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IPR005101 is a Cryptochrome/DNA photolyase, FAD-binding domain.
<p>This entry represents a multi-helical domain found in the C terminus of the cryptochrome proteins and DNA photolyases. It acts as a FAD-binding domain [[cite:PUB00029173]].</p> <p>The cryptochrome and photolyase families consist of structurally related flavin adenine dinucleotide (FAD) proteins that use the absorption of blue light to accomplish different tasks. The photolyasess use the blue light for light-driven electron transfer to repair UV-damaged DNA, while the cryptochromes are blue-light photoreceptors involved in the circadian clock for plants and animals [[cite:PUB00076729], [cite:PUB00076730]].</p>
This description is obtained from EB-eye REST.
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | Cryptochrome 1, partial [Lotus japonicus] gi|477504441|dbj|BAN14730.1| | 9 | ||
| – | Cryptochrome [Medicago truncatula] gi|357489649|ref|XP_003615112.1| | 19 | ||
| – | Cryptochrome-1-like [Glycine max] gi|359806517|ref|NP_001241002.1| | 24 | ||
| – | PREDICTED: cryptochrome DASH, chloroplastic/mitochondrial-like [Cicer arietinum] gi|502132182|ref|XP_004501253.1| | 13 | ||
| – | Cryptochrome 1, partial [Lotus japonicus] gi|477504443|dbj|BAN14731.1| | 10 | ||
| – | PREDICTED: deoxyribodipyrimidine photo-lyase-like [Cicer arietinum] gi|502160136|ref|XP_004511645.1| | 18 | ||
| – | PREDICTED: cryptochrome-2-like [Glycine max] gi|356576533|ref|XP_003556385.1| | 21 | ||
| – | PREDICTED: blue-light photoreceptor PHR2-like [Cicer arietinum] gi|502117786|ref|XP_004495945.1| | 7 | ||
| – | PREDICTED: cryptochrome-2-like isoform X1 [Cicer arietinum] gi|502122637|ref|XP_004497843.1| | 21 | ||
| – | PREDICTED: cryptochrome-2-like isoform X1 [Cicer arietinum] gi|502122637|ref|XP_004497843.1| | 21 | ||
| – | Cryptochrome 1; TAIR: AT4G08920.1 cryptochrome 1; Swiss-Prot: sp|Q43125|CRY1_ARATH Cryptochrome-1; TrEMBL-Plants: tr|A0A0L9UYT7|A0A0L9UYT7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0145900 | 25 | ||
| – | Cryptochrome 1; TAIR: AT4G08920.1 cryptochrome 1; Swiss-Prot: sp|Q43125|CRY1_ARATH Cryptochrome-1; TrEMBL-Plants: tr|A0A0L9UYT7|A0A0L9UYT7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0145900 | 25 | ||
| – | Cryptochrome 1; TAIR: AT4G08920.1 cryptochrome 1; Swiss-Prot: sp|Q43125|CRY1_ARATH Cryptochrome-1; TrEMBL-Plants: tr|D0FZ12|D0FZ12_SOYBN Cryptochrome1; Found in the gene: LotjaGi1g1v0243300 | 26 | ||
| – | Cryptochrome 1; TAIR: AT4G08920.1 cryptochrome 1; Swiss-Prot: sp|Q43125|CRY1_ARATH Cryptochrome-1; TrEMBL-Plants: tr|D0FZ12|D0FZ12_SOYBN Cryptochrome1; Found in the gene: LotjaGi1g1v0243300 | 26 | ||
| – | Cryptochrome; TAIR: AT5G24850.1 cryptochrome 3; Swiss-Prot: sp|Q84KJ5|CRYD_ARATH Cryptochrome DASH, chloroplastic/mitochondrial; TrEMBL-Plants: tr|G7JCC1|G7JCC1_MEDTR Cryptochrome, DASH family protein; Found in the gene: LotjaGi1g1v0392600 | 27 | ||
| – | Cryptochrome; TAIR: AT3G15620.1 DNA photolyase family protein; Swiss-Prot: sp|O48652|UVR3_ARATH (6-4)DNA photolyase; TrEMBL-Plants: tr|A0A0S3T063|A0A0S3T063_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0359500 | 17 | ||
| – | Cryptochrome; TAIR: AT3G15620.1 DNA photolyase family protein; Swiss-Prot: sp|O48652|UVR3_ARATH (6-4)DNA photolyase; TrEMBL-Plants: tr|A0A0S3T063|A0A0S3T063_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0359500 | 17 | ||
| – | Cryptochrome; TAIR: AT3G15620.1 DNA photolyase family protein; Swiss-Prot: sp|O48652|UVR3_ARATH (6-4)DNA photolyase; TrEMBL-Plants: tr|A0A0S3T063|A0A0S3T063_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0359500 | 16 | ||
| – | Cryptochrome-1; TAIR: AT1G04400.1 cryptochrome 2; Swiss-Prot: sp|Q96524|CRY2_ARATH Cryptochrome-2; TrEMBL-Plants: tr|A0A151U5N9|A0A151U5N9_CAJCA Cryptochrome-2; Found in the gene: LotjaGi5g1v0191200 | 23 | ||
| – | Cryptochrome-1; TAIR: AT1G04400.1 cryptochrome 2; Swiss-Prot: sp|Q96524|CRY2_ARATH Cryptochrome-2; TrEMBL-Plants: tr|V7BMM9|V7BMM9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0005600 | 23 | ||
| – | Cryptochrome-1; TAIR: AT1G04400.1 cryptochrome 2; Swiss-Prot: sp|Q96524|CRY2_ARATH Cryptochrome-2; TrEMBL-Plants: tr|V7BMM9|V7BMM9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0005600 | 23 | ||
| – | Cryptochrome-1; TAIR: AT1G04400.1 cryptochrome 2; Swiss-Prot: sp|Q96524|CRY2_ARATH Cryptochrome-2; TrEMBL-Plants: tr|V7BMM9|V7BMM9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0005600 | 23 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 4.55 |