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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0359500 |
| Transcript ID | LotjaGi3g1v0359500.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cryptochrome; TAIR: AT3G15620.1 DNA photolyase family protein; Swiss-Prot: sp|O48652|UVR3_ARATH (6-4)DNA photolyase; TrEMBL-Plants: tr|A0A0S3T063|A0A0S3T063_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0359500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:74175526..74179407) extracted from Lotus japonicus Gifu genome v1.2.
ACATTAAGGCGCGAACCAAAACAGTTTATTTCAAATCCAATCCCATGCGGTTGTTTCCTCCGCGCGCCTCCTCCATCATG ACAACTCCAACCGCATCCGGCTCGGGTTCCGTCGTCTGGTTCCGGAAAGGTCTTCGGATCCACGACAACCCTGCTCTCGA GTTCGCTTCCCGAGGAGCTTCAAATCTCTACCCTGTCTTCGTCATCGACCCGCATTACATGAAACCCGACCCGTACGCTT CCTCACCCGGATCCTCCCGCGCCGGTCTCAACCGCATCAATTTCTTGCTCCAGAGCCTTCGCGACCTTGATCTTAACCTG AAGAAACTCGGTTCAAGACTCTTGATTCTTAAGGGTGACCCTGCCGAAGTTCTCATTCAATGCTTGAAACAGGTATTTCC CAAAAAAAATTTACAATGTCACTGTCACCATCAACGTTTTTGTCAACCGACCAATTATCCCAAAAGCTTAAGCAGATAGG TAAGGGTCACATGGTTTTAATTATTATATTCTAATACGCCCGCTCACGCAAGAGTTATTTGGGCTTGAAGCGTGGATAAA TGCACAGACCCCGCCTACGTGTGTTTAAATTCCACTTTTTAATTTGAAAGTGAGGAGAGCAAAGATCTAACTCTAGACCG CTAAGTCATAGAGACTCTGATACGATATCAATCAAGCAACCAATTATCTCGAATGGTTTTATATTACATTGTAACAGTTT TTGGCTTGTTTTGTTCTACCCAAATTGTTTGGAAATTTTCAATTTTTTTTAAATTTCGTTTTTTTTATTCTGTTTTTGGA TAGAGACAAAACTTAGGGTAGTTAATTCTGTTAGTTCTTTTGGTTGATGCAGTGGAATGTCAAGAAGTTATGCTTTGAGT ATGACACTGAACCATATTATCAGGCTCTGGATATTAAAGTTAAGGTAATGTTTATTTGAGAGTTCAAGGAATGTGTTAGT CATTTGTTATTGTTTTGGACCTATGGTTATGTGATGTGGACATGAACATGTGACTTTGATAATAACTTGAAGGCATTCTT TGTTTTGTTTCGACAGAGCTTTGCCGTTGCGGCAGGAATTGAAGTTTTCTCTCCTGTAAGTCACACACTCTTCAATCCAA TGGACATTATACAGAAGGTGAGTTTGAAGCTTGAACAAATTGAAATTGTCTTCAATTTAACTATTGATTTAAGTCATTTT TACTAGGCAAAATGAATAGTTCCTTCCCCCAACTTTTCTACCTATTATCTATGTGCTGCTGAACTTTGAATCCTAGGTCA TCTATTGTTTATTGCTTTTGTTCTGATGTTGTTGACTCATGTTCGATTTGCCTGTGTTCTTTGCGAATGCTGAAAAAGAA TGGAGGGAAGCCGCCGCTTAGTTATCAATCATTTGTCAAGCTTGCTGGGGATCCGCCTTCCCCTCTTTTGACCGAGCTAT CTTCACTTCCTCCAGTAGGCCATCTTGGAGGCTGTGATATTTTTGAAGTTCCAACAGTCGAAGACCTTGGATATGAAGAT GCTAAACAGGTGGGCATGTTATATTTTTAGATTATCCCTGTTAATTAGCATCTTATGAGAGATGTTATATTCAGGATGAG TTTTCTCCTTTCAAAGGTGGTGAATCAGAAGCATTGAAGAGGTTGGAAGAATGCATGAAAGACAAGGTACTTCCATGTCA CGATGCAAGTTCATCAGTATTCAATATAAATTTGATGTTTCTTGCTGATAGTTCCACTGCTTGTAATTGGTAATGTATCA TGCTGTTATAATAGTCATTCTGCTTCATGCCTTAGTTTCTTATTTTTATGATTTTAGAAGTGGGTGGCAAACTTTGAGAA GCCAAAGGGCAATCCAGCTGCATTCCTTAGGCCCGCAACAACTATTTTATCACCTTACTTGAAAGTAAGTCAAAACCTAT TACATCTGTACTGTTTGAAAGATCTATTTTCCTTGATTGAACTACTTTCTACAATCGAACCATATCTTTTCTATATTTAT TGCTTCTTATTAATCTCCTCCGCAGTTTGGTTGTCTCTCTTCCAGATATTTCTACCATTGCATTCAAGATGCATATAAAA GTGTGTCAAAGCATACATCTCCACCTGTTTCTCTTCTAGGACAGGTCATGTTATCTCCAGAAATTAGTATGGTATTGTTT TTCAAATTCTACTTTTAGGAAACTGAATGAAGCTGTTATCTTGGGGACATGTGCAGTTGTTATGGCGAGACTTCTTTTAC ACAGCAGCTTTTGGGACTCCAAATTTTGATAGGATGAGAGGCAACAGGATTTGCAAGCAGGTGGGATAATAATGCTTGCT AATGAATATTATTTACCAATTTTAAGTTTGATTCAAAGAAGAGATAACAAAGGTTAAGGAAGAAATAGATATGTTGAGGT GTGTATTCAGCTTACACTAATTATTGACTAGAATTGTACGTTAACACATGAAATACTTCTGCTTTTAAACACTAAATATC ACTAGCTAGCTTATTATTTTTATGCTTCAAGGACTCTTATTTCTGCTATACTTCTATGTCCTTATATCCTGATTATTATT GATGTGTTGAGTATTTGACATTTATCTAATACTATGCGGTTGTTCTCATATTAATACTCCTTTGTTAAAAGCAAATGTAT GCTTAATTATTATCTGCTTGAAATTTATTTTTGCAGATTCCTTGGAAGGATGATGATAAATTGTTGGAGGCTTGGAGGGA GGCTAGGACAGGGTTTCCTTGGATTGATGCTATCATGGTCCAGGTTTGGGTTTTAACATCCTTTTCTAAATAGAACTGAT GAACAATAGGGTTATTACTTTGAAGTTGTGTAGCTAAAATCCAGTCCACGATGATACTTTTATCAGCCTTCTACTCAGGA AGTACATTTGACTTTGTCTTTTGTTGTTGTAGCTACGTCAATGGGGTTGGATGCATCATTTGGCACGACATTCTGTTGCA TGTTTTCTCACGCGAGGTGATCTGGTATATTACTTCTATACTCCCAAAGCATACTGAAATTCTTATAATTTGTTATTATA TACTAATGTTTTTCAGTTTATGCTGACAGTTTGTTCATTGGGAAAAAGGACGTGATGTCTTTGAGAGGCTTCTGATTGAT TCAGATTGGGCGATTAATAACGGAAACTGGATGTGGCTCTCATGTTCATCTTTCTTTTATCAGGTATGAAGTATACTGCA TTACTAGTTTTGAATTTTTAGTGGAAATTGACTAAATTTTATGTTCTCTTGAGTTTAAATGCTGAAGTCTCCACTGATAT TTTCATCATGTATTGTCTATCATGATCAGTATAATCGGATTTATTCCCCAATCACATTTGGGAAGAAGTATGACCCCAAT GGGGATTATATTAGGCATTTTCTCCCAGTCTTAAAAGGTACTTTTAAGTTTCCTCAATTCCACCATGTCCTATCATCTAG TAAGCTTTCAATAGATAAGGTGCTAGAACTTAAAATGGAATGTCTCATAGCAGATATGCCCAAACAGTACATTTATGAAC CTTGGACTGCTCCTATAAGCATCCAGACCAAAGCAAATTGCATAATTGGCAAAGACTACCCAATGCCAGGTGAGTTATCT CATGCCTGTTTAATTGGATTTCAACTGTGGATCATGCATAACATGTGGTATTTCATATTAAGTTATTAACCCTGCTTATG CTATGTGTGTTGTGTTTCAGTTGTTTCTCATGATTTAGCAAATAAAGAGTGTCGAAGGAAAATGGGGGAGGCATATGCAT TGAATAGAAAATTGAATGGTTTGGTTAGTGAAGATGAGCTGAAACACTTGAGAAGGAAATTAGATGCAGGTGAAGAGCAA GAGGCTAAAGCTAAAAGATCTAGGCAACAGCTGATTGGCTGA
CDS sequence (LotjaGi3g1v0359500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGGTTGTTTCCTCCGCGCGCCTCCTCCATCATGACAACTCCAACCGCATCCGGCTCGGGTTCCGTCGTCTGGTTCCG GAAAGGTCTTCGGATCCACGACAACCCTGCTCTCGAGTTCGCTTCCCGAGGAGCTTCAAATCTCTACCCTGTCTTCGTCA TCGACCCGCATTACATGAAACCCGACCCGTACGCTTCCTCACCCGGATCCTCCCGCGCCGGTCTCAACCGCATCAATTTC TTGCTCCAGAGCCTTCGCGACCTTGATCTTAACCTGAAGAAACTCGGTTCAAGACTCTTGATTCTTAAGGGTGACCCTGC CGAAGTTCTCATTCAATGCTTGAAACAGTTATGCTTTGAGTATGACACTGAACCATATTATCAGGCTCTGGATATTAAAG TTAAGAGCTTTGCCGTTGCGGCAGGAATTGAAGTTTTCTCTCCTGTAAGTCACACACTCTTCAATCCAATGGACATTATA CAGAAGAATGGAGGGAAGCCGCCGCTTAGTTATCAATCATTTGTCAAGCTTGCTGGGGATCCGCCTTCCCCTCTTTTGAC CGAGCTATCTTCACTTCCTCCAGTAGGCCATCTTGGAGGCTGTGATATTTTTGAAGTTCCAACAGTCGAAGACCTTGGAT ATGAAGATGCTAAACAGGATGAGTTTTCTCCTTTCAAAGGTGGTGAATCAGAAGCATTGAAGAGGTTGGAAGAATGCATG AAAGACAAGAAGTGGGTGGCAAACTTTGAGAAGCCAAAGGGCAATCCAGCTGCATTCCTTAGGCCCGCAACAACTATTTT ATCACCTTACTTGAAATTTGGTTGTCTCTCTTCCAGATATTTCTACCATTGCATTCAAGATGCATATAAAAGTGTGTCAA AGCATACATCTCCACCTGTTTCTCTTCTAGGACAGTTGTTATGGCGAGACTTCTTTTACACAGCAGCTTTTGGGACTCCA AATTTTGATAGGATGAGAGGCAACAGGATTTGCAAGCAGATTCCTTGGAAGGATGATGATAAATTGTTGGAGGCTTGGAG GGAGGCTAGGACAGGGTTTCCTTGGATTGATGCTATCATGGTCCAGCTACGTCAATGGGGTTGGATGCATCATTTGGCAC GACATTCTGTTGCATGTTTTCTCACGCGAGGTGATCTGTTTGTTCATTGGGAAAAAGGACGTGATGTCTTTGAGAGGCTT CTGATTGATTCAGATTGGGCGATTAATAACGGAAACTGGATGTGGCTCTCATGTTCATCTTTCTTTTATCAGTATAATCG GATTTATTCCCCAATCACATTTGGGAAGAAGTATGACCCCAATGGGGATTATATTAGGCATTTTCTCCCAGTCTTAAAAG ATATGCCCAAACAGTACATTTATGAACCTTGGACTGCTCCTATAAGCATCCAGACCAAAGCAAATTGCATAATTGGCAAA GACTACCCAATGCCAGTTGTTTCTCATGATTTAGCAAATAAAGAGTGTCGAAGGAAAATGGGGGAGGCATATGCATTGAA TAGAAAATTGAATGGTTTGGTTAGTGAAGATGAGCTGAAACACTTGAGAAGGAAATTAGATGCAGGTGAAGAGCAAGAGG CTAAAGCTAAAAGATCTAGGCAACAGCTGATTGGCTGA
Protein sequence (LotjaGi3g1v0359500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRLFPPRASSIMTTPTASGSGSVVWFRKGLRIHDNPALEFASRGASNLYPVFVIDPHYMKPDPYASSPGSSRAGLNRINF LLQSLRDLDLNLKKLGSRLLILKGDPAEVLIQCLKQLCFEYDTEPYYQALDIKVKSFAVAAGIEVFSPVSHTLFNPMDII QKNGGKPPLSYQSFVKLAGDPPSPLLTELSSLPPVGHLGGCDIFEVPTVEDLGYEDAKQDEFSPFKGGESEALKRLEECM KDKKWVANFEKPKGNPAAFLRPATTILSPYLKFGCLSSRYFYHCIQDAYKSVSKHTSPPVSLLGQLLWRDFFYTAAFGTP NFDRMRGNRICKQIPWKDDDKLLEAWREARTGFPWIDAIMVQLRQWGWMHHLARHSVACFLTRGDLFVHWEKGRDVFERL LIDSDWAINNGNWMWLSCSSFFYQYNRIYSPITFGKKYDPNGDYIRHFLPVLKDMPKQYIYEPWTAPISIQTKANCIIGK DYPMPVVSHDLANKECRRKMGEAYALNRKLNGLVSEDELKHLRRKLDAGEEQEAKAKRSRQQLIG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 11 | 11 | - | – | |
| MobiDBLite | 1 | 20 | 20 | - | – | |
| Gene3D | 17 | 150 | 134 | 9.2E-36 | ||
| ProSiteProfiles | 20 | 153 | 134 | 34.14 | ||
| SUPERFAMILY | 21 | 193 | 173 | 1.02E-41 | ||
| Pfam | 22 | 176 | 155 | 1.1E-37 | ||
| PANTHER | 23 | 507 | 485 | 1.0E-213 | – | |
| PANTHER | 23 | 507 | 485 | 1.0E-213 | – | |
| SUPERFAMILY | 212 | 506 | 295 | 6.67E-98 | ||
| Pfam | 303 | 500 | 198 | 1.1E-76 | ||
| Gene3D | 320 | 544 | 225 | 9.0E-100 | – | |
| Coils | 519 | 539 | 21 | - | – | |
| MobiDBLite | 526 | 545 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0359500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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