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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0356600 |
| Transcript ID | LotjaGi3g1v0356600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | TPR repeat protein; TAIR: AT5G20190.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q5T764|IFT1B_HUMAN Interferon-induced protein with tetratricopeptide repeats 1B; TrEMBL-Plants: tr|K7KZD4|K7KZD4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0356600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:73856813..73859696) extracted from Lotus japonicus Gifu genome v1.2.
AAATAAGGAGAGAGAACATCTTCATCCCCAAACTCTTGTCATGCAACCTTTAGATTCTTTCAAGTTCTATAAAGACCAAC TAGTCTCTTGCATTATATTATTTCATGTCTGACTCCCTTTCACATTTTTCTTCCTATGTTTTTCTTTCCTTTCTTGGCAA TTAAATACTTTTCCTTCACTTTTCATTCCTTAGCTAGCTGGTTTCAACTTGCAACATTTTCTTCTCAGCATCTTATTATA TCTATTGCATTATATAGCTAGTTCTCATATTACACCAACACCTTGATTTTTGCTCATTCTTTTTCTCAATTGTGATAAAG ATGTTACTTCGAAGCTCCTCTGCACCAATTCTGAGTTCTTTGACTGAGCCAGAACACATTCTTCACCTTCCTAGAACAAC ATCAGTTTTAAGTCTAAGCCAAACCTTAGCAGACATAAACCTTCAAAACTCATCATCAAGTTTTAAGAAGAAAAATTGTG TCCCACGTAGTCATGTTCTTAGAAACCAACATAGTAGCACAAAGATCAAAGAGAGAAATGGAGTGAAAGATCCACAGCTA AAAACTAGCATGAAAGCACAATCTTCTATTCAGGAACTGCTTCCAAGCCCTGGATTAGACATGGGAGTCGTGGATCATAA AAAGTATGGTGTTGGGAAGGAAGCTAAGAGGTTACAGACTTCAGTGGTGGGTGGTGGGATGGGAAGAAATGGTGGTTGTG ATGGTAGCGGAGGAGGGTGGGATTTTTCTGAAGGAAGTAATCATGGTAGAGACAAGACAGATGCTTATTACCAAAACATG ATTGAAGCAAACCCTGATGATGCTCTTTTGCTAGGAAATTATGCAAAGTTTTTGAAAGAGGTAATCAAATTCGTTTCACT AGCTAATAATTCAGCTTGATCATGCATGTTTTCTTTCTTTGAGTATTTAAATTTAAAGAAAAAAAATTCAATCCAATTGG CAAGATTAATCAGTTATCAAGACTAGCTAGGTGGTGTATGCATTGTGCAATGAAAGCTATATGCTTCATCTTGATTAATA TATCTATCATGCATCAACTCATGGAATATTGGAATCTTATTTTTTTTATGTTGATATAGGTTCGTAGAGACTATACTAAA GCAGAAGAATATCTTGAAAGGGCGATTTTGGCTAGTCCTGGTGATGGTCATACTCTGTCCCTGTATGCTGATTTAATATG GCAAACAGAAAAGAATGCTGATCGAGCTGAACAATACTTTAATCAAGCTGTTCAAAGTGCCCCAGAAGATAGGTAAGATC GATATATAACAATAATTTATCATTCGTTATGCTTTTTCCTTCTTTCTAGATATCTTCATATTCATAATAGCATGGATCAA TTTATTTTCTCTGAGAGTCAATTCTGGCGCTCAGAAATTATTGTGCTTAGAATTGATTTTGGTTGTAGAATGATAGAATC AATTAATGGAGATTTCCAAACGTACTAGAAGTGTTTTACGAGCTAAACTATGTTATAATCTCGAGTTAATGTAATCAAAG TTAGTCTATAGAAGAAGGAAATACCCCTGCAATTCCTAAATGTGTAAAATTGCCGGACAAGTTAGTTCCTACGGTGTCAT AAAACGTCAATCAAGTTACTCCCTAAAGTTACTCTTTTTAGGGACTGATTTGACGACATTTGACACAATCAAAGACTTTC AAAGTTATTTTCTTCTTCTAGGGACTAACTTGTTCGACACCTTATCTTTCAAGGACTAATTAAGTTGGCGATTCACTATG TAATCTCTTGACGACATGGTATCCAGGAAAACTCTAGAGGCATTTTGCTCTATTTTGCTTTTTCTGTTTCTCGAATGAAA AGGATTCTGTGCTGATTTCTGTTGTTGATGCAACTCATGTGGCAGTTATGTCCTAGCTTCATATGCTAATTTCCTGTGGG ACGCTGAAGATGAAGAAGATAAAGACAGTCAAAATGAATTGGATCACAGCCGTAATGCATATCCAAATCCAACCGATCTC TTTCAAGAAAATAACCATCACCCTCATCTCACTGCAGCCTCATAAGCCTTACCTATCAGTCTTGGAAGAGAAGGTTATGG GTAGTTTGCATGACTAATGAAGCATTTAGTCTTAAACAATCACACATGCACCTTTTTTAGCTTTTGAAGTGGCTGATGGG AAGGACTTGTTTAATGGAGATGTCTGTCTATTGTAAATAGCTTATAGCATGTTTAAATCGGCTTATTTTTCTTAAAATCA ATTCTGGCACTGGAGTATAATAATAGAAAGCCGCTTTTAGTGCCTCATGGGCTAGCTAGTGAGTAGTAAGGCTTCCAATG ATTTATCTTTTGAGAGTATTTAGTTTTGCAGATGCTATGGTGTAACATATTCCTTTCATTGTTTATATTGTGTCTTCAAT TCGATTTGATTTACCAAAAATGGAGTATTCACCTCATGGTGAACAGTCCACATGGTTATCCCATATTTTGAGGAAAAAAA TGTTGAGAAGGGACCATCAATATTATGATGCTAGCATTAATACTTAAGGGTGTATTATATTAGTGTGATCAAACTAAATG CAATATGAAAATACTTTATACTGAAGTGCGTAATCTGTAATATCTAAACATAATCTTGGTGGTATAATATTTATAGTAGT GCGTGTTTTATTGTAAGTTAATTAAGTACACAATTTGATACACTAAGGACAAAAGTTACATGTTGCTCCATCGTTCCTTA TTTCAATAATCAAATCTGAGGCATATTGTTTTTTTTTTCTTTTTCTGATAAGCTCTGAGGCATATTATGAATTGTTTTTT AATAAAAATATTTTTATTTAATTGAGTTTTCTCTCTTTCTACTCTCCCAAGTATTAATGATATATGCACATAAATAAACA AAAG
CDS sequence (LotjaGi3g1v0356600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTACTTCGAAGCTCCTCTGCACCAATTCTGAGTTCTTTGACTGAGCCAGAACACATTCTTCACCTTCCTAGAACAAC ATCAGTTTTAAGTCTAAGCCAAACCTTAGCAGACATAAACCTTCAAAACTCATCATCAAGTTTTAAGAAGAAAAATTGTG TCCCACGTAGTCATGTTCTTAGAAACCAACATAGTAGCACAAAGATCAAAGAGAGAAATGGAGTGAAAGATCCACAGCTA AAAACTAGCATGAAAGCACAATCTTCTATTCAGGAACTGCTTCCAAGCCCTGGATTAGACATGGGAGTCGTGGATCATAA AAAGTATGGTGTTGGGAAGGAAGCTAAGAGGTTACAGACTTCAGTGGTGGGTGGTGGGATGGGAAGAAATGGTGGTTGTG ATGGTAGCGGAGGAGGGTGGGATTTTTCTGAAGGAAGTAATCATGGTAGAGACAAGACAGATGCTTATTACCAAAACATG ATTGAAGCAAACCCTGATGATGCTCTTTTGCTAGGAAATTATGCAAAGTTTTTGAAAGAGGTTCGTAGAGACTATACTAA AGCAGAAGAATATCTTGAAAGGGCGATTTTGGCTAGTCCTGGTGATGGTCATACTCTGTCCCTGTATGCTGATTTAATAT GGCAAACAGAAAAGAATGCTGATCGAGCTGAACAATACTTTAATCAAGCTGTTCAAAGTGCCCCAGAAGATAGTTATGTC CTAGCTTCATATGCTAATTTCCTGTGGGACGCTGAAGATGAAGAAGATAAAGACAGTCAAAATGAATTGGATCACAGCCG TAATGCATATCCAAATCCAACCGATCTCTTTCAAGAAAATAACCATCACCCTCATCTCACTGCAGCCTCATAA
Protein sequence (LotjaGi3g1v0356600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLLRSSSAPILSSLTEPEHILHLPRTTSVLSLSQTLADINLQNSSSSFKKKNCVPRSHVLRNQHSSTKIKERNGVKDPQL KTSMKAQSSIQELLPSPGLDMGVVDHKKYGVGKEAKRLQTSVVGGGMGRNGGCDGSGGGWDFSEGSNHGRDKTDAYYQNM IEANPDDALLLGNYAKFLKEVRRDYTKAEEYLERAILASPGDGHTLSLYADLIWQTEKNADRAEQYFNQAVQSAPEDSYV LASYANFLWDAEDEEDKDSQNELDHSRNAYPNPTDLFQENNHHPHLTAAS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 282 | 282 | 3.4E-82 | – | |
| PANTHER | 1 | 282 | 282 | 3.4E-82 | – | |
| Gene3D | 141 | 271 | 131 | 5.9E-15 | ||
| SUPERFAMILY | 155 | 255 | 101 | 1.04E-11 | ||
| ProSiteProfiles | 156 | 237 | 82 | 11.72 | ||
| Pfam | 183 | 244 | 62 | 1.0E-5 | – | |
| MobiDBLite | 252 | 290 | 39 | - | – | |
| MobiDBLite | 265 | 290 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0356600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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