Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0359500 |
| Transcript ID | LotjaGi3g1v0359500.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cryptochrome; TAIR: AT3G15620.1 DNA photolyase family protein; Swiss-Prot: sp|O48652|UVR3_ARATH (6-4)DNA photolyase; TrEMBL-Plants: tr|A0A0S3T063|A0A0S3T063_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0359500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:74175339..74179776) extracted from Lotus japonicus Gifu genome v1.2.
TTTCTCTCCTTTTTATCTACAAAATCACTTATCACATATTCAATTTTTCTTTTCTTTCTTCCAATCTCTCTCTTCTCTAT CTCTTCACACCTAAAAATGAGGTGTGAAGAAATGATTATTATATATAAATGTTGATAAAAAAAAGGACTTTAAAGAGAGA AAATTAGCGCCCTGAACCCTGCGTGGCACAAAACCCACTACGTGGCACCTCAGCAACCGTTACATTTCCCCCCCAACCCA ACCCACTCTACACTACGCCGTGGGCGCAAACCAAAATTACGAATCGCACTCTGCACCATCTAGCCCAACAAAATACAACT CCCAGCGCACGTTAGCAAAGAGCACCTCGAATTCCATTCCAGAACGAAAACATTAAGGCGCGAACCAAAACAGTTTATTT CAAATCCAATCCCATGCGGTTGTTTCCTCCGCGCGCCTCCTCCATCATGACAACTCCAACCGCATCCGGCTCGGGTTCCG TCGTCTGGTTCCGGAAAGGTCTTCGGATCCACGACAACCCTGCTCTCGAGTTCGCTTCCCGAGGAGCTTCAAATCTCTAC CCTGTCTTCGTCATCGACCCGCATTACATGAAACCCGACCCGTACGCTTCCTCACCCGGATCCTCCCGCGCCGGTCTCAA CCGCATCAATTTCTTGCTCCAGAGCCTTCGCGACCTTGATCTTAACCTGAAGAAACTCGGTTCAAGACTCTTGATTCTTA AGGGTGACCCTGCCGAAGTTCTCATTCAATGCTTGAAACAGGTATTTCCCAAAAAAAATTTACAATGTCACTGTCACCAT CAACGTTTTTGTCAACCGACCAATTATCCCAAAAGCTTAAGCAGATAGGTAAGGGTCACATGGTTTTAATTATTATATTC TAATACGCCCGCTCACGCAAGAGTTATTTGGGCTTGAAGCGTGGATAAATGCACAGACCCCGCCTACGTGTGTTTAAATT CCACTTTTTAATTTGAAAGTGAGGAGAGCAAAGATCTAACTCTAGACCGCTAAGTCATAGAGACTCTGATACGATATCAA TCAAGCAACCAATTATCTCGAATGGTTTTATATTACATTGTAACAGTTTTTGGCTTGTTTTGTTCTACCCAAATTGTTTG GAAATTTTCAATTTTTTTTAAATTTCGTTTTTTTTATTCTGTTTTTGGATAGAGACAAAACTTAGGGTAGTTAATTCTGT TAGTTCTTTTGGTTGATGCAGTGGAATGTCAAGAAGTTATGCTTTGAGTATGACACTGAACCATATTATCAGGCTCTGGA TATTAAAGTTAAGGTAATGTTTATTTGAGAGTTCAAGGAATGTGTTAGTCATTTGTTATTGTTTTGGACCTATGGTTATG TGATGTGGACATGAACATGTGACTTTGATAATAACTTGAAGGCATTCTTTGTTTTGTTTCGACAGAGCTTTGCCGTTGCG GCAGGAATTGAAGTTTTCTCTCCTGTAAGTCACACACTCTTCAATCCAATGGACATTATACAGAAGGTGAGTTTGAAGCT TGAACAAATTGAAATTGTCTTCAATTTAACTATTGATTTAAGTCATTTTTACTAGGCAAAATGAATAGTTCCTTCCCCCA ACTTTTCTACCTATTATCTATGTGCTGCTGAACTTTGAATCCTAGGTCATCTATTGTTTATTGCTTTTGTTCTGATGTTG TTGACTCATGTTCGATTTGCCTGTGTTCTTTGCGAATGCTGAAAAAGAATGGAGGGAAGCCGCCGCTTAGTTATCAATCA TTTGTCAAGCTTGCTGGGGATCCGCCTTCCCCTCTTTTGACCGAGCTATCTTCACTTCCTCCAGTAGGCCATCTTGGAGG CTGTGATATTTTTGAAGTTCCAACAGTCGAAGACCTTGGATATGAAGATGCTAAACAGGTGGGCATGTTATATTTTTAGA TTATCCCTGTTAATTAGCATCTTATGAGAGATGTTATATTCAGGATGAGTTTTCTCCTTTCAAAGGTGGTGAATCAGAAG CATTGAAGAGGTTGGAAGAATGCATGAAAGACAAGGTACTTCCATGTCACGATGCAAGTTCATCAGTATTCAATATAAAT TTGATGTTTCTTGCTGATAGTTCCACTGCTTGTAATTGGTAATGTATCATGCTGTTATAATAGTCATTCTGCTTCATGCC TTAGTTTCTTATTTTTATGATTTTAGAAGTGGGTGGCAAACTTTGAGAAGCCAAAGGGCAATCCAGCTGCATTCCTTAGG CCCGCAACAACTATTTTATCACCTTACTTGAAAGTAAGTCAAAACCTATTACATCTGTACTGTTTGAAAGATCTATTTTC CTTGATTGAACTACTTTCTACAATCGAACCATATCTTTTCTATATTTATTGCTTCTTATTAATCTCCTCCGCAGTTTGGT TGTCTCTCTTCCAGATATTTCTACCATTGCATTCAAGATGCATATAAAAGTGTGTCAAAGCATACATCTCCACCTGTTTC TCTTCTAGGACAGGTCATGTTATCTCCAGAAATTAGTATGGTATTGTTTTTCAAATTCTACTTTTAGGAAACTGAATGAA GCTGTTATCTTGGGGACATGTGCAGTTGTTATGGCGAGACTTCTTTTACACAGCAGCTTTTGGGACTCCAAATTTTGATA GGATGAGAGGCAACAGGATTTGCAAGCAGGTGGGATAATAATGCTTGCTAATGAATATTATTTACCAATTTTAAGTTTGA TTCAAAGAAGAGATAACAAAGGTTAAGGAAGAAATAGATATGTTGAGGTGTGTATTCAGCTTACACTAATTATTGACTAG AATTGTACGTTAACACATGAAATACTTCTGCTTTTAAACACTAAATATCACTAGCTAGCTTATTATTTTTATGCTTCAAG GACTCTTATTTCTGCTATACTTCTATGTCCTTATATCCTGATTATTATTGATGTGTTGAGTATTTGACATTTATCTAATA CTATGCGGTTGTTCTCATATTAATACTCCTTTGTTAAAAGCAAATGTATGCTTAATTATTATCTGCTTGAAATTTATTTT TGCAGATTCCTTGGAAGGATGATGATAAATTGTTGGAGGCTTGGAGGGAGGCTAGGACAGGGTTTCCTTGGATTGATGCT ATCATGGTCCAGGTTTGGGTTTTAACATCCTTTTCTAAATAGAACTGATGAACAATAGGGTTATTACTTTGAAGTTGTGT AGCTAAAATCCAGTCCACGATGATACTTTTATCAGCCTTCTACTCAGGAAGTACATTTGACTTTGTCTTTTGTTGTTGTA GCTACGTCAATGGGGTTGGATGCATCATTTGGCACGACATTCTGTTGCATGTTTTCTCACGCGAGGTGATCTGGTATATT ACTTCTATACTCCCAAAGCATACTGAAATTCTTATAATTTGTTATTATATACTAATGTTTTTCAGTTTATGCTGACAGTT TGTTCATTGGGAAAAAGGACGTGATGTCTTTGAGAGGCTTCTGATTGATTCAGATTGGGCGATTAATAACGGAAACTGGA TGTGGCTCTCATGTTCATCTTTCTTTTATCAGGTATGAAGTATACTGCATTACTAGTTTTGAATTTTTAGTGGAAATTGA CTAAATTTTATGTTCTCTTGAGTTTAAATGCTGAAGTCTCCACTGATATTTTCATCATGTATTGTCTATCATGATCAGTA TAATCGGATTTATTCCCCAATCACATTTGGGAAGAAGTATGACCCCAATGGGGATTATATTAGGCATTTTCTCCCAGTCT TAAAAGGTACTTTTAAGTTTCCTCAATTCCACCATGTCCTATCATCTAGTAAGCTTTCAATAGATAAGGTGCTAGAACTT AAAATGGAATGTCTCATAGCAGATATGCCCAAACAGTACATTTATGAACCTTGGACTGCTCCTATAAGCATCCAGACCAA AGCAAATTGCATAATTGGCAAAGACTACCCAATGCCAGGTGAGTTATCTCATGCCTGTTTAATTGGATTTCAACTGTGGA TCATGCATAACATGTGGTATTTCATATTAAGTTATTAACCCTGCTTATGCTATGTGTGTTGTGTTTCAGTTGTTTCTCAT GATTTAGCAAATAAAGAGTGTCGAAGGAAAATGGGGGAGGCATATGCATTGAATAGAAAATTGAATGGTTTGGTTAGTGA AGATGAGCTGAAACACTTGAGAAGGAAATTAGATGCAGGTGAAGAGCAAGAGGCTAAAGCTAAAAGATCTAGGCAACAGC TGATTGGCTGACTGAAAAATTTAGTTTTTTCTTCTTCTTTCAATTCTCATGTTTTGAGTTGCAATTTATGCATGTTTGAA GTATTATTTTGTATCATGACGTCTTGTATCACACTTGTATATAATGTAGTTCATATCATATATATGCTAAACTGACAATT GTCTAACACAGAATAGAAGTATTGGAAACATGTCAAAG
CDS sequence (LotjaGi3g1v0359500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGGTTGTTTCCTCCGCGCGCCTCCTCCATCATGACAACTCCAACCGCATCCGGCTCGGGTTCCGTCGTCTGGTTCCG GAAAGGTCTTCGGATCCACGACAACCCTGCTCTCGAGTTCGCTTCCCGAGGAGCTTCAAATCTCTACCCTGTCTTCGTCA TCGACCCGCATTACATGAAACCCGACCCGTACGCTTCCTCACCCGGATCCTCCCGCGCCGGTCTCAACCGCATCAATTTC TTGCTCCAGAGCCTTCGCGACCTTGATCTTAACCTGAAGAAACTCGGTTCAAGACTCTTGATTCTTAAGGGTGACCCTGC CGAAGTTCTCATTCAATGCTTGAAACAGTGGAATGTCAAGAAGTTATGCTTTGAGTATGACACTGAACCATATTATCAGG CTCTGGATATTAAAGTTAAGAGCTTTGCCGTTGCGGCAGGAATTGAAGTTTTCTCTCCTGTAAGTCACACACTCTTCAAT CCAATGGACATTATACAGAAGAATGGAGGGAAGCCGCCGCTTAGTTATCAATCATTTGTCAAGCTTGCTGGGGATCCGCC TTCCCCTCTTTTGACCGAGCTATCTTCACTTCCTCCAGTAGGCCATCTTGGAGGCTGTGATATTTTTGAAGTTCCAACAG TCGAAGACCTTGGATATGAAGATGCTAAACAGGATGAGTTTTCTCCTTTCAAAGGTGGTGAATCAGAAGCATTGAAGAGG TTGGAAGAATGCATGAAAGACAAGAAGTGGGTGGCAAACTTTGAGAAGCCAAAGGGCAATCCAGCTGCATTCCTTAGGCC CGCAACAACTATTTTATCACCTTACTTGAAATTTGGTTGTCTCTCTTCCAGATATTTCTACCATTGCATTCAAGATGCAT ATAAAAGTGTGTCAAAGCATACATCTCCACCTGTTTCTCTTCTAGGACAGTTGTTATGGCGAGACTTCTTTTACACAGCA GCTTTTGGGACTCCAAATTTTGATAGGATGAGAGGCAACAGGATTTGCAAGCAGATTCCTTGGAAGGATGATGATAAATT GTTGGAGGCTTGGAGGGAGGCTAGGACAGGGTTTCCTTGGATTGATGCTATCATGGTCCAGCTACGTCAATGGGGTTGGA TGCATCATTTGGCACGACATTCTGTTGCATGTTTTCTCACGCGAGGTGATCTGTTTGTTCATTGGGAAAAAGGACGTGAT GTCTTTGAGAGGCTTCTGATTGATTCAGATTGGGCGATTAATAACGGAAACTGGATGTGGCTCTCATGTTCATCTTTCTT TTATCAGTATAATCGGATTTATTCCCCAATCACATTTGGGAAGAAGTATGACCCCAATGGGGATTATATTAGGCATTTTC TCCCAGTCTTAAAAGATATGCCCAAACAGTACATTTATGAACCTTGGACTGCTCCTATAAGCATCCAGACCAAAGCAAAT TGCATAATTGGCAAAGACTACCCAATGCCAGTTGTTTCTCATGATTTAGCAAATAAAGAGTGTCGAAGGAAAATGGGGGA GGCATATGCATTGAATAGAAAATTGAATGGTTTGGTTAGTGAAGATGAGCTGAAACACTTGAGAAGGAAATTAGATGCAG GTGAAGAGCAAGAGGCTAAAGCTAAAAGATCTAGGCAACAGCTGATTGGCTGA
Protein sequence (LotjaGi3g1v0359500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRLFPPRASSIMTTPTASGSGSVVWFRKGLRIHDNPALEFASRGASNLYPVFVIDPHYMKPDPYASSPGSSRAGLNRINF LLQSLRDLDLNLKKLGSRLLILKGDPAEVLIQCLKQWNVKKLCFEYDTEPYYQALDIKVKSFAVAAGIEVFSPVSHTLFN PMDIIQKNGGKPPLSYQSFVKLAGDPPSPLLTELSSLPPVGHLGGCDIFEVPTVEDLGYEDAKQDEFSPFKGGESEALKR LEECMKDKKWVANFEKPKGNPAAFLRPATTILSPYLKFGCLSSRYFYHCIQDAYKSVSKHTSPPVSLLGQLLWRDFFYTA AFGTPNFDRMRGNRICKQIPWKDDDKLLEAWREARTGFPWIDAIMVQLRQWGWMHHLARHSVACFLTRGDLFVHWEKGRD VFERLLIDSDWAINNGNWMWLSCSSFFYQYNRIYSPITFGKKYDPNGDYIRHFLPVLKDMPKQYIYEPWTAPISIQTKAN CIIGKDYPMPVVSHDLANKECRRKMGEAYALNRKLNGLVSEDELKHLRRKLDAGEEQEAKAKRSRQQLIG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 11 | 11 | - | – | |
| MobiDBLite | 1 | 20 | 20 | - | – | |
| Gene3D | 19 | 155 | 137 | 1.2E-40 | ||
| ProSiteProfiles | 20 | 158 | 139 | 36.685 | ||
| SUPERFAMILY | 21 | 198 | 178 | 3.14E-46 | ||
| Pfam | 22 | 181 | 160 | 1.9E-43 | ||
| PANTHER | 23 | 512 | 490 | 1.8E-219 | – | |
| PANTHER | 23 | 512 | 490 | 1.8E-219 | – | |
| SUPERFAMILY | 217 | 511 | 295 | 6.8E-98 | ||
| Pfam | 308 | 505 | 198 | 1.1E-76 | ||
| Gene3D | 325 | 549 | 225 | 9.2E-100 | – | |
| Coils | 524 | 544 | 21 | - | – | |
| MobiDBLite | 531 | 550 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0359500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…