Domain Predictions — View

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IPR036134

Source: InterPro

Description

IPR036134 is a Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily.

<p>This entry represents a multi-helical domain, composed of two alpha subdomains, found in the C terminus of the cryptochrome proteins and DNA photolyases. It acts as a FAD-binding domain [[cite:PUB00029173]].</p> <p>The cryptochrome and photolyase families consist of structurally related flavin adenine dinucleotide (FAD) proteins that use the absorption of blue light to accomplish different tasks. The photolyasess use the blue light for light-driven electron transfer to repair UV-damaged DNA, while the cryptochromes are blue-light photoreceptors involved in the circadian clock for plants and animals [[cite:PUB00076729], [cite:PUB00076730]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 14

Transcript	Name	Description	Predicted domains	Domain count
LotjaGi1g1v0145900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cryptochrome 1; TAIR: AT4G08920.1 cryptochrome 1; Swiss-Prot: sp\|Q43125\|CRY1_ARATH Cryptochrome-1; TrEMBL-Plants: tr\|A0A0L9UYT7\|A0A0L9UYT7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0145900	Domains G3DSA:1.10.579.10 G3DSA:1.25.40.80 G3DSA:3.40.50.620 IPR002081 IPR005101 IPR006050 IPR014134 IPR014729 IPR018394 IPR020978 IPR036134 IPR036155 PF00875 PF03441 PF12546 PR00147 PS00394 PS00691 PS51645 PTHR11455 PTHR11455:SF50 SSF48173 SSF52425 TIGR02766 mobidb-lite	25
LotjaGi1g1v0145900.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cryptochrome 1; TAIR: AT4G08920.1 cryptochrome 1; Swiss-Prot: sp\|Q43125\|CRY1_ARATH Cryptochrome-1; TrEMBL-Plants: tr\|A0A0L9UYT7\|A0A0L9UYT7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0145900	Domains G3DSA:1.10.579.10 G3DSA:1.25.40.80 G3DSA:3.40.50.620 IPR002081 IPR005101 IPR006050 IPR014134 IPR014729 IPR018394 IPR020978 IPR036134 IPR036155 PF00875 PF03441 PF12546 PR00147 PS00394 PS00691 PS51645 PTHR11455 PTHR11455:SF50 SSF48173 SSF52425 TIGR02766 mobidb-lite	25
LotjaGi1g1v0243300.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cryptochrome 1; TAIR: AT4G08920.1 cryptochrome 1; Swiss-Prot: sp\|Q43125\|CRY1_ARATH Cryptochrome-1; TrEMBL-Plants: tr\|D0FZ12\|D0FZ12_SOYBN Cryptochrome1; Found in the gene: LotjaGi1g1v0243300	Domains Coil G3DSA:1.10.579.10 G3DSA:1.25.40.80 G3DSA:3.40.50.620 IPR002081 IPR005101 IPR006050 IPR014134 IPR014729 IPR018394 IPR020978 IPR036134 IPR036155 PF00875 PF03441 PF12546 PR00147 PS00394 PS00691 PS51645 PTHR11455 PTHR11455:SF50 SSF48173 SSF52425 TIGR02766 mobidb-lite	26
LotjaGi1g1v0243300.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cryptochrome 1; TAIR: AT4G08920.1 cryptochrome 1; Swiss-Prot: sp\|Q43125\|CRY1_ARATH Cryptochrome-1; TrEMBL-Plants: tr\|D0FZ12\|D0FZ12_SOYBN Cryptochrome1; Found in the gene: LotjaGi1g1v0243300	Domains Coil G3DSA:1.10.579.10 G3DSA:1.25.40.80 G3DSA:3.40.50.620 IPR002081 IPR005101 IPR006050 IPR014134 IPR014729 IPR018394 IPR020978 IPR036134 IPR036155 PF00875 PF03441 PF12546 PR00147 PS00394 PS00691 PS51645 PTHR11455 PTHR11455:SF50 SSF48173 SSF52425 TIGR02766 mobidb-lite	26
LotjaGi1g1v0392600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cryptochrome; TAIR: AT5G24850.1 cryptochrome 3; Swiss-Prot: sp\|Q84KJ5\|CRYD_ARATH Cryptochrome DASH, chloroplastic/mitochondrial; TrEMBL-Plants: tr\|G7JCC1\|G7JCC1_MEDTR Cryptochrome, DASH family protein; Found in the gene: LotjaGi1g1v0392600	Domains G3DSA:1.10.579.10 G3DSA:1.25.40.80 G3DSA:3.40.50.620 IPR002081 IPR005101 IPR006050 IPR014133 IPR014729 IPR036134 IPR036155 NON_CYTOPLASMIC_DOMAIN PF00875 PF03441 PR00147 PS51645 PTHR11455 PTHR11455:SF53 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF48173 SSF52425 SignalP-TM SignalP-noTM TIGR02765 mobidb-lite	27
LotjaGi2g1v0427200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Deoxyribodipyrimidine photo-lyase; TAIR: AT1G12370.2 photolyase 1; Swiss-Prot: sp\|Q9SB00\|PHR_ARATH Deoxyribodipyrimidine photo-lyase; TrEMBL-Plants: tr\|G7KG67\|G7KG67_MEDTR CPD photolyase; Found in the gene: LotjaGi2g1v0427200	Domains G3DSA:1.10.579.10 G3DSA:1.25.40.80 G3DSA:3.40.50.620 IPR006050 IPR008148 IPR014729 IPR032673 IPR036134 IPR036155 PF00875 PS01083 PS01084 PS51645 PTHR10211 SSF48173 SSF52425 TIGR00591 mobidb-lite	18
LotjaGi3g1v0359500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cryptochrome; TAIR: AT3G15620.1 DNA photolyase family protein; Swiss-Prot: sp\|O48652\|UVR3_ARATH (6-4)DNA photolyase; TrEMBL-Plants: tr\|A0A0S3T063\|A0A0S3T063_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0359500	Domains Coil G3DSA:1.10.579.10 G3DSA:3.40.50.620 IPR005101 IPR006050 IPR014729 IPR036134 IPR036155 PF00875 PF03441 PS51645 PTHR11455 PTHR11455:SF9 SSF48173 SSF52425 SignalP-TM mobidb-lite	17
LotjaGi3g1v0359500.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cryptochrome; TAIR: AT3G15620.1 DNA photolyase family protein; Swiss-Prot: sp\|O48652\|UVR3_ARATH (6-4)DNA photolyase; TrEMBL-Plants: tr\|A0A0S3T063\|A0A0S3T063_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0359500	Domains Coil G3DSA:1.10.579.10 G3DSA:3.40.50.620 IPR005101 IPR006050 IPR014729 IPR036134 IPR036155 PF00875 PF03441 PS51645 PTHR11455 PTHR11455:SF9 SSF48173 SSF52425 SignalP-TM mobidb-lite	17
LotjaGi3g1v0359500.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cryptochrome; TAIR: AT3G15620.1 DNA photolyase family protein; Swiss-Prot: sp\|O48652\|UVR3_ARATH (6-4)DNA photolyase; TrEMBL-Plants: tr\|A0A0S3T063\|A0A0S3T063_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0359500	Domains G3DSA:1.10.579.10 G3DSA:3.40.50.620 IPR005101 IPR006050 IPR014729 IPR036134 IPR036155 PF00875 PF03441 PS51645 PTHR11455 PTHR11455:SF9 SSF48173 SSF52425 SignalP-TM mobidb-lite	16
LotjaGi5g1v0191200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cryptochrome-1; TAIR: AT1G04400.1 cryptochrome 2; Swiss-Prot: sp\|Q96524\|CRY2_ARATH Cryptochrome-2; TrEMBL-Plants: tr\|A0A151U5N9\|A0A151U5N9_CAJCA Cryptochrome-2; Found in the gene: LotjaGi5g1v0191200	Domains G3DSA:1.10.579.10 G3DSA:1.25.40.80 G3DSA:3.40.50.620 IPR002081 IPR005101 IPR006050 IPR014134 IPR014729 IPR018394 IPR036134 IPR036155 PF00875 PF03441 PR00147 PS00394 PS00691 PS51645 PTHR11455 PTHR11455:SF54 SSF48173 SSF52425 TIGR02766 mobidb-lite	23
LotjaGi5g1v0250100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Photolyase/blue-light receptor 2; TAIR: AT2G47590.1 photolyase/blue-light receptor 2; Swiss-Prot: sp\|Q8LB72\|PHR2_ARATH Blue-light photoreceptor PHR2; TrEMBL-Plants: tr\|A0A151U4D0\|A0A151U4D0_CAJCA Blue-light photoreceptor PHR2; Found in the gene: LotjaGi5g1v0250100	Domains G3DSA:1.25.40.80 G3DSA:3.40.50.620 IPR006050 IPR014729 IPR036134 IPR036155 PF00875 PS51645 PTHR11455 PTHR11455:SF2 SSF48173 SSF52425 mobidb-lite	13
LotjaGi6g1v0005600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cryptochrome-1; TAIR: AT1G04400.1 cryptochrome 2; Swiss-Prot: sp\|Q96524\|CRY2_ARATH Cryptochrome-2; TrEMBL-Plants: tr\|V7BMM9\|V7BMM9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0005600	Domains Coil G3DSA:1.10.579.10 G3DSA:1.25.40.80 G3DSA:3.40.50.620 IPR002081 IPR005101 IPR006050 IPR014134 IPR014729 IPR018394 IPR036134 IPR036155 PF00875 PF03441 PR00147 PS00394 PS51645 PTHR11455 PTHR11455:SF54 SSF48173 SSF52425 TIGR02766 mobidb-lite	23
LotjaGi6g1v0005600.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cryptochrome-1; TAIR: AT1G04400.1 cryptochrome 2; Swiss-Prot: sp\|Q96524\|CRY2_ARATH Cryptochrome-2; TrEMBL-Plants: tr\|V7BMM9\|V7BMM9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0005600	Domains Coil G3DSA:1.10.579.10 G3DSA:1.25.40.80 G3DSA:3.40.50.620 IPR002081 IPR005101 IPR006050 IPR014134 IPR014729 IPR018394 IPR036134 IPR036155 PF00875 PF03441 PR00147 PS00394 PS51645 PTHR11455 PTHR11455:SF54 SSF48173 SSF52425 TIGR02766 mobidb-lite	23
LotjaGi6g1v0005600.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cryptochrome-1; TAIR: AT1G04400.1 cryptochrome 2; Swiss-Prot: sp\|Q96524\|CRY2_ARATH Cryptochrome-2; TrEMBL-Plants: tr\|V7BMM9\|V7BMM9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0005600	Domains Coil G3DSA:1.10.579.10 G3DSA:1.25.40.80 G3DSA:3.40.50.620 IPR002081 IPR005101 IPR006050 IPR014134 IPR014729 IPR018394 IPR036134 IPR036155 PF00875 PF03441 PR00147 PS00394 PS51645 PTHR11455 PTHR11455:SF54 SSF48173 SSF52425 TIGR02766 mobidb-lite	23

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	7.14