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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0359400 |
| Transcript ID | LotjaGi3g1v0359400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cytochrome c oxidase subunit 5B, mitochondrial; TAIR: AT1G80230.1 Rubredoxin-like superfamily protein; Swiss-Prot: sp|Q9SSB8|CX5B2_ARATH Cytochrome c oxidase subunit 5b-2, mitochondrial; TrEMBL-Plants: tr|I3SVI7|I3SVI7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0359400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:74170428..74174569) extracted from Lotus japonicus Gifu genome v1.2.
CACCCACCGATTGTTCCAAACACGAAAAAAAGGAAAAGAAAAATGTGGACCATTTCCATTCTGTCTCTCTCCACCACTCT GCTCAGCTCACAACGTTGTGATTTCTCAAGAGTCAAGATTCACACAGCGAAAAGGTGTGACCTGAGAACATCACCATGTG GCGGAGGCTTCTCTCTTCTCACCTCAAAACCCTAGCCACTTGTTCTCCCCAATCTGTTTCCACCGTCGCTGCTCTTAATT GCTCCTCCGTTTCACTCCTCCGTCACTTCTCTGGTATTTTCTCTCTATTGCACATGCCATTTCTTTACTTATGAGCTGAT TAATTGATTTTCGATGTGCTTTCTTTTTTCAACTACCGCAGATACTACTTCGATAAAAAAGAAGGTCGAAGATGTAATGC CTATCGCTACTGGTCACGAGCGCGAGGAGCTTCAAGCTAACCTTGAGGTCAAGTTTTGTAATTACCTTATTTTTTGTATT TGAAGGGTGATTCTCATTTTATTTTATTTTTGGATTTCTGTTTCTTTTGGTTAGGGAAGGGATATCCTTGAAATAAATCA TCCTGTTGGGCCTTTTGGCACAAAGGTCAGTGTAATAGCTTATTTTTCTAAATTGTATCTGTACCTATGCCTAATTTTTC TTTTGTAAAATGAGAACTATATGAATGACCCAGCGATGTAGCATTGTATGTTAGAACTCATTTATTTTTGGTTGAATGAG TGATGTTCTCTGTTTTCGTGCATCTGTGTTAGTTTTTATATTTCAAGCGTGGAGAACTCTAATATGTTATTTCCTGCCTT ATGACCTGGTACATGTGATTCTCTCTGCAAAACTAGAGGTTTTTTTGTGAATGCTGAAATTTGAAAGTTACTTACTGGAA AATGTATAGATGTTGGTATGAGTCTTTTTAAAAGCACAATAGTTTATAGTAAAACACAGTTTATCTGCTGCTTAAGGTGC AAAACTATAGAATGATAATGCTTTGGTCCTTACCATTAAAGGATTGCTTCTGTATATTTTTCACTTATCTGGACTTTAGT CCCTGTAGTTTCTATCCGTTAAGGTATTAGTCCCTATTTTCCATCAAGTATTGACCCATGTAGTTTTCATATTGAATATT GAGGTAATTGTACTTGATATAGTTTCCACTCATGTGGATGTCAATCAAGGTTCCCTATTTTGACTATTACCATTAAGAAA TTCTCCCTGTAATTTTCATGTATTGAGTTTTTTTATCCCTATTCTCAATTAAGAATTGACCCCTGAATTTTTCACATATC AAGATATTGGCATCCGAGTGACAAAAAGCCTAATAAATGGAATTTCATTTGCCGTAGTTTTTAAATATTTGTCAAGGATC AAGATGTTCAAACATTTCAGTATCATTCTAAAGTACAACATGCTTCCTAACATATTTATTAATGTTTTATTATATTTTTC ATTTTTACTTGTAGCAGTTACAAGTTGTGAAAGGAATGGTGCATATAGTTCATGATTTATATTTTAAGCCCCACGATTCT CTGCAAATTCAGTTTGCTAAGTTTGGACAAATATTTAGTAATTTATCCAGTTGCTGATTTGTTTGCTTAAATTTTATAGA ATCTAAGTATCTACAGGATGGACTGAAAAGTAAAGGAAGGGATGTCAATAGATGGATATATATTTACATGAGTTTTGGAT TTAGGTACTTTAACATTGTGATCCTCTTTAGAAGCAATTGACAATCAACATGAAGATATCCTCACAAAATGTAACAAATT TTGTTGATGGTGGTGGCTCATTGTTGGTCTATGTCTAATTGTCATGCTTGATTATCTCACTATGCTTGGTTGGGAAAGAT ATAGTCAGCATGAGGCTGGAAAATCAATCCAGGGGCCTCCATTTCTCATATCAAGGAATATGATGACTTTATGTCATTTT ATATCATTGGTTATTGTCTTAGCTTTCTTGTCCTTTACCATATCAAAAAGGCATACTTAAGCTTCCTGGCATTCCATTTT CATTTTTCATTTGAGCAAAAGAACTATTTGTTTACCTTAGTATTCATGTTTCTTTCGCTCTTTCCAAATGGTTCTTTCAG ATTGCTTGCCATAATGCTAACAGATAATGGTTTTGAATATGTTTCATCTATCTACACTCATTTTTGTTTTGGTTCGTAGG AAGCACCTGCTGTTGTTAAATCTTACTATGATAAGAGGATAGTTGGATGCCCAGGTGGTGAAGGCGGTGAGTGTCAGAGT ATTGCTTGCTTGTTTTAATATATTCTTGCACGTGAACTTCTTCCAAAGATGATGAAAAAGGCTAGAATTTCAGTTCTGGT GTTGAGGAGGTGGACTACTTGTTTTGATTGCAGAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGCCT CATGAATGTCCTGTGTGCGCACAGTATTTTGTGGTAAGTTGATTATTGAATTTAGTTTATCTTTTACTTGGACAGTATTT TGTGACAAGCAAAGAATCATTTAGTATATCTTGGTCTGACTTAAAGGCTTGGGGTTGAATTCCTGGATATGTATGATAGA TTGAAAATTGCTTGTCCAGGACCATTGCTTGTCATGGACTGCACAGAATAGGGCTGCTCCTTTAAAACATGTTGAGAGGC TTTTTAGTTCCTTTAAATATTTACACAAACCGAATTCCTTGAGTAGTCTTAAGTATGATTAGAGGGTAATGTTGCATGGT TCTAGTCATCTAGTGTTCTTAGCTTATTGCTGTGGGGTAATTCTTGTTTTAGCCAAGATACATGCTAAGTTTGTTAATGT GAATGTGAGGAGCTTTTAATCTTCACAAAACATATTTTTTAACCATTGTTTTACAATTTACAGTGATTGCCATGCAGAAT CCAGATATTTTTAAGTTTGGGCTTACTTGTGTTGTGACCTCATGACAGCAAATTAAAAGTCAAAATCAAAAGTTCTTAAT CACAATTTTAGTAGCTGTAGGTTATCTTTGATGAAATGTTTTATCTTCTAACTGCTCAATAGGGCACTGAATCATCAATT AACATCCACTAAATAGTTTAAAATTCTAAAGAGTTTGAATTATATCATCTTCAGCTAATGTCATCAATGCTTTAATTGGT ATCTACAGAAGAAGAACTTTATAGCAAGTTTTATTAATATAGCTGCAAATGGATAAGTGGAGAGTATCTAACCCAAGTAG TGCAGTGCATAGGTTAAACTGTTGTCTTTTGCCCAACTTTTTCATGAATGGACAGTCAGAACAAACTTCAATCAATTTTA CACCTATATTATATAGAACTTTAACGGATATTAACCAGATGAGTATTTAAAATGATACTAATTACTCTATCTTTTTTTTC CCAAACAGCTTGAGGTGGTGGGACCTGGTGGACCACCTGATGGACATGGTGATGATCATCATCATTGATTTCATCCTTCA ATTCCCCTTGGAATGAATTTGGGAAAGATGGAGAGACAATGTGTAGCATACACTGAGGCCTTTCAAAATCCTGGGGCCTA TGTTTGGTTTCAATTTGTGTATACCCTCTTTTGTTGTTGCAATATTTGACTTAGAAAGTTTCTACGATTATTTGGACACT GCATGCTCATTTGCTTGAACTTTCGGTTCTGTTAGATTGTGTTTTCTGCTTCGCGAAATAATTGATAGAGCTTTTTACTT CAGGATTCTTTAACTCTTTTTGAATTTTCATGACCTTAAGCGATTTATAGCGGGCCCAAACCTCAAATCAGATTAAGATT ATATTTTGAAAGGCAGTGGGGGGCTGACAAAATGGAATGGCAAAAGTAATGCCAATTTGTTTGGATTTAATTTGAAAGGA TGGATTGAAGGATGTAGCAACGCTCGTCTTCTTGGGTTCTAGTCACGTTGAACGTAACTCTAGCGGAGGGGTAATGCCAC TTTCGCGTTTTTTGTACGTTGATGTTGGTCTAAACATATACTGAAGAACGGAGCAGACCCTATTGAGGCCAGAATGACAA GTATTAGGTATATTGAGGCCAGAATGACAAGTATTAGGTATATTAAATTTTTGTCATCGGCTCATTATATATGGAAGAAA CAACAATTGAGAGATAAAAATGTCTTTTAATGTAGAAATGAATTTCTCTATCATTATGCAAG
CDS sequence (LotjaGi3g1v0359400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGCGGAGGCTTCTCTCTTCTCACCTCAAAACCCTAGCCACTTGTTCTCCCCAATCTGTTTCCACCGTCGCTGCTCT TAATTGCTCCTCCGTTTCACTCCTCCGTCACTTCTCTGATACTACTTCGATAAAAAAGAAGGTCGAAGATGTAATGCCTA TCGCTACTGGTCACGAGCGCGAGGAGCTTCAAGCTAACCTTGAGGGAAGGGATATCCTTGAAATAAATCATCCTGTTGGG CCTTTTGGCACAAAGGAAGCACCTGCTGTTGTTAAATCTTACTATGATAAGAGGATAGTTGGATGCCCAGGTGGTGAAGG CGAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGCCTCATGAATGTCCTGTGTGCGCACAGTATTTTG TGCTTGAGGTGGTGGGACCTGGTGGACCACCTGATGGACATGGTGATGATCATCATCATTGA
Protein sequence (LotjaGi3g1v0359400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWRRLLSSHLKTLATCSPQSVSTVAALNCSSVSLLRHFSDTTSIKKKVEDVMPIATGHEREELQANLEGRDILEINHPVG PFGTKEAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCAQYFVLEVVGPGGPPDGHGDDHHH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 4 | 4 | - | – | |
| PANTHER | 1 | 153 | 153 | 2.8E-76 | ||
| SignalP_GRAM_POSITIVE | 1 | 25 | 25 | - | – | |
| PANTHER | 1 | 153 | 153 | 2.8E-76 | – | |
| Phobius | 1 | 26 | 26 | - | – | |
| Phobius | 5 | 16 | 12 | - | – | |
| Phobius | 17 | 26 | 10 | - | – | |
| Phobius | 27 | 153 | 127 | - | – | |
| ProSiteProfiles | 43 | 142 | 100 | 22.136 | ||
| SUPERFAMILY | 44 | 141 | 98 | 4.0E-32 | – | |
| Gene3D | 44 | 138 | 95 | 9.0E-32 | ||
| CDD | 45 | 138 | 94 | 1.77709E-41 | ||
| Pfam | 54 | 141 | 88 | 3.0E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Cytochrome-c oxidase activity | Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O. | ||
| Cellular component | Mitochondrial envelope | The double lipid bilayer enclosing the mitochondrion and separating its contents from the cell cytoplasm; includes the intermembrane space. |
Expression pattern of LotjaGi3g1v0359400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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