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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0356500 |
| Transcript ID | LotjaGi3g1v0356500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Methyl-CpG-binding domain protein; TAIR: AT1G15340.1 methyl-CPG-binding domain 10; Swiss-Prot: sp|Q9XI36|MBD10_ARATH Methyl-CpG-binding domain-containing protein 10; TrEMBL-Plants: tr|I3SMM8|I3SMM8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0356500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:73822440..73825787) extracted from Lotus japonicus Gifu genome v1.2.
GTGAGTTTATCGAAACCCGATTTCAAAATTCAATTTAGCTACGTTTATGAGAGAGAGAGAGAGAGACAAGTCACAAAAGC CCCAAACAAACCAACACATAACAATATCCTCACTGCACGCACGGTTCCGGTTTGTGTACTTTTTCTTTCCTCTTCCTTCT TTCTTTTCTAGATTTGTTTTTGAATTTGCAGTTACTTGTTGTCGACATTCCCATTCTTCAACTCACCAACACAGAGAGAA AGAGAGAGATGGAGAACGACCCACAAAGTGAACAAGTGCTGTCGGTGGAGCTTCCAGCTCCTCCTGCTTGGAAGAAACTG GTATCTTTCTCTCTTCCTTTTTCTCTCATTTTGTATGCAACTCAACATATTTGCAGGTAGTTAGTTTTTTTGTTTTTTTC TCTAATTTTTTTTTTTCACTTTTCTTGTTTTTTGTGTTAATTTATAAATTATTATTATGTTTGTTTCCATGGCTTGGTTT CTTACTTTCCAGTTTCCCTGCCACAATCCTGTTCTCTTTCAGTTTTCTGTTTGTAAAAATTTGCTGTTAATTTTTGTTTC TAGGGTTTTGCTGAAAGGGGTTAATCTTGCAATTGTGGTAGCCTTTGCCTTTTTTGCTTTTTCCAGTAACTTTTACTTTT TCTGGTGGTGCTAGCTAGTGTAGGGTTAATTTAATTAGCATAGCAGTTAGATTTGTTGTTACCAAAATTTGTCTACTTTA GGTTCAGTTGGATTTTTTTGGAAAAAAAAAATCTGTTCTCTGCTTTCATGGTAATTGTTTTGGACAATTTTCCTGAATTT TTTTCCTAGATTTAGGGTTTTCAATGTATTTTGTGGATTCGAAAATTTTGGTGCCGGAATTCATTCCATTTTTGTAATTT TGCTTACTTGTCCTGCTCTGCGTTTAATTTGGTTTACCCTTCTGGATTCTGAATTGCAACCTCCAAGTCCCAGAACTTAC TAACGGGTGTGTTTGATTAACCGTTGAGAGGAATTCTTGGGGTTCCTTTGGGGTTGAACCTAATTTTGAAGGCTTTTGTA ACTGATTTCCAGTATGAAACTGTCATGAAATTTACTGTTTGCTAAGGAAACAGATTAATATATATATATTTTTTGGTTCA GCACTGGTTGGTTAATTTTAGTTCATTTCATGGGCTTATGTTACAGAAAGTCATGAATTTTGCAGCAAAATATTTACAGA CATACATTATTATCTGAGTCATTCTAGACCAGACCATTTTGTGAACTAATGCTTGAAGGTTTAATGATGGTCATGTCCTT CTGGTTTTGTTTTCTATGCTTTTGTACATTTTTAACATAATTGACTCTTGAACCTAATCATTCACAATACTGTTTTGCAC TGTTAAGCTGTACCTATGAAATCCACAAGCCTTCTTATTAGACTCATTGTAATTCTATGCTGTATGGAAATTTCGCTATA ATGCTTTTTAACTTACTCTATGCAGTTCTTCCCTAAGAAAGTAGGAACACCAAGGAAACAAAGTGAGATCACATTCATTG CTCCTACCGGGGAAGAGATCAGTTCCAAGAAGCAATTGGAGCAGTACCTGAAGGCACATCCTGGGAATCCTGCGATATCG GAGTTTGATTGGGGAACCGGTGAGACCCCGAGGCGATCAGCTAGGATTAGTGTGAAGGCCAAATCAACTCCGCCACCAGC AGAGACTGATCCTCCAAAGAAACGATCTCGGAAATCATCATCAGGGTCAAAGAAGGATAACACAGAAACTGAATCTGCTT CAGAGGAAGGTAAGGCAAAGTCTGCTGCTGAAGAAAACACGGCTGACCCGAACGATGCTGATGATAAACCAAAGACTGAT GCAGAGGAAACTAAGCAGAGTAATGTGGAAGGGGACAATGTGACTGCCAAAAAGCCTCAAGGGGAGGAAGAAGCGTCGTT AGCAGAATCAGGGGAGAAACTTGTTGGGGAAGCTTTGAACGATGCTGTGATGACTGAAACCCCCCAAGAGGAGGCACCAG TAGTTGTATCAGAGAAAGAGAATGGTGCAGTTGATAGTAAGCCTGATAATGTGGAAGGGGAAAATGTGACTGCTGAAAAG CCTCAAGAGGAGGAAGATGCATTGTTAGCAGAAGCTGGGGAGAAGTTTGCTGAGGATACTTTTTACGATGCTGTGATGAC TGAAATCCCCCAAGGGGAGGAACCAGTTGTTGAATCAGAGAGAGAAAATGGTGCAGTTGACAGTAACAAGGATAATTCAG GTACTGTGACTCTTGAGGTAAATGGAGGAGCTGAGAAAGAGGAACCAGTAGTTGAATCAGAGAAAGAAAATGGTGCAGTT GACAGTAACCAGGATAATCCAGGTACTGTGACTCTAGTGGAAAATGGAGGAGCTGAGAAAGTGAATCCTACTGTTGAAGA CATCATCAATAACAATGCTAAGAATGAAATCCCAGTAAGTGATGGAAAAATCAACATTCAGGCTGAGGAGCAAGTTCAGA AAGTGGTTGACAATGGGATTTGGAGCTTTGCTCAATGAAGTGTAGGTTATTAATTCCTAGCACCATTAACTTTTTGTGAT GCTATATTCAAATTGCTTTAGATGTTTTGTGAATTACCGGATGACTGTAGTATCATGTTATGGCTAAAGATTTGGATGTA TTTAGGAGATTAATCACGTATTTGTGGTAGATTAGATCATAGTATGCAGTTCTGAATGTAGGTGTTTTGTACAATGTTCT GACTAATGTCCATTTGTGTAACAGGAGTAGGAATTAAAATTTTACTTTGCCCGAATTTCATGACCCATCCTTTACTTGGA AGAAAAAGTAAATGTGGATTTTAAGTTCACTCGTTTGTTTATCTGTAAGTAGATAGGATATATTTTAAAAAATGTTTTCA TAGTCAGCATAGATTGGTAAAGTTAGTCTTATGTAAATGAAGAAAGTGATTATTATGTATTCAGTTTTTAGAATAATGAT GTACTTTCACATTGGAGGTTTTTATTTTTTTCCCATTCAATGGTTGCGTTTTGTTGGCATTGATGATAATTAGATATGCT TACATAATATGTTTATATATTGTATACATTAAATTGTAAATTAAGAAAAGATACAATGAAAGGGGATGAATTTGTATTAA GTTAAATTTTAGTTAGCATCAAATAGTTGTGATTTTTTTTTACATGAGGAACACAAAAACGAAAAAGACATTATCACATT GCATCTCGGCACAACGACACAATTAAGCTAGGTGGAAGCTTCACAATTAAGCTAGGTGGAAGCTTCTAGGTATGTCGATG TGATCCTTCTCGAGGCTTGACGGGCCAACATATCCGTTGTACGATTTTTATCCCTAAGATATGTGAAC
CDS sequence (LotjaGi3g1v0356500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAACGACCCACAAAGTGAACAAGTGCTGTCGGTGGAGCTTCCAGCTCCTCCTGCTTGGAAGAAACTGTTCTTCCC TAAGAAAGTAGGAACACCAAGGAAACAAAGTGAGATCACATTCATTGCTCCTACCGGGGAAGAGATCAGTTCCAAGAAGC AATTGGAGCAGTACCTGAAGGCACATCCTGGGAATCCTGCGATATCGGAGTTTGATTGGGGAACCGGTGAGACCCCGAGG CGATCAGCTAGGATTAGTGTGAAGGCCAAATCAACTCCGCCACCAGCAGAGACTGATCCTCCAAAGAAACGATCTCGGAA ATCATCATCAGGGTCAAAGAAGGATAACACAGAAACTGAATCTGCTTCAGAGGAAGGTAAGGCAAAGTCTGCTGCTGAAG AAAACACGGCTGACCCGAACGATGCTGATGATAAACCAAAGACTGATGCAGAGGAAACTAAGCAGAGTAATGTGGAAGGG GACAATGTGACTGCCAAAAAGCCTCAAGGGGAGGAAGAAGCGTCGTTAGCAGAATCAGGGGAGAAACTTGTTGGGGAAGC TTTGAACGATGCTGTGATGACTGAAACCCCCCAAGAGGAGGCACCAGTAGTTGTATCAGAGAAAGAGAATGGTGCAGTTG ATAGTAAGCCTGATAATGTGGAAGGGGAAAATGTGACTGCTGAAAAGCCTCAAGAGGAGGAAGATGCATTGTTAGCAGAA GCTGGGGAGAAGTTTGCTGAGGATACTTTTTACGATGCTGTGATGACTGAAATCCCCCAAGGGGAGGAACCAGTTGTTGA ATCAGAGAGAGAAAATGGTGCAGTTGACAGTAACAAGGATAATTCAGGTACTGTGACTCTTGAGGTAAATGGAGGAGCTG AGAAAGAGGAACCAGTAGTTGAATCAGAGAAAGAAAATGGTGCAGTTGACAGTAACCAGGATAATCCAGGTACTGTGACT CTAGTGGAAAATGGAGGAGCTGAGAAAGTGAATCCTACTGTTGAAGACATCATCAATAACAATGCTAAGAATGAAATCCC AGTAAGTGATGGAAAAATCAACATTCAGGCTGAGGAGCAAGTTCAGAAAGTGGTTGACAATGGGATTTGGAGCTTTGCTC AATGA
Protein sequence (LotjaGi3g1v0356500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MENDPQSEQVLSVELPAPPAWKKLFFPKKVGTPRKQSEITFIAPTGEEISSKKQLEQYLKAHPGNPAISEFDWGTGETPR RSARISVKAKSTPPPAETDPPKKRSRKSSSGSKKDNTETESASEEGKAKSAAEENTADPNDADDKPKTDAEETKQSNVEG DNVTAKKPQGEEEASLAESGEKLVGEALNDAVMTETPQEEAPVVVSEKENGAVDSKPDNVEGENVTAEKPQEEEDALLAE AGEKFAEDTFYDAVMTEIPQGEEPVVESERENGAVDSNKDNSGTVTLEVNGGAEKEEPVVESEKENGAVDSNQDNPGTVT LVENGGAEKVNPTVEDIINNNAKNEIPVSDGKINIQAEEQVQKVVDNGIWSFAQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 357 | 356 | 4.9E-68 | ||
| ProSiteProfiles | 7 | 78 | 72 | 12.764 | ||
| SUPERFAMILY | 8 | 105 | 98 | 6.54E-22 | ||
| Gene3D | 10 | 78 | 69 | 3.4E-7 | – | |
| Pfam | 14 | 77 | 64 | 7.7E-13 | ||
| MobiDBLite | 61 | 233 | 173 | - | – | |
| MobiDBLite | 97 | 156 | 60 | - | – | |
| MobiDBLite | 165 | 179 | 15 | - | – | |
| MobiDBLite | 211 | 233 | 23 | - | – | |
| MobiDBLite | 261 | 327 | 67 | - | – | |
| MobiDBLite | 294 | 308 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi3g1v0356500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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