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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0353700 |
| Transcript ID | LotjaGi3g1v0353700.5 |
| Related isoforms 8 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Topless-related protein 1; TAIR: AT1G80490.1 TOPLESS-related 1; Swiss-Prot: sp|Q0WV90|TPR1_ARATH Topless-related protein 1; TrEMBL-Plants: tr|I1KGY0|I1KGY0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0353700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:73448585..73456064) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCTTCTCTCAGTAGGGAACTGGTGTTCTTGATCTTGCAGTTTCTGGATGAGGAAAAGTTCAAAGAGACAGTTCACAA GTGGGGTTACTTTGTTGTCATTTTGTGTAAACCTATGTTTGACATGTTGTTTTCTTTTACCACATTTGTTAACTGGTTGA ATTGTCCTTTGTTGAAATAACAGGCTTGAGCAAGAGTCTGGGTTTTTCTTCAACATGAAGTATTTTGAGGATGAAGTGCA TAATGGGAATTGGGAAGAGGTTGAGAAATACCTCTCTGGATTCACAAAAGTAGATGATAATAGGTATTCCATGAAGATAT TTTTCGAGATAAGGAAACAGAAGTATCTGGAGGCATTAGACAAGTAAGCTGGAATTTTTTTTCACAATTTTGATTTTGGT GTCGTGTGTTGACTCTCAGCATTGTAGTTTCTAGTATAGAACAACTTGACTTGAACTGTTTTAAATTTTGGTAGGCATGA CCGGTCCAAGGCTGTTGAAATATTAGTGAAGGATTTGAAAGTGTTTGCTACATTCAATGAAGAACTGTTCAAGGAAATCA CCCAGCTCTTGACATTGGAGAATTTTAGGTACCAATTTGAATTTTTTACTCCCGTTTTTAGTCTAGTGTTTCTGTAAGGA CTCGGCCACTGAATGAGTTTTCGGTTATTATAGGGAAAATGAACAATTATCAAAGTATGGTGATACAAAGTCTGCACGAG CAATCATGTTGGTTGAGCTCAAAAAGCTCATTGAAGCAAATCCCTTGTTCCGTGACAAATTGCAATTTCCCAACCTTAAA AACTCGAGGTTACGGACTCTGATCAATCAAAGGTAATTTTTCCAAAGTCAAAGCATGCTTATTTCTCAATATGGAATACA AAGTAGTGCCCTGAACGTGAAATAACTCTAGTACATTATGGCCATTTGATTGCATTTAGTATCTTTATGGAGATCATCTG CTGTTGGATTCTGTGTTTATTGGTTTATACTATACACGCATCATGTTATCGTTATCCAATTGTTCGTTACGTCATATCAT TTGTAGTTTTGATTTTTGCATGTACTTTTTTTATTGTATCAATGATAGCACAGGATATGTCCATCAACTACCTATTGCAA TTTTGCTGATAGACTTTTTAACATGTATCCGTCTCCAGGACAATGTACTTCAATATATATCTTTTGCATGTCTGCTTCAA TGCAACTTTGCTGTTTTATGGTGCTTTTTTATGATTTGGTTATCTTCTATTAACAAAGAACTCGTTTTCTTTTCCTTTTT CCTTTTTTGGTTTTGTAAAAAATAAGTTACAGCTTGAATTGGCAGCATCAACTTTGCAAGAATCCACGTCCAAATCCTGA TATAAAAACTCTCTTTGTGGATCACTCATGTGGACAACCAAATGGTGCACGAGCTCCTTCACCTGCTAATAGCCCGCTAC TAGGGTCCTTACCCAAAGCTGGAGGATTTCCTCCTCTTGGTGCACACGGGGTGCGCTACTCAACTGATTATCGATCTTCT TTTAGTATCATGGGCCTCATTTAATATGTTTCTGTTATCTTTTGATTCTCATTATGGTATGGACTTTGCTGTGCCTTCAT ATTTTACAGCCTTTTCAACCTACTCCAGCACAAGTGCCAACACCCCTGGCTGGTTGGATGTCAAATCCTACCCCTGTAAC ACATGCTGCAGTTTCTGGAGGAGGAGGTATAGGTCTTGGTGCTCCATCAATCCCTGGTAATACACTCTTCCACTTTCTGT TTTTCTCCCACTCTTTGTGTAGTCATACTAAGAGCTCAGAGACTTTCTTATTTGACATTTGAGTCTGATGTGTTTCATTT CCTTGTCAAGCTGCTTTGAAGCATCCTAGGACCCCTCCAACTAATCCCTCTGTCGACTATCCGTCTGGAGATTCTGATCA TGTTGCTAAGAGACCAAGGCCAATGGGAATTTCAGATGAGGTAATACAGTATCACTTATGGACACGTTAGCAATTCATTC CTAGGCATATGCAAGTATTGATCCCTCATATTTTTGCTATCTGTATGTAGGTAAATCTACCTGTGAATGTGTTGTCAGCA TCATTCTCGGGTCATGGTCATGGTCATGGTCAGGCTTTTAGTGCACCTGATGATTTACCAAAGACTGTCGTGCGAACTCT GAACCAGGGTTCAACTCCTATGAGCATGGACTTTCATCCAGTTCAACAAACTTTGCTTCTTGGTTTGTTGCTCTTCTTGA GGCTTTTTAAAATGTTAATTTTTTTAGTTGCATGTAATTTCTATCAAATTGCCATTTGACTGTGTTTTCGTGATGTGATG TCAGTTGGTACGAATGTGGGGGACATTGCTTTATGGGAAGTCGGTTCAAGGGATAGGTTGGTCTCAAGGAACTTCAAAGT TTGGGATCTAAGTGCATGTTCAATGACGTTTCAGGTTCTCTCTTTACCTTTACTCATTAATGTTCTTGATGATAATTTGT ACTGAACGAAGAGAAAACTAATCTTGACCAACTCAGGCTGCTCTTGTCAAAGATCCTGGTGTTTCTGTTAACCGAGTGAT TTGGAGTCCTGATGGTGCTTTATTTGGTAAGTTGAGAATTTTTTAGTTTTCCAATGTTAGATACGATGATACTTAATTTT TAATTTGTTTTTTTAGTAAAGCATCGATACGGCGATATTATATAAATGTATACTTTTAAATGATGACTGAACCAATTACC AATGTCCTGAGTTTATTCAATTTACAGGGGTTGCTTACTCTAGGCACATTGTTCAGATATACTCTTACCATGGTGGGGAT GAAGTGCGACAACATCTGGAGGTACACCCATGCAAATACACACGACACACATGCACAAATATATAGGCATTTTTGTCATT GTTTACTTATGAATCTATTTTCTAGATTGATGCTCATGTTGGTGGAGTAAATGATCTTGCATTTTCCCACCCAAATAAGC AACTATGTGTGATAACCTGTGGTGATGATAAGACCATTAAGGTAAGTTTTGTCAATTCATTAATTTGATTTATTGAAGTG GAGACCAATACGTTTCTAACTATATTATGTAATTTAAGGTGTGGGATGCAGCTTCAGGTGCAAAGCAGTATACTTTTGAA GGTCATGAGGCTCCAGTTTATTCTGTCTGCCCACATTACAAAGAGAACATTCAGGTAGAAATTGACTTCAATATCTGTGA GGAGAATATTAGCTTAGTTTGTTGCCGTGTTCTGGTTTTGCTATTTAATATATTACCCAAAAGGGAAACTATTTCACTAT TTCTTCTGGTTGATTTTCTTGCTAATACTCCTTGTGTTGTTGCAGTTCATCTTTTCAACAGCATTAGATGGAAAAATAAA AGCATGGTTGTATGACAATTTGGGATCTCGCGTTGATTATGATGCTCCTGGTCGATGGTGCACAACCATGGCTTACAGTG CTGATGGTACAAGGTCCATATTCTCAACCATGGCCCCATGTATCGTGCTGAACATTCGAATTTTTTAATTTTACTTCCCA TTGTCATCCACTTTATGTTCAAATGTTTTTGGCTGTGATTGTATTACTATAGGCTCTTTTCATGTGGAACAAGCAAAGAG GGGGAATCCTCTATTGTGGAGTGGAACGAAAGTGAAGGAGCTGTAAAAAGGACTTATCAAGGATTCCGTAAGCGATCTAT GGGTGTTGTGCAATTTGATACTACCAAAAACCGATTTTTGGCTGCTGGTGATGATTTCTCCATCAAGTTTTGGGATATGG ACAATGTTCAGCTTTTGACTACTGTTGATGCTGATGGGGGTCTCGCTGTAAGTTCCTTATTATATTGCGAATCAAAAAGC TAGTATTTGGAAATAGTAATTGCTAATTGTTGTTTGATCTAAACTCTAGGCAAGCCCACGTATTCGTTTCAACAAGGACG GAACTCTTTTAGCTGTCTCTGCAAATGAGAATGGAATTAAAATTTTAGCCAATGGAGATGGTAATCGTTTATTGCGTACA TTAGAGAATTCTATATATGATGCATCAAGAACATCAGAAGCCTTGGCAAAGGTAGTGTAATAGATGTTATACTTTCCTCA CCTCATATTAATAAAACCTAATCTAACACAATGTTTGTGGCAGCCTACAATAAATCCAATTTCTGCTGCGGCTGCGGCTG CAACTAGTGCTGCACTTGCAGAGAGGGCCTCATCTGTAGTAGCTATTACTGGAATGGTTTGTGATCTTGTCCTATCTTGG ATTTTACTCGTAGCTTATTTCCTTTTTAATGTTCATTTGGTCTCTGAATTAGCAACTTGGCTGATGTCAGTGACTATCTT GTCATGAATATTATTATTATTAATTAATTAATTAAACTACATGTCAATTTCATCTCATCAGAATGGGGATCCCCGAAACT TGGGCGACGTTAAACCTAGAATAAGCGAAGAATCCAATGACAAGTCAAAAATATGGAAGCTCACTGAAATTAATGAACCA TCTCAATGCAGAACCTTGAAGCTAGTGGAGAATCCTAGAGTAAACAAGGTATGTTATTTACTTCAAATTTATCAAACACC CTTCATAGAAATTACAGTAACAAAATCTGATTGTAACTTTGCCTTTCTCAGCAACCTGATTTTTAATTGCCCAATAAAAA GAGCCTGGCATGTGTCTACATGTATTTTTGTATGCCATCCTTTGATGTTTGTAACTGCTTGGTCTAGGTTCTCCTCTATA TGCAAAAGTTTTGGTGGTACCATAGTTTTATATCAGAGCCAAGTAGCCTGCAATAATGATTTATGATTCACTATAATTAC CAAGGAAAAGACGTGAGTTTAGTAAGGGTGTGTCCATCTTAATTTAACCTAAAGTGCATCATGATCCTAATCAATAGGTG ACTTGAGAGTGGTTACACCCTTACTTGCTCATGTCAGAGGAACATTTCCAATAATCTTGTAACACAAGTATCTAATAGTA GCTTTATGCAACTTAGGATAATTGATGATTTACCTCCTCCTATTTACTAGTAAAATCTCTCATCTTATAAGCAAAACTTG TGATACCAGTTTATATTACCACTTCGTACATGGTGGATTTAATGTAGGACCTGAAGTTGTTTAGTATTTGACTGTTTGGT TAATTTGCTGTTTTTTCATATAATTTCTTCTGTCTTATCTGTAACTTATTGTAGTTATTTATGCTAATGCCACGCTAGAT GGTCACATTAAAGTGTTTTAAGTATAAAATAGCATTTATATGAAATTATTTTTATTTCTAAATATGGGTTGAAACAATAG TGTAACCTTCCTTCTCTGAATTTTCTCTACCTCGCCCCTCTCCAAAAATGAATTTTTTTTATCTTTGTTATGACAGATAT CAAGGTTGATATATACAAATTCAGGTAATGCTATTCTAGCATTAGCATCGAATGCCATTCACCTGCTCTGGAAATGGCAG CGAACTGACCGCAGCTCATCTGGCAAGGTATGGGACGTGTGAAGTTACTTCTGTTAGACTACTACAATTCTCTATTCAGA AACTGGAAATATGAAATTTACCGTATTCTTATGTTGATATTTAATTCTGTAGGCCAATGCCACCGTGCAACCTCAGTTGT GGCAACCATCAAGTGGCATCCTGATGACTAATGACATTGCTGATGGCAATCCGGAGGAAGCTTTAGCCTGTTTTGCTCTG TCCAAAAATGATTCATATGTAATGTCTGCATCAGGAGGGAAGGTATCCTTGTTCAATATGATGACGTTTAAGGTAATCTA CGAGCCTGGCCATTCTTCAAGAGTCAAGACTATGTTTTGTGATTAAGAGTTACGCCTATTAACCAATTTTAATATTCTTG CATATGCGCAGACAATGACTACTTTCATGCCTCCGCCGCCTGCAGCAACCTTTCTTGCTTTCCATCCTCAGGATAACAAT ATTATTGCTATAGGCATGGATGATTCCTCTATTCAGATATATAATGTCCGTGTTGATGAGGTAATTAACAGTGCTGTCTG TAAACAAGTTCTAACCTTGAGTTGAGATTTTGCTGTTAATGACAAGTTCTTTGGCAGGTTAAAAGTAAACTCAAAGGCCA TACAAAGAAAATAACTGGTCTTGCTTTCTCACATGTATTGAATGTTCTAGTTTCATCTGGGGCTGATAATCAGGTAATAA TTGCCCAATGTAGATCTTCTAAATCTAGCTTTTCTATGATTATATTGAACTAAAAAAACTTGTAAGAGTTGAATCTTTGA GTAGATTTTGTCAACCATAGATCCCCTTTGAGTTTTCATACATGGAGAGTTACCTCTGAGCTCTGTTTATTATGTAGATT TGTGTGTGGAATACTAATGGATGGGAGAAACAAAAGACTAGGTTCTTGCAGCTTCCGCACGGGAGGACTCCACCAGCACA ATCTGATACTCGTGTACAGTTTCATCAGGATCAGATACACTTCTTGGTTGTACATGAAACTCAGCTTGCCATTTATGAAG CAACAAAACTGGAAGGACTAAAGCAGGTTAGCCCATTGAGTTCAATTAATGTGTTGTCTGAATAATAATGTCATTTTGTT CTGTTTTTCTGATTTTGATGTCAAATTGTAGTGGTTCCCACAAGATTCTGCGGCACCAATATCGCATGCAACTTTCTCAT GTGATAGCCAGCTGATATACGCCAGCTTTTTAGACGCAACAATCTGTGTATTTAGTGCTTCAAATCTCAGATTACGCTGC CGTATCAATCCTTCTGCTTATCTCCCATCAAGTGTCAGGTAACCCCCCTTGCTTATCTTCCTACTTAACTTCCTGCAATG TTATTGGCCTATGGTATTCATATTGGATGAATGTAAATTTTCTTTTAATGCTTCAAAATCTATATGTATGCCAAACTACC ACCTGTAAATTGGAAAGAGTTTTTTGTGAATTTGAATAAAAATATATGGCTTGCTTTAACATCTGAACCTGTTAGATGAT GAGACTCAATCTTTGTTCAGGTAGTGAAACTCAATCTAGACTGGATCTGATTGTGCCATTGTGAATAGTTGTCACTTTTT GAAGTTAACCTGGTTATTCTAAATCTAGACTTATTTTATGTTCATAAAAACTCCTCCTATGCTGTTTCATAGCTAGCCCT TGGTCTGGGTAAAAGGAGGAATGTTGTGTTAGGCCTGTGGCAGTGGTCGACCATACAGTCAATATCACCTAATGGGATTA GACTTTTGTTGTACTATATATTTATAATAATAACCTATCAATCTACTTTTTGTTGACACTGTTTTTACGTAGCAGTTCCA ACGTGCAACCACTTGTAATCGCCGCACATCCGCAAGAACCGAATCAGTTTGCTACAGGACTGTCAGATGGTACCGTTCAT GTGTTTGAGCCCCTCGAGTCTGACGGCAAGTGGGGTGTGCCTCCTCCGATTGAGAATGGTTCAGCAAGCAATGTGGCAGC TGCTTCAGGTGGACCTTCTTCGGAACAAGCTCAAAGATGA
CDS sequence (LotjaGi3g1v0353700.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATGGGGATCCCCGAAACTTGGGCGACGTTAAACCTAGAATAAGCGAAGAATCCAATGACAAGTCAAAAATATGGAA GCTCACTGAAATTAATGAACCATCTCAATGCAGAACCTTGAAGCTAGTGGAGAATCCTAGAGTAAACAAGATATCAAGGT TGATATATACAAATTCAGGTAATGCTATTCTAGCATTAGCATCGAATGCCATTCACCTGCTCTGGAAATGGCAGCGAACT GACCGCAGCTCATCTGGCAAGGCCAATGCCACCGTGCAACCTCAGTTGTGGCAACCATCAAGTGGCATCCTGATGACTAA TGACATTGCTGATGGCAATCCGGAGGAAGCTTTAGCCTGTTTTGCTCTGTCCAAAAATGATTCATATGTAATGTCTGCAT CAGGAGGGAAGGTATCCTTGTTCAATATGATGACGTTTAAGACAATGACTACTTTCATGCCTCCGCCGCCTGCAGCAACC TTTCTTGCTTTCCATCCTCAGGATAACAATATTATTGCTATAGGCATGGATGATTCCTCTATTCAGATATATAATGTCCG TGTTGATGAGGTTAAAAGTAAACTCAAAGGCCATACAAAGAAAATAACTGGTCTTGCTTTCTCACATGTATTGAATGTTC TAGTTTCATCTGGGGCTGATAATCAGATTTGTGTGTGGAATACTAATGGATGGGAGAAACAAAAGACTAGGTTCTTGCAG CTTCCGCACGGGAGGACTCCACCAGCACAATCTGATACTCGTGTACAGTTTCATCAGGATCAGATACACTTCTTGGTTGT ACATGAAACTCAGCTTGCCATTTATGAAGCAACAAAACTGGAAGGACTAAAGCAGTGGTTCCCACAAGATTCTGCGGCAC CAATATCGCATGCAACTTTCTCATGTGATAGCCAGCTGATATACGCCAGCTTTTTAGACGCAACAATCTGTGTATTTAGT GCTTCAAATCTCAGATTACGCTGCCGTATCAATCCTTCTGCTTATCTCCCATCAAGTGTCAGCAGTTCCAACGTGCAACC ACTTGTAATCGCCGCACATCCGCAAGAACCGAATCAGTTTGCTACAGGACTGTCAGATGGTACCGTTCATGTGTTTGAGC CCCTCGAGTCTGACGGCAAGTGGGGTGTGCCTCCTCCGATTGAGAATGGTTCAGCAAGCAATGTGGCAGCTGCTTCAGGT GGACCTTCTTCGGAACAAGCTCAAAGATGA
Protein sequence (LotjaGi3g1v0353700.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNGDPRNLGDVKPRISEESNDKSKIWKLTEINEPSQCRTLKLVENPRVNKISRLIYTNSGNAILALASNAIHLLWKWQRT DRSSSGKANATVQPQLWQPSSGILMTNDIADGNPEEALACFALSKNDSYVMSASGGKVSLFNMMTFKTMTTFMPPPPAAT FLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKKITGLAFSHVLNVLVSSGADNQICVWNTNGWEKQKTRFLQ LPHGRTPPAQSDTRVQFHQDQIHFLVVHETQLAIYEATKLEGLKQWFPQDSAAPISHATFSCDSQLIYASFLDATICVFS ASNLRLRCRINPSAYLPSSVSSSNVQPLVIAAHPQEPNQFATGLSDGTVHVFEPLESDGKWGVPPPIENGSASNVAAASG GPSSEQAQR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 409 | 409 | 6.8E-266 | – | |
| PANTHER | 1 | 409 | 409 | 6.8E-266 | ||
| Gene3D | 17 | 269 | 253 | 1.2E-27 | ||
| SMART | 105 | 142 | 38 | 270.0 | ||
| SUPERFAMILY | 115 | 374 | 260 | 4.12E-38 | ||
| SMART | 145 | 185 | 41 | 2.6 | ||
| ProSiteProfiles | 152 | 236 | 85 | 14.872 | ||
| SMART | 188 | 227 | 40 | 8.9E-7 | ||
| Pfam | 194 | 227 | 34 | 1.5E-4 | ||
| ProSiteProfiles | 195 | 236 | 42 | 12.747 | ||
| ProSitePatterns | 214 | 228 | 15 | - | ||
| Gene3D | 271 | 407 | 137 | 6.7E-6 | ||
| SMART | 280 | 320 | 41 | 13.0 | ||
| SMART | 333 | 373 | 41 | 11.0 | ||
| MobiDBLite | 376 | 409 | 34 | - | – | |
| MobiDBLite | 392 | 409 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi3g1v0353700.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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