGCTAAAGCTTACTTAGATTTAATCTTGTAACAAATCAATCTTAACGGATATTCAACACTTAATGCTGTGAAAT TAACTGTTATAGCCCATTTAATATAGCTAGATGAGTTTCAAAATATCACAAGCTGGTTTTACAGAGTTATATGCATGGAC AAAATGATATCAGGGCTAATTCTGCAGTAGTATAAACATGATAACAAAATAAGATAATGCTTGATATATATACAGTCAGT GGTTAATAAATTCTCATACTATTAGGATTTGGTACAAATAGTATAACCAAGTTAATAGCATATATGACTATCTGTTATGG CTCTACTACCCTTCTGCTTTTCCACCTTCTTCTTCAACATCTCACTCATTCCTCATGGAAAAACTCCTAGCCTGAAGCTA ATTTTTCCCTCACTTCCCACTATTTCAACCCTTTTCTTTCTCCGTGTCCACCACCAGATCTGCCATGATCAAGCAATTGG ATAGGGTTCCACATGTGGTTGAAGTTACAAACAGATACCAATGTTCTTCTCTGCCATGTAAATTTGTTCCTGTCCTTGGC ACTTGGCACTCCCCTAGATGCATTGAAGCCTACCAATAACAGTGGCATAGACTAGCATGCAAAACTAGTGTGGAGGTCAA GAGCTCAGGAGCGGTGTTTCTCTAGCTTCTTCTCCCGTGCTCTGGCATGGCCGCATGGCAGACTCTCCTCTTCCCTGCTC CTTGATCTTCTTTTTCTTTTTTGTCCAGTTAATGCCATGGATGGTGGTTTCTTTAATTGGATAGAGTCCTGGGAAAGTTT AGGAATTATTTTGAAATTTATTCTGCTTTAGAACTCTATAGGTTTTAGTTCAAGGGAATTTTGTGACGATTAATGTGATT TGATTCAATGCAAGTGAAAGTTATTCAGTTGAAATTTGGAATATTTTTAGATAGGTTTATGAATTTTTGGTTACAGATTT TGGTATCCAGGCTTGAAATTTTGTTAGCCAACACATGTCTATGAAATTTGGCAGTTGTCCAATGTTGATCTTGGCTGAGG GAAAGAGTTAGGGTATGTTTAAACCCTGGGTCATTGGCACATTTTTCAAAGCATGGAGATGTGAAGGATGGATTTGTTCC TTCCATAAGAATGTCTGTTTAAGTGCTTGCCTATGAAAAATCACTCTTAGAGCCATGGTGACTATGAAGTAGAGGACAAT GTTATCATGTTATGATAGACTAATAGAGTGATAGGAGTAAAATGTTTTACTTAATTTGACTATAATATTATCAGGTAGCT GCACAAAACACTTCATAAGACATCAATCGTGCATGCAAATAGAAAACAAAGAAACTAAAATATCAGATGAAGAAGAATAG ATGTGTTTTAAGGCCAGAGCTTCTTGGTGTATAAGTGACTTCTTTTTTTTCTTCTCTTGTGCATATTAGGTGAATGTATT TACATTTTGAAAGGAGGTTCATTATTATATTTTTGACTTTTGTTACAGCCCAGAAGGAATTGAAACACTTTGTGCTGATA TGGAGATAGCCCATACTGATGTGAGGATCTTGATGCTTGCATGGTAAGCTGCAGTGCTTTAATTAATTGTCGTTTATTTC CATATTCTTAAATTATCTTAAATTTGTCTTTTTGGATTTGATGAAGACTAAATGTAACAGGAAAATGAAAGCTGAGGAGC AAGGATATTTTACCTTGGTATGTAAATTATCATGTCCATTTGTCATAAACTTTATTCTGCCATTACAAACACATGTATAC ATTCAAAGGCACAAATATAATCAGAAACTGAAGTATCTTTTATGTTTGATAACAATCATGCAATTTTGGCACTGTCTTTC TTTCCCCATCCTTATGCTGAAATTACTTTCATATCCCACAATATTTATAGGATGAGTGGAGGAGAGGCTTAAAAGCACTA AGGGCTGATACAGTTAGTAAATTGAAGAAGGCCCTTCCAGACCTAGAAAAAGAGGTATAATTATCTAAGTGATACTCGTT TTGATTACTCGTGAACATGGAAATTGTTATTTATGCTAGAAATATTTTGAGTTGCTAACTTTTTAATTTGCACATCTAAT GTTGAAGGTCAGGAGGCCATCAAATTTTGCAGATTTCTATTCTTATGCTTTCCAATATTGTCTAACAGGTAAACTTTGAT GTGATTTTTTATAAATTAATTTGAACCTTCAATTTTTACCTTCCTTTGTTCATGCATTATAATTTCATCTATTTTTTTCC AATTTTTTCAGAGGAGAAACAGAAAAGCATTGACACAGAGAGCATTTGTGAATTACTTGCTCTCGTTTTGGGTTCAACAT TTCCAGCCCAAGTCAACTTATTTGTGGAATATTTGAAGGTGAGTAATCGGTATCACATATTGTTTTAATTCTGACTAATG ATTCTTACATGTTTTTATTATTTGATGGTAGGCTCAAGCTGATTACAAGGTCATAAACATGGATCAATGGATGGGATTTT TCCGGTTTTGCAATGAGGTAGCCTCTTTTTCTGGTCCTATGCACTCATCTCTTACGGCACCCTTTGCTTTTCACTGAAGC ACATAAGATGAATACACATTTGTGCTTTCTTTGGATTCATGATTTTGCTATTTAAATTGGAATGACTGGAAAATTCTAAT CTCTTCCCAGATAAGTTTTCCATCACTTAATGACTATGATCCTGATCTTGCCTGGCCCTTGATCTTGGATAATTTCGTTG ATTGGCTGCGAGCAAAGCAAACGTAACTGGTATATTTCAGCCCTGATTCTCTGTAAATCCATGAAATGTAGTTTTCCAAA TTTGCTTTCTGACCTATGCTAATTGGTTTGTTGGCAGAGCACTCCTTTAGTTAGAGGAACTGGCAGACTGCTATATCAGA CAGCTGGGATGCTTAAGGCTTGTTTATTGTACTTAGCATGTTATTGTAATTCTGTTGGCCCAATTTCTTAATGGGCATTC TAAACAAAAATTATTGTTACTTTTTCTTTATATTTTCCATTTCATCCCATAGATGCAGTTAAAGGCTAGATACAAGCCTG TACTATCTTGACAAAAAATTAGCTTGTAATCTTCAATCTTTGGTCATCATCAATGCCGACATCTTCTATCCTATTCATAT CATTCACAGGAGAACTTTTACTGAACTGAGACTGGTCTTATATTGCATCATCATACACATGTTTTTTAAAAGAAAAACTC ATATTGGAGTGTAGGTTTGTTAGAATCCAATTGCAAGGTATGGACTTGAATCCCACATTGAAAGTATAGTTCTCTTAAGG AAAACATGAGTTAGTGATTCAAACGGCAGTAAAACAAAATGTAGGAGAG
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0351400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGACGCTCTGCAGCCAAAAAAACGGGTCAATCCAATTCCACCCCTTCCGTCAATTCCTCCGCCGCGGATCTCTTCCG CTCCGCTTCAAGTAAAGCAAGCTCAAAGGAATCGGAAAGAATTGATAGTCTGTTTTATTCATATGCCAATGGATCTTCTA GTTTGATTGACCCAGAAGGAATTGAAACACTTTGTGCTGATATGGAGATAGCCCATACTGATGTGAGGATCTTGATGCTT GCATGGAAAATGAAAGCTGAGGAGCAAGGATATTTTACCTTGGATGAGTGGAGGAGAGGCTTAAAAGCACTAAGGGCTGA TACAGTTAGTAAATTGAAGAAGGCCCTTCCAGACCTAGAAAAAGAGGTCAGGAGGCCATCAAATTTTGCAGATTTCTATT CTTATGCTTTCCAATATTGTCTAACAGAGGAGAAACAGAAAAGCATTGACACAGAGAGCATTTGTGAATTACTTGCTCTC GTTTTGGGTTCAACATTTCCAGCCCAAGTCAACTTATTTGTGGAATATTTGAAGGCTCAAGCTGATTACAAGGTCATAAA CATGGATCAATGGATGGGATTTTTCCGGTTTTGCAATGAGATAAGTTTTCCATCACTTAATGACTATGATCCTGATCTTG CCTGGCCCTTGATCTTGGATAATTTCGTTGATTGGCTGCGAGCAAAGCAAACGTAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0351400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MRRSAAKKTGQSNSTPSVNSSAADLFRSASSKASSKESERIDSLFYSYANGSSSLIDPEGIETLCADMEIAHTDVRILML AWKMKAEEQGYFTLDEWRRGLKALRADTVSKLKKALPDLEKEVRRPSNFADFYSYAFQYCLTEEKQKSIDTESICELLAL VLGSTFPAQVNLFVEYLKAQADYKVINMDQWMGFFRFCNEISFPSLNDYDPDLAWPLILDNFVDWLRAKQT
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 24 24 - –
SignalP_GRAM_POSITIVE
SignalP-TM
1 22 22 - –
PANTHER
PTHR12281:SF12
1 230 230 1.0E-109 –
PANTHER
PTHR12281
1 230 230 1.0E-109
IPR014764
MobiDBLite
mobidb-lite
7 24 18 - –
Gene3D
G3DSA:1.10.238.10
34 124 91 3.2E-28 –
ProSiteProfiles
PS51229
36 227 192 41.927
IPR005176
Pfam
PF03556
111 225 115 9.0E-26
IPR005176
Gene3D
G3DSA:1.10.238.200
126 231 106 1.1E-25
IPR042460

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0351400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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