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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0351500 |
| Transcript ID | LotjaGi3g1v0351500.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transducin/WD40 repeat protein; TAIR: AT1G80670.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q38942|RAE1_ARATH Protein RAE1; TrEMBL-Plants: tr|I1JEL5|I1JEL5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0351500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:73037061..73043506) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCCACTTTCGGTGCCGCAAACACAAATCCAAACAAATCGCACGAGGTAATGCTCTCACCGATTCTTGTTCAATCTGA TTGCATTTGATTCAAGGTTTCACTCTCATTCAATCCTCCAATTTTGCAGGTAGCACAACCACCTTCCGATTCTGTTTCAA GTCTTTGTTTCAGTCCCAAAGCCAATTTCCTCGTCGCTACTTCATGGGACAACCAGGTTTTACCATTTCTCACTTCATTT CTTTATCTTGTACTGCACTTCATTCATGTCAATGCTCAACAACAAACCCTAATTTGATTGATGACTTCTTTTTTAATAGG TTAGGTGTTGGGAGATTTCAAAGAATGGAAATGTTGTCAACACTACGCCCAAGGCTTCAATTTCTCATGACCAACCAGTA ATCAATTTCAATTTCTAACTAAATAAATGAAAGACTTGGTTTCTTTTTACGATTTTGTGAGACTGAGGTGGTGTTGGATG GTTGTCTTGTTGTTGAAGGTTTTGTGCTCTGCTTGGAAGGATGATGGAACAACAGTTTTCTCTGGAGGCTGTGACAAGCA GGTCAAGATGTGGCCGCTTTTGTCGGGTGGACAACCAGTGACTGTTGCCATGCATGATGCTCCTATTAAAGATCTTGCGT GGATACCGGAAATTAGCCTTTTAGCCACCGGAAGTTGGGACAAAACCGTGAAGTATGTTTCTTGATTCTCTTACATTATT TACAGTGTATAGAGTCTTAGACTCTTACTTGTTTTGTGGTAACAATGCGAATTCAAGGCATGATTGCGTTCCGTGTCCTT TCTAGCATATACGAGTTATAGTCCAATTCATATGAAGATTATTTTAGCGAGTAGACAACACTGTAAAAAGCAAAATCACA TAACATTATAATGTAATAGGGAATCTGTATAAATTAGGCAAGAAAAAAGTAACACATTTCATGATCTTGTAAAAAATTTC TAATTCTGTGTTAGGGTTACAGAAACTATATGTTTGGGTCACATCTTTCCATTAACATGTAGGTAAGGTGGCCTATTTAT TCAATGCACAGCTAAGTTTGATATATTGTAGTGTGCTTATGTTTTTGGCAGTGTAATACACAGAGCTGCATTTATAATAT TCTATATGAACATGTATAGCTCGGAATTTATGGCTTCATTGCGAACACTTTATTTTTATCTTTTCATGAATTGCTGAATG GGAGGTGTCAGTAGATGTAATAAAACCATTTTATTAAGTTTTTGGGCTAATTGACTCATGACATTGTTTAAGGACCTTTA CAATCAAGGGGTAAGCAGCTCAATCCTTGCTGTCTCCATTCTTCTAAATAAAAAATTGAATTTCAGAACATAATAAAAGT GAGTTAGTGCATTGTCCACGATTCAAATACAACAACCTCTTACACGAGCCTCTTTAAGAGATGTGATAAAATAAAACCAC TCATGTTCTTAACCTAACAACTTAAGCTATGGGATTGTTAGTTCGTGATATAATATTAGAACCTCTATGATCAATTTCTT AAGAGTTTGATACGTTGCCCTCTTTCTTCTAAATAAGTGGAATTTTAGTGCTAGTCAGTGGTGGACGTTTGCATTGTCTC CACCTCAATTTCAAAGGGCTTCTGTGTGAGAAAGTTTGTTATTACAAGTCTATTCGTGAGTCTTCTCTTAACGACTTAAA TTATTGGGATCATTGTTTCTTGATAGGAAACTTTCACAAATGAGTTGTTTTCTTCTTTTGTTTGTTTATATGTTTATGAA GTTTATGATTGTCTCTTTGAGATACACTGCAATAGCTGCCATGAAATCTTCTATTATTTTGGTGGGGAAAATGCATTTCT GTTCTAGTTCCTTGGTCTATGTTGGATTACATTGAAGATTTATATCCTTATTCCATGCTTTATTTTCTTTATGTTAGGTA TTGGGATACTAGGCAGTCCAATCCAGTGCACACTCAACAACTCCCTGATCGCTGTTATGCAATTTCAGTGAAGCATCCTC TGATGGTTGTGGGGACTGCTGATAGAAATCTTGTTGTCTTCAACTTGCAGAATCCTCAGGTGATATTTTATTCTAAAATA AATTTCATAGTGTCAATGCTTGTAGTCTCGTAAGCAAAATTTTCATAATTTACTTTAGAATGTAATTTGGGAATTTAATA TTAGGAGATGAAATTTCAACTAGAAAGTCTATTATCAGTGTCCAACTGGAGCAACATCGGTGCTAGTTTATAATTTAGAA ACATTATGTAAAACATGCGTTATCTGCTTTTTCTCTAAACAAATGTAATCGGCAGTTTATACCCAATTGAACTATGGTTT TCTCGACAATTTCCACTTGCACTTCACAGGAACTAGATCCAGATCATCTGAACTTAATCAGTACAATCACACCAAGGAAA AACTCTGTATCAGTTAAATTATTCAGTACCACAAAAGTATTATAATGAATTAACTTAATGCCTCTAAATGTCTTGGTAAC CGTGTTTTTCCTTTTTAATTCGGTGAAAAATATTTTTTAATACATATTGCGATGAAGGCATGAAGCAATTATCCCATGGA GTTAATGTGTTAGAAATATAATATAAAACCATTCATGTGAGCTTTTGGGATAATTTACATCTTAGATCTTTAAGCCCCCA GCTAGTAAGAGAAAATATGGAATTTTTCGCACAGCATGCAACCATATGGAATTTATTAGAGAGATTCGGGAAAATTCAAA ATGAACCGAGGGAACCTTCAACCCAAACTGAATTCGAGTGTCTTTTTTCTTTTCTATCATGGTTTTATATGTCTGTTAAA ACTGTTTAGTTCCTTATCCAAGTTTACTGGTCATGTGATTTGTTTATATTTTTCACCTTTTCTACTATTTTTGGTTTTCT GTGATTTTGGCAGAAACACTAAGGAGATCTGATTCAATATTAATATTTGAGAAGCAATTTATTTAAATAAATGCCAACAT TATACATTTTTTCTTATGCACTGTCAAAATCCCAACAGACTGAGTACAAAAGAATTGTATCTCCCCTGAAGTATCAGACA AGATGTGTTGCTGCTTTTCCAGATCAGCAAGGTTTTCTGGTATGTATTCACTTGTCACCTACATTAAAATACTCATACAA GTGTTAACTGTTTGCCCTTTTCTTTTTTTTAATTTCATCACCGTGATGATGTGGGGCAATCCTCCACTTGGTTTGAAGCT TGTATCTCCACGCTGTGAAGAGCCTCTACAGCTCGAGGATGCTCTATGTGGAACATAGGTGTTAAAGCATTTAGACCAAC TGGGTTATCAAAGCATCATTTGCTACAAGGATTTTCGACGGATCCTATCAAATGACAATGTTGAGGCCGTATTTATTGAA AGTTAACCATATAGAAACCATAAATTGAGTTTTATATCTGTTTTTTCCTTGTTGGTATTTGTTTTGTTCATAAACAAACC AAACACCGTCAATGCTGTCTTTTCTTTCAATTTAAACAGTTTCTGGTGTCACTTGCATTCCTATTGAAGTTTTCTTGGTG TTATTGTTATCACTTTTGGTCAAATCCTTGCTGTATATTCATTGAACTCTGAAAAATTATATTGCTGATACTGTTGTTGA CTATTGTTTCTCTATAGGTTGGTTCAATAGAAGGAAGGGTTGGAGTACATCACCTGGATGATGCACAACAAAGCAAGAAT TTTACTTTTAAATGCCATAGAGAAAATAATGAGATATATTCAGTGAATTCCTTAAATTTCCATCCGGTAATACACCATAG ATATGAAAATTAGTTTAATTTCAGTTTGAAAGTTGTGGTTTGAATCTTTATTTGTGTAAGATCTTAGTTTATGTGGTTGC ATTCAGGTACATCACACTTTTGCAACTGCAGGATCTGATGGTGCTTTTAACTTTTGGGATAAGGACAGTAAACAGAGACT CAAGGTTCCTGCTTCTCTCTAAAACTCTCCTCACTAACTGATCTCTGGAATCTGCTAAACACACTTTTGTAATTTTCCCT TATAGAATAAAAGTTTTGTACCTTTATTCAGTTAGATATATAATAGAAAACATTCATATATCTTAATCCAACAACTTAGC TTTTGAGATAGTTGGTTCATGTCTTGTATCAAAGCGGTGCCATCCTCCGTGACTTGTCTTTTAACTAATACGCTGTTGAG TATCTTTCGGAACTCTTTTATAATAATGTCATTCTTCCCCCTGAAAAACAATCCGTTTGATTCTTGTTGTCCCGCCTTTT CAAGGTGCTATGTTTTATTTCGCCTACTTGTTTTTGAGGTTCCAATTGCTATTAATGCTGACCAGCGATACGCCATCACC ATGAGTTTGGTCCAGTTCTTACTATCTGTTTTTTAGGGCTTTACCGTTGTTAGCGTTATTCCACTCTATAGGGCTAAAGA ATCGAATGTTCCATCATAAGTTGTCTTAGAAGCCACTGCTCGATTGTCCTCAGTATGTCCTCACCTTCATCCTTTGTTTT TAGGGATTCAGCCTCTATAAGTGTTGACACGCTTTTTGCTATCATTGGGTGTCGAAGGTGACACCTGTTCGGTCTCAGAA GCAATCACATGTAGTCTCATGTATATTACAGGGACACATGAGGTACATACACCACCTCACTGGCCACTGGCCTTTGTTTA CATTTCTGCGTCTTCTGTTGTGGTCGTCAACTCCTTCTGGTTCTGTCTTGGTGTTTCTTTTTGTGATTACTATGTTTGCT GCTGTTGCAGCCCTATTTTATTTTTGGGTGTATCGTTGTTGGCTCACCCTAGTTCACTGCAGTGTACCACTTTTGTTCAC CGGATCAACTGACCCTGCAATAATCCTAAAGACTCAGTTTGGCTTTGCGACAATCCTAGATAAACATTCAAGTCAAGCCC CTCGTTATTTTTCTTTCTCTAGAGGATACATTTGTAACTATTAGATTTTGGGTTAGGCCTAACTCTACTCCAAAAGCTAG TTCGGGGCGAGGATTGCTCTACCCTTTATATGGATTATTTTGTCCATATCTCTAGTCAATGTGATACCTTTAACACACCC TTCACGCTCAGCCCTGGACATTTGGAGTGTATAGTTTGCAGGAATGGATATCTTTGGGTGGCCCAATAAATGAATCTAGG ATAGACTCCGATACCTTTTTAGACTTCAAGTTAGACCTAACTCTAATGATTTCTCTACCATTTATAAGGACTAGTTTGCT ATATCTCTATACAATGCGAGACCTTTAACTGTAACGAGCTTGAAGCTAATCAATCTTTAGCTTTAGAGGGAGTGTTAGAA TATAAAAAAGATATCTTATAATATCTTGTCTCTTGATCATATCTTAGAGTAATTTAAGATAATTTAGATTATTGTTTAGT ACTAGTTTCTTTGTTTCCTTATTTATATTTATTTGTTTCTCTATTTAGTTAGTATTGCAAGTCTTAATTAGTTTCCCTGT TATATTAGGATTAAGAGTATATCATTAATATAAATAAGGGTTGTACTTCTTCTTTTGTAAGATCAAACTCAATATATTAT ATGAACACAATTTTATTCCCTGTATTATTTTTTACACTTTCTAGACGTTAAAGACTAAGCCCTAGAATTTCATCATGGTA TCATAGCCTCTGACCAAATGGTCAAGATTTCAATCCCTATTGCCCCCATTGCTCTAATAAAAAAAGTTGAATTCCAACAC ATGGCATTATGCATTATCCACTCAAGACTCAAGAGTCAATTAGGCATCTGGTGACGAAGCTCGCACCTTAGCTGCCCAAA CCGATTAAGGCCTTTCATGTGTCTTCACTCTTCACTCAACATCTTAACCTTTTGGGAGAGTTAGTTCATGGCAGTTTCAT AGGATTCATCTGTATGTAACTAACTATGTTTGGCTGAGCGCAGTTATGTCCAGTCACAAACAAGATATTGTTGTTGTTAG TCTCATCTCTAGGTAGTATTTTTATCTAGGTGGTGCTGTGGGGCACTCATTCTCTAATTTTTCTGTAATTACATTAAAAT GGAAGGATTAATATATTAGTCATCAGATATGGATGTTTGTGTTTCTTCTGGGTTCTTAAAAGCACCAATTACTGTATTAA TCATGTATCAAGATCTACAAAGTAATAATATCGTCTTCTTTGCACTTTCATTTTTCATTTTGAAGTTATTTGTGTTACTG TCTTTTTACTTAATGTGTTTTGTAGGCTATGTCAAGGTGTAGTCAGCCCATACCTTGCAGTGCATTCAATAATGATGGTT CCATATATGCTTATGCGGTATGTTCTATGTTGCTGTTTTAGAAAACCAGTTATTTTACTTTGTATGCAGTTTTATATAAT TTTGCTTATGCATTTCAATTTCAGTTCGCCTTCAAAAAATAAGGATAAACTACATTTTTGTCAGTGTGTAAGATCTGATT GATATGCATATTTAACCTCTTTAAGTCTTACTCCTCTGGTCGCTCT
CDS sequence (LotjaGi3g1v0351500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCACTTTCGGTGCCGCAAACACAAATCCAAACAAATCGCACGAGGTAGCACAACCACCTTCCGATTCTGTTTCAAG TCTTTGTTTCAGTCCCAAAGCCAATTTCCTCGTCGCTACTTCATGGGACAACCAGGTTAGGTGTTGGGAGATTTCAAAGA ATGGAAATGTTGTCAACACTACGCCCAAGGCTTCAATTTCTCATGACCAACCAGTTTTGTGCTCTGCTTGGAAGGATGAT GGAACAACAGTTTTCTCTGGAGGCTGTGACAAGCAGGTCAAGATGTGGCCGCTTTTGTCGGGTGGACAACCAGTGACTGT TGCCATGCATGATGCTCCTATTAAAGATCTTGCGTGGATACCGGAAATTAGCCTTTTAGCCACCGGAAGTTGGGACAAAA CCGTGAAGTATTGGGATACTAGGCAGTCCAATCCAGTGCACACTCAACAACTCCCTGATCGCTGTTATGCAATTTCAGTG AAGCATCCTCTGATGGTTGTGGGGACTGCTGATAGAAATCTTGTTGTCTTCAACTTGCAGAATCCTCAGACTGAGTACAA AAGAATTGTATCTCCCCTGAAGTATCAGACAAGATGTGTTGCTGCTTTTCCAGATCAGCAAGGTTTTCTGGTTGGTTCAA TAGAAGGAAGGGTTGGAGTACATCACCTGGATGATGCACAACAAAGCAAGAATTTTACTTTTAAATGCCATAGAGAAAAT AATGAGATATATTCAGTGAATTCCTTAAATTTCCATCCGGTACATCACACTTTTGCAACTGCAGGATCTGATGGTGCTTT TAACTTTTGGGATAAGGACAGTAAACAGAGACTCAAGGCTATGTCAAGGTGTAGTCAGCCCATACCTTGCAGTGCATTCA ATAATGATGGTTCCATATATGCTTATGCGTTTTATATAATTTTGCTTATGCATTTCAATTTCAGTTCGCCTTCAAAAAAT AAGGATAAACTACATTTTTGTCAGTGTGTAAGATCTGATTGA
Protein sequence (LotjaGi3g1v0351500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTFGAANTNPNKSHEVAQPPSDSVSSLCFSPKANFLVATSWDNQVRCWEISKNGNVVNTTPKASISHDQPVLCSAWKDD GTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPIKDLAWIPEISLLATGSWDKTVKYWDTRQSNPVHTQQLPDRCYAISV KHPLMVVGTADRNLVVFNLQNPQTEYKRIVSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLDDAQQSKNFTFKCHREN NEIYSVNSLNFHPVHHTFATAGSDGAFNFWDKDSKQRLKAMSRCSQPIPCSAFNNDGSIYAYAFYIILLMHFNFSSPSKN KDKLHFCQCVRSD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 296 | 296 | - | – | |
| MobiDBLite | 1 | 21 | 21 | - | – | |
| Gene3D | 2 | 307 | 306 | 1.5E-103 | ||
| PANTHER | 5 | 305 | 301 | 2.5E-198 | – | |
| PANTHER | 5 | 305 | 301 | 2.5E-198 | – | |
| SMART | 11 | 50 | 40 | 2.6E-4 | ||
| ProSiteProfiles | 18 | 280 | 263 | 28.976 | ||
| ProSiteProfiles | 18 | 59 | 42 | 10.475 | ||
| SUPERFAMILY | 19 | 303 | 285 | 1.06E-53 | ||
| Pfam | 23 | 49 | 27 | 2.6E-4 | ||
| PRINTS | 37 | 51 | 15 | 9.1E-6 | ||
| SMART | 59 | 97 | 39 | 6.7E-5 | ||
| ProSiteProfiles | 65 | 106 | 42 | 10.508 | ||
| Pfam | 67 | 96 | 30 | 0.012 | ||
| SMART | 101 | 139 | 39 | 1.6E-6 | ||
| ProSiteProfiles | 107 | 148 | 42 | 14.318 | ||
| Pfam | 110 | 139 | 30 | 0.0012 | ||
| PRINTS | 126 | 140 | 15 | 9.1E-6 | ||
| SMART | 142 | 178 | 37 | 200.0 | ||
| SMART | 183 | 222 | 40 | 370.0 | ||
| SMART | 227 | 271 | 45 | 7.3E-4 | ||
| Pfam | 232 | 271 | 40 | 0.022 | ||
| ProSiteProfiles | 239 | 280 | 42 | 9.84 | ||
| PRINTS | 258 | 272 | 15 | 9.1E-6 | ||
| Phobius | 297 | 314 | 18 | - | – | |
| Phobius | 315 | 333 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0351500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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