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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0358600 |
| Transcript ID | LotjaGi3g1v0358600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F box protein; TAIR: AT1G30950.1 F-box family protein; Swiss-Prot: sp|Q39090|UFO_ARATH Protein UNUSUAL FLORAL ORGANS; TrEMBL-Plants: tr|A0A0B2SU90|A0A0B2SU90_GLYSO F-box only protein 6; Found in the gene: LotjaGi3g1v0358600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:74051216..74053156) extracted from Lotus japonicus Gifu genome v1.2.
CACTTTTTTTCTATCACATAATTTATCACATCTCTTACCTTTCGCTAATCTAATTGTGTTTGGAGTGGCAAATTAGTCAA ATATTTAACATGCAACTACATTCACATACATATGCCCAAATCCAGACCTTGCACAAGTAGTAAAGTCCAATTTAATTATT GTTAAAATTTGTTTATACCGTTGTGGTAATAATCTACTTGTCGATAAAATACACAAATTCTTGGCAAGTAGCAAGACACC ATCAACCTCACATAGCCACAGTCCCTGAAATCTTCATCATTTCATTTCTATGTGGAGCAACCTGCCATTTGATCTGTTAT CCTTTATCTTCTCTTTTCTCCCCCCAGACTCCATAGCCAGAGCAAGATCAGCTTGCAGGAACTGGCACACATGTCCCAAT CCTTATCCTTCCACCCCAACAAGGTTCCCACCATGGTTCTTGGCCTTCCCAATCCGCTACCACAAACCATGCTGCTATGC TCACAACCCTGTCACAGAAAACTGGCACGAACTCACTCTGGATTTCTTGCCAATACCAACAACTTCAATCCGACCAGTTT CACCAATCGGAAGCCTCCTGCTGTTAAGAGTCACCAGTTTCAACTCCACAACGTTCCAACTGGGTCTCTGCAACCCATTC ACAAGGCAATTCAAGCACCTTCCTCAGTTGCATATTTCAAGGACTAATCCAGCTTCAGGGGTCACTGTTTTAGACCACGG TTCTCAATTAGAATTTCCTCACTTCAGAGTCTACGTGGCCGGAGGCATGTCGGAGGCAGCAAGAGGCGGCGGCGCCTCCT ACGAACCCACTGTGGAAATGTACGACTCGGAGGTTGGCGTGTGGGAGGTAGTTGGGTCTGTTCCGGTGGAGTTTGCGGTT AGGCTTACCGTTTGGACGCCGAATGAGAATGTTTGTGTGAAGGGGACATTGTATTGGATAACATCGGCCAGGGCCTACAG TGTGATGGGGTTTGATGTTGGTGCGAACACGTGGAGGGAGCTGGGTGTGCCTATGGCGGAGAAGCTAGAATTTGCCACGT TGGTTAAGCGGGACGGGGCAATGGCGTTGGTTGGTGGAGTGTGTGGTGGGGATGTTTTGGTTTGGGAGATGAGTGAAGGG GGTGAATGGTGTTTGGTGGATGAGGTGCCTGGGGAGTTGAGGTTGAGATTGTTGGCAGAGAAGAGGAATTGGGAGAGTGT TAAGTGTGTAGGAAATGGGGATGCTATTTGTTTGTACAAGGATCTTGGATTTGGTATGGTGATTTGTAAGAAAGTTGGAG ATGTGGGTAGATGGGAATGGGTTTGGGTTGATGGGTGGGGTTACATCAAGGGGAAACAAGTGCGCAATTGCCCAATAAGG GGAGCACTTCTTCACCCAACTCTTGCTTATAGTGCGTTAAACTAATTAACATGAATGTGTGTGTCCTTAAAAATAGTTTG TGTCAGTGCTCTCTATTATACAATTGAGACACAACAATTTGTCAACCACATGCTCTGATTCCTTTGCCAATTTCTCCAAT TTTATCACCACCATGCAACTCTTCAGTTGTGTGGCTTGAATGGTTCTTTCCCTAAAGACATCTTCAACATACAAACACTA GAGGTCCTTGATATATCAGATATTCAGATCACAACCACTTCTTTTTTGTTTTTAATTCACTAGGGTCTGTTAGCAGCATA TAATGCAACTCATATAATGTGATCAGGTGGCCATTTATTGATACTGTGTCGTGTGTAATTAGTAATCAGTGCTTGCTATA ATACCTTAAGCCAGATGAAGGTGTGATACCTTAAATGATATAAACTCATAGAAAACATAAAATTTAAACTTAGAGAAAGA GGATGAAGGAAGATTTGGAGGTTCAATATAGGTGGAACATGAAGGAAGAGGATCCTGACATGAAAGGAATTTAGATGATC TCTCAGAGTTGCCAGTTGAAC
CDS sequence (LotjaGi3g1v0358600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGAGCAACCTGCCATTTGATCTGTTATCCTTTATCTTCTCTTTTCTCCCCCCAGACTCCATAGCCAGAGCAAGATC AGCTTGCAGGAACTGGCACACATGTCCCAATCCTTATCCTTCCACCCCAACAAGGTTCCCACCATGGTTCTTGGCCTTCC CAATCCGCTACCACAAACCATGCTGCTATGCTCACAACCCTGTCACAGAAAACTGGCACGAACTCACTCTGGATTTCTTG CCAATACCAACAACTTCAATCCGACCAGTTTCACCAATCGGAAGCCTCCTGCTGTTAAGAGTCACCAGTTTCAACTCCAC AACGTTCCAACTGGGTCTCTGCAACCCATTCACAAGGCAATTCAAGCACCTTCCTCAGTTGCATATTTCAAGGACTAATC CAGCTTCAGGGGTCACTGTTTTAGACCACGGTTCTCAATTAGAATTTCCTCACTTCAGAGTCTACGTGGCCGGAGGCATG TCGGAGGCAGCAAGAGGCGGCGGCGCCTCCTACGAACCCACTGTGGAAATGTACGACTCGGAGGTTGGCGTGTGGGAGGT AGTTGGGTCTGTTCCGGTGGAGTTTGCGGTTAGGCTTACCGTTTGGACGCCGAATGAGAATGTTTGTGTGAAGGGGACAT TGTATTGGATAACATCGGCCAGGGCCTACAGTGTGATGGGGTTTGATGTTGGTGCGAACACGTGGAGGGAGCTGGGTGTG CCTATGGCGGAGAAGCTAGAATTTGCCACGTTGGTTAAGCGGGACGGGGCAATGGCGTTGGTTGGTGGAGTGTGTGGTGG GGATGTTTTGGTTTGGGAGATGAGTGAAGGGGGTGAATGGTGTTTGGTGGATGAGGTGCCTGGGGAGTTGAGGTTGAGAT TGTTGGCAGAGAAGAGGAATTGGGAGAGTGTTAAGTGTGTAGGAAATGGGGATGCTATTTGTTTGTACAAGGATCTTGGA TTTGGTATGGTGATTTGTAAGAAAGTTGGAGATGTGGGTAGATGGGAATGGGTTTGGGTTGATGGGTGGGGTTACATCAA GGGGAAACAAGTGCGCAATTGCCCAATAAGGGGAGCACTTCTTCACCCAACTCTTGCTTATAGTGCGTTAAACTAA
Protein sequence (LotjaGi3g1v0358600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWSNLPFDLLSFIFSFLPPDSIARARSACRNWHTCPNPYPSTPTRFPPWFLAFPIRYHKPCCYAHNPVTENWHELTLDFL PIPTTSIRPVSPIGSLLLLRVTSFNSTTFQLGLCNPFTRQFKHLPQLHISRTNPASGVTVLDHGSQLEFPHFRVYVAGGM SEAARGGGASYEPTVEMYDSEVGVWEVVGSVPVEFAVRLTVWTPNENVCVKGTLYWITSARAYSVMGFDVGANTWRELGV PMAEKLEFATLVKRDGAMALVGGVCGGDVLVWEMSEGGEWCLVDEVPGELRLRLLAEKRNWESVKCVGNGDAICLYKDLG FGMVICKKVGDVGRWEWVWVDGWGYIKGKQVRNCPIRGALLHPTLAYSALN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 1 | 74 | 74 | 1.96E-10 | ||
| Phobius | 1 | 25 | 25 | - | – | |
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| PANTHER | 1 | 369 | 369 | 9.5E-154 | – | |
| Phobius | 1 | 8 | 8 | - | – | |
| PANTHER | 1 | 369 | 369 | 9.5E-154 | – | |
| ProSiteProfiles | 1 | 34 | 34 | 8.57 | ||
| Pfam | 2 | 35 | 34 | 9.6E-7 | ||
| Gene3D | 2 | 38 | 37 | 2.6E-8 | – | |
| Phobius | 9 | 17 | 9 | - | – | |
| Phobius | 18 | 25 | 8 | - | – | |
| Phobius | 26 | 371 | 346 | - | – | |
| Gene3D | 55 | 287 | 233 | 7.3E-12 | ||
| SUPERFAMILY | 59 | 289 | 231 | 3.66E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0358600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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