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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0353700 |
| Transcript ID | LotjaGi3g1v0353700.9 |
| Related isoforms 8 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Topless-related protein 1; TAIR: AT1G80490.1 TOPLESS-related 1; Swiss-Prot: sp|Q0WV90|TPR1_ARATH Topless-related protein 1; TrEMBL-Plants: tr|V7AR41|V7AR41_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0353700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:73448708..73456064) extracted from Lotus japonicus Gifu genome v1.2.
ATGTTGTTTTCTTTTACCACATTTGTTAACTGGTTGAATTGTCCTTTGTTGAAATAACAGGCTTGAGCAAGAGTCTGGGT TTTTCTTCAACATGAAGTATTTTGAGGATGAAGTGCATAATGGGAATTGGGAAGAGGTTGAGAAATACCTCTCTGGATTC ACAAAAGTAGATGATAATAGGTATTCCATGAAGATATTTTTCGAGATAAGGAAACAGAAGTATCTGGAGGCATTAGACAA GTAAGCTGGAATTTTTTTTCACAATTTTGATTTTGGTGTCGTGTGTTGACTCTCAGCATTGTAGTTTCTAGTATAGAACA ACTTGACTTGAACTGTTTTAAATTTTGGTAGGCATGACCGGTCCAAGGCTGTTGAAATATTAGTGAAGGATTTGAAAGTG TTTGCTACATTCAATGAAGAACTGTTCAAGGAAATCACCCAGCTCTTGACATTGGAGAATTTTAGGTACCAATTTGAATT TTTTACTCCCGTTTTTAGTCTAGTGTTTCTGTAAGGACTCGGCCACTGAATGAGTTTTCGGTTATTATAGGGAAAATGAA CAATTATCAAAGTATGGTGATACAAAGTCTGCACGAGCAATCATGTTGGTTGAGCTCAAAAAGCTCATTGAAGCAAATCC CTTGTTCCGTGACAAATTGCAATTTCCCAACCTTAAAAACTCGAGGTTACGGACTCTGATCAATCAAAGGTAATTTTTCC AAAGTCAAAGCATGCTTATTTCTCAATATGGAATACAAAGTAGTGCCCTGAACGTGAAATAACTCTAGTACATTATGGCC ATTTGATTGCATTTAGTATCTTTATGGAGATCATCTGCTGTTGGATTCTGTGTTTATTGGTTTATACTATACACGCATCA TGTTATCGTTATCCAATTGTTCGTTACGTCATATCATTTGTAGTTTTGATTTTTGCATGTACTTTTTTTATTGTATCAAT GATAGCACAGGATATGTCCATCAACTACCTATTGCAATTTTGCTGATAGACTTTTTAACATGTATCCGTCTCCAGGACAA TGTACTTCAATATATATCTTTTGCATGTCTGCTTCAATGCAACTTTGCTGTTTTATGGTGCTTTTTTATGATTTGGTTAT CTTCTATTAACAAAGAACTCGTTTTCTTTTCCTTTTTCCTTTTTTGGTTTTGTAAAAAATAAGTTACAGCTTGAATTGGC AGCATCAACTTTGCAAGAATCCACGTCCAAATCCTGATATAAAAACTCTCTTTGTGGATCACTCATGTGGACAACCAAAT GGTGCACGAGCTCCTTCACCTGCTAATAGCCCGCTACTAGGGTCCTTACCCAAAGCTGGAGGATTTCCTCCTCTTGGTGC ACACGGGGTGCGCTACTCAACTGATTATCGATCTTCTTTTAGTATCATGGGCCTCATTTAATATGTTTCTGTTATCTTTT GATTCTCATTATGGTATGGACTTTGCTGTGCCTTCATATTTTACAGCCTTTTCAACCTACTCCAGCACAAGTGCCAACAC CCCTGGCTGGTTGGATGTCAAATCCTACCCCTGTAACACATGCTGCAGTTTCTGGAGGAGGAGGTATAGGTCTTGGTGCT CCATCAATCCCTGGTAATACACTCTTCCACTTTCTGTTTTTCTCCCACTCTTTGTGTAGTCATACTAAGAGCTCAGAGAC TTTCTTATTTGACATTTGAGTCTGATGTGTTTCATTTCCTTGTCAAGCTGCTTTGAAGCATCCTAGGACCCCTCCAACTA ATCCCTCTGTCGACTATCCGTCTGGAGATTCTGATCATGTTGCTAAGAGACCAAGGCCAATGGGAATTTCAGATGAGGTA ATACAGTATCACTTATGGACACGTTAGCAATTCATTCCTAGGCATATGCAAGTATTGATCCCTCATATTTTTGCTATCTG TATGTAGGTAAATCTACCTGTGAATGTGTTGTCAGCATCATTCTCGGGTCATGGTCATGGTCATGGTCAGGCTTTTAGTG CACCTGATGATTTACCAAAGACTGTCGTGCGAACTCTGAACCAGGGTTCAACTCCTATGAGCATGGACTTTCATCCAGTT CAACAAACTTTGCTTCTTGGTTTGTTGCTCTTCTTGAGGCTTTTTAAAATGTTAATTTTTTTAGTTGCATGTAATTTCTA TCAAATTGCCATTTGACTGTGTTTTCGTGATGTGATGTCAGTTGGTACGAATGTGGGGGACATTGCTTTATGGGAAGTCG GTTCAAGGGATAGGTTGGTCTCAAGGAACTTCAAAGTTTGGGATCTAAGTGCATGTTCAATGACGTTTCAGGTTCTCTCT TTACCTTTACTCATTAATGTTCTTGATGATAATTTGTACTGAACGAAGAGAAAACTAATCTTGACCAACTCAGGCTGCTC TTGTCAAAGATCCTGGTGTTTCTGTTAACCGAGTGATTTGGAGTCCTGATGGTGCTTTATTTGGTAAGTTGAGAATTTTT TAGTTTTCCAATGTTAGATACGATGATACTTAATTTTTAATTTGTTTTTTTAGTAAAGCATCGATACGGCGATATTATAT AAATGTATACTTTTAAATGATGACTGAACCAATTACCAATGTCCTGAGTTTATTCAATTTACAGGGGTTGCTTACTCTAG GCACATTGTTCAGATATACTCTTACCATGGTGGGGATGAAGTGCGACAACATCTGGAGGTACACCCATGCAAATACACAC GACACACATGCACAAATATATAGGCATTTTTGTCATTGTTTACTTATGAATCTATTTTCTAGATTGATGCTCATGTTGGT GGAGTAAATGATCTTGCATTTTCCCACCCAAATAAGCAACTATGTGTGATAACCTGTGGTGATGATAAGACCATTAAGGT AAGTTTTGTCAATTCATTAATTTGATTTATTGAAGTGGAGACCAATACGTTTCTAACTATATTATGTAATTTAAGGTGTG GGATGCAGCTTCAGGTGCAAAGCAGTATACTTTTGAAGGTCATGAGGCTCCAGTTTATTCTGTCTGCCCACATTACAAAG AGAACATTCAGGTAGAAATTGACTTCAATATCTGTGAGGAGAATATTAGCTTAGTTTGTTGCCGTGTTCTGGTTTTGCTA TTTAATATATTACCCAAAAGGGAAACTATTTCACTATTTCTTCTGGTTGATTTTCTTGCTAATACTCCTTGTGTTGTTGC AGTTCATCTTTTCAACAGCATTAGATGGAAAAATAAAAGCATGGTTGTATGACAATTTGGGATCTCGCGTTGATTATGAT GCTCCTGGTCGATGGTGCACAACCATGGCTTACAGTGCTGATGGTACAAGGTCCATATTCTCAACCATGGCCCCATGTAT CGTGCTGAACATTCGAATTTTTTAATTTTACTTCCCATTGTCATCCACTTTATGTTCAAATGTTTTTGGCTGTGATTGTA TTACTATAGGCTCTTTTCATGTGGAACAAGCAAAGAGGGGGAATCCTCTATTGTGGAGTGGAACGAAAGTGAAGGAGCTG TAAAAAGGACTTATCAAGGATTCCGTAAGCGATCTATGGGTGTTGTGCAATTTGATACTACCAAAAACCGATTTTTGGCT GCTGGTGATGATTTCTCCATCAAGTTTTGGGATATGGACAATGTTCAGCTTTTGACTACTGTTGATGCTGATGGGGGTCT CGCTGTAAGTTCCTTATTATATTGCGAATCAAAAAGCTAGTATTTGGAAATAGTAATTGCTAATTGTTGTTTGATCTAAA CTCTAGGCAAGCCCACGTATTCGTTTCAACAAGGACGGAACTCTTTTAGCTGTCTCTGCAAATGAGAATGGAATTAAAAT TTTAGCCAATGGAGATGGTAATCGTTTATTGCGTACATTAGAGAATTCTATATATGATGCATCAAGAACATCAGAAGCCT TGGCAAAGGTAGTGTAATAGATGTTATACTTTCCTCACCTCATATTAATAAAACCTAATCTAACACAATGTTTGTGGCAG CCTACAATAAATCCAATTTCTGCTGCGGCTGCGGCTGCAACTAGTGCTGCACTTGCAGAGAGGGCCTCATCTGTAGTAGC TATTACTGGAATGGTTTGTGATCTTGTCCTATCTTGGATTTTACTCGTAGCTTATTTCCTTTTTAATGTTCATTTGGTCT CTGAATTAGCAACTTGGCTGATGTCAGTGACTATCTTGTCATGAATATTATTATTATTAATTAATTAATTAAACTACATG TCAATTTCATCTCATCAGAATGGGGATCCCCGAAACTTGGGCGACGTTAAACCTAGAATAAGCGAAGAATCCAATGACAA GTCAAAAATATGGAAGCTCACTGAAATTAATGAACCATCTCAATGCAGAACCTTGAAGCTAGTGGAGAATCCTAGAGTAA ACAAGGTATGTTATTTACTTCAAATTTATCAAACACCCTTCATAGAAATTACAGTAACAAAATCTGATTGTAACTTTGCC TTTCTCAGCAACCTGATTTTTAATTGCCCAATAAAAAGAGCCTGGCATGTGTCTACATGTATTTTTGTATGCCATCCTTT GATGTTTGTAACTGCTTGGTCTAGGTTCTCCTCTATATGCAAAAGTTTTGGTGGTACCATAGTTTTATATCAGAGCCAAG TAGCCTGCAATAATGATTTATGATTCACTATAATTACCAAGGAAAAGACGTGAGTTTAGTAAGGGTGTGTCCATCTTAAT TTAACCTAAAGTGCATCATGATCCTAATCAATAGGTGACTTGAGAGTGGTTACACCCTTACTTGCTCATGTCAGAGGAAC ATTTCCAATAATCTTGTAACACAAGTATCTAATAGTAGCTTTATGCAACTTAGGATAATTGATGATTTACCTCCTCCTAT TTACTAGTAAAATCTCTCATCTTATAAGCAAAACTTGTGATACCAGTTTATATTACCACTTCGTACATGGTGGATTTAAT GTAGGACCTGAAGTTGTTTAGTATTTGACTGTTTGGTTAATTTGCTGTTTTTTCATATAATTTCTTCTGTCTTATCTGTA ACTTATTGTAGTTATTTATGCTAATGCCACGCTAGATGGTCACATTAAAGTGTTTTAAGTATAAAATAGCATTTATATGA AATTATTTTTATTTCTAAATATGGGTTGAAACAATAGTGTAACCTTCCTTCTCTGAATTTTCTCTACCTCGCCCCTCTCC AAAAATGAATTTTTTTTATCTTTGTTATGACAGATATCAAGGTTGATATATACAAATTCAGGTAATGCTATTCTAGCATT AGCATCGAATGCCATTCACCTGCTCTGGAAATGGCAGCGAACTGACCGCAGCTCATCTGGCAAGGTATGGGACGTGTGAA GTTACTTCTGTTAGACTACTACAATTCTCTATTCAGAAACTGGAAATATGAAATTTACCGTATTCTTATGTTGATATTTA ATTCTGTAGGCCAATGCCACCGTGCAACCTCAGTTGTGGCAACCATCAAGTGGCATCCTGATGACTAATGACATTGCTGA TGGCAATCCGGAGGAAGCTTTAGCCTGTTTTGCTCTGTCCAAAAATGATTCATATGTAATGTCTGCATCAGGAGGGAAGG TATCCTTGTTCAATATGATGACGTTTAAGGTAATCTACGAGCCTGGCCATTCTTCAAGAGTCAAGACTATGTTTTGTGAT TAAGAGTTACGCCTATTAACCAATTTTAATATTCTTGCATATGCGCAGACAATGACTACTTTCATGCCTCCGCCGCCTGC AGCAACCTTTCTTGCTTTCCATCCTCAGGATAACAATATTATTGCTATAGGCATGGATGATTCCTCTATTCAGATATATA ATGTCCGTGTTGATGAGGTAATTAACAGTGCTGTCTGTAAACAAGTTCTAACCTTGAGTTGAGATTTTGCTGTTAATGAC AAGTTCTTTGGCAGGTTAAAAGTAAACTCAAAGGCCATACAAAGAAAATAACTGGTCTTGCTTTCTCACATGTATTGAAT GTTCTAGTTTCATCTGGGGCTGATAATCAGGTAATAATTGCCCAATGTAGATCTTCTAAATCTAGCTTTTCTATGATTAT ATTGAACTAAAAAAACTTGTAAGAGTTGAATCTTTGAGTAGATTTTGTCAACCATAGATCCCCTTTGAGTTTTCATACAT GGAGAGTTACCTCTGAGCTCTGTTTATTATGTAGATTTGTGTGTGGAATACTAATGGATGGGAGAAACAAAAGACTAGGT TCTTGCAGCTTCCGCACGGGAGGACTCCACCAGCACAATCTGATACTCGTGTACAGTTTCATCAGGATCAGATACACTTC TTGGTTGTACATGAAACTCAGCTTGCCATTTATGAAGCAACAAAACTGGAAGGACTAAAGCAGGTTAGCCCATTGAGTTC AATTAATGTGTTGTCTGAATAATAATGTCATTTTGTTCTGTTTTTCTGATTTTGATGTCAAATTGTAGTGGTTCCCACAA GATTCTGCGGCACCAATATCGCATGCAACTTTCTCATGTGATAGCCAGCTGATATACGCCAGCTTTTTAGACGCAACAAT CTGTGTATTTAGTGCTTCAAATCTCAGATTACGCTGCCGTATCAATCCTTCTGCTTATCTCCCATCAAGTGTCAGGTAAC CCCCCTTGCTTATCTTCCTACTTAACTTCCTGCAATGTTATTGGCCTATGGTATTCATATTGGATGAATGTAAATTTTCT TTTAATGCTTCAAAATCTATATGTATGCCAAACTACCACCTGTAAATTGGAAAGAGTTTTTTGTGAATTTGAATAAAAAT ATATGGCTTGCTTTAACATCTGAACCTGTTAGATGATGAGACTCAATCTTTGTTCAGGTAGTGAAACTCAATCTAGACTG GATCTGATTGTGCCATTGTGAATAGTTGTCACTTTTTGAAGTTAACCTGGTTATTCTAAATCTAGACTTATTTTATGTTC ATAAAAACTCCTCCTATGCTGTTTCATAGCTAGCCCTTGGTCTGGGTAAAAGGAGGAATGTTGTGTTAGGCCTGTGGCAG TGGTCGACCATACAGTCAATATCACCTAATGGGATTAGACTTTTGTTGTACTATATATTTATAATAATAACCTATCAATC TACTTTTTGTTGACACTGTTTTTACGTAGCAGTTCCAACGTGCAACCACTTGTAATCGCCGCACATCCGCAAGAACCGAA TCAGTTTGCTACAGGACTGTCAGATGGTACCGTTCATGTGTTTGAGCCCCTCGAGTCTGACGGCAAGTGGGGTGTGCCTC CTCCGATTGAGAATGGTTCAGCAAGCAATGTGGCAGCTGCTTCAGGTGGACCTTCTTCGGAACAAGCTCAAAGATGA
CDS sequence (LotjaGi3g1v0353700.9) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTAATGACATTGCTGATGGCAATCCGGAGGAAGCTTTAGCCTGTTTTGCTCTGTCCAAAAATGATTCATATGTAAT GTCTGCATCAGGAGGGAAGGTATCCTTGTTCAATATGATGACGTTTAAGACAATGACTACTTTCATGCCTCCGCCGCCTG CAGCAACCTTTCTTGCTTTCCATCCTCAGGATAACAATATTATTGCTATAGGCATGGATGATTCCTCTATTCAGATATAT AATGTCCGTGTTGATGAGGTTAAAAGTAAACTCAAAGGCCATACAAAGAAAATAACTGGTCTTGCTTTCTCACATGTATT GAATGTTCTAGTTTCATCTGGGGCTGATAATCAGATTTGTGTGTGGAATACTAATGGATGGGAGAAACAAAAGACTAGGT TCTTGCAGCTTCCGCACGGGAGGACTCCACCAGCACAATCTGATACTCGTGTACAGTTTCATCAGGATCAGATACACTTC TTGGTTTGGTTCCCACAAGATTCTGCGGCACCAATATCGCATGCAACTTTCTCATGTGATAGCCAGCTGATATACGCCAG CTTTTTAGACGCAACAATCTGTGTATTTAGTGCTTCAAATCTCAGATTACGCTGCCGTATCAATCCTTCTGCTTATCTCC CATCAAGTGTCAGCAGTTCCAACGTGCAACCACTTGTAATCGCCGCACATCCGCAAGAACCGAATCAGTTTGCTACAGGA CTGTCAGATGGTACCGTTCATGTGTTTGAGCCCCTCGAGTCTGACGGCAAGTGGGGTGTGCCTCCTCCGATTGAGAATGG TTCAGCAAGCAATGTGGCAGCTGCTTCAGGTGGACCTTCTTCGGAACAAGCTCAAAGATGA
Protein sequence (LotjaGi3g1v0353700.9) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTNDIADGNPEEALACFALSKNDSYVMSASGGKVSLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY NVRVDEVKSKLKGHTKKITGLAFSHVLNVLVSSGADNQICVWNTNGWEKQKTRFLQLPHGRTPPAQSDTRVQFHQDQIHF LVWFPQDSAAPISHATFSCDSQLIYASFLDATICVFSASNLRLRCRINPSAYLPSSVSSSNVQPLVIAAHPQEPNQFATG LSDGTVHVFEPLESDGKWGVPPPIENGSASNVAAASGGPSSEQAQR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SMART | 1 | 38 | 38 | 270.0 | ||
| PANTHER | 1 | 286 | 286 | 1.5E-173 | ||
| PANTHER | 1 | 286 | 286 | 1.5E-173 | – | |
| Gene3D | 2 | 165 | 164 | 4.2E-25 | ||
| SUPERFAMILY | 13 | 255 | 243 | 8.63E-36 | ||
| SMART | 41 | 81 | 41 | 2.6 | ||
| ProSiteProfiles | 48 | 132 | 85 | 14.872 | ||
| SMART | 84 | 123 | 40 | 8.9E-7 | ||
| Pfam | 89 | 123 | 35 | 9.2E-5 | ||
| ProSiteProfiles | 91 | 132 | 42 | 12.747 | ||
| ProSitePatterns | 110 | 124 | 15 | - | ||
| SMART | 157 | 197 | 41 | 16.0 | ||
| Gene3D | 166 | 285 | 120 | 4.2E-6 | ||
| SMART | 210 | 250 | 41 | 11.0 | ||
| MobiDBLite | 253 | 286 | 34 | - | – | |
| MobiDBLite | 269 | 286 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi3g1v0353700.9, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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