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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0364100 |
Transcript ID | LotjaGi3g1v0364100.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Pyridoxal 5'-phosphate synthase subunit PdxS; TAIR: AT3G16050.1 pyridoxine biosynthesis 1.2; Swiss-Prot: sp|Q9ZNR6|PDX12_ARATH Pyridoxal 5'-phosphate synthase-like subunit PDX1.2; TrEMBL-Plants: tr|V4SSW9|V4SSW9_9ROSI Uncharacterized protein; Found in the gene: LotjaGi3g1v0364100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:74981976..74984607) extracted from Lotus japonicus Gifu genome v1.2.
GTGGGGATGGGTTTCAGGGGTGGGTTGCAGGTGAGAAAGGGGACGACAGAGACAGAGGGAGGAAGAGGGACAAGGAGCGG ATAGAATCGATGGTGATGGGGCACTGAGTTGAAGGCAGGGGCAAGGAAGAAGAGCTCATGATCTGGAAAGAAAGGAAGAA GAGCTTCACCTTTCTTCTCCCTATTTGGTTCTGACTTCTGATTCTCTTACTCTATATATTGGATGATGTTGTTTTGAGTT TTGGGTTGATGTTGTTTGTTTCTAGTGTTCTAGTTTGTTTTGTTCAAGAAATTGGGTTGGAGAAATTGGGCTGGAGGAAG AAGATGATAGGTGTTGACATTCCCCTGATTCCCCACGCCAAGATGAATTCGGGTTCAATGTTTCTTTAGATCGAAAAGCT TCAAATGTGGATTCAGTGGGTAGTATTTGGATGGCTCTTCCACTTGTGAATTTCTGTAATTTTTTCCTTTTTGGAGGAAG AAGATAATGTTTTTCTCGAGTTTCTGGAGTTTTGTGGAGTTTCTGGAGTTTTGTGATAGTTTTCTTTTTCAATTGAGGAT TAAGTGGTTGTAATTAATGCTTATTTGGATTTTTATTTTTAATTAATAATTAATAATAATTTTTATATTTTTCCTTGCCA CGTCATATAAGTAAACCCAGTCAGCATGCCTATTCATCACTCGCCGGAGCTCCGGGCTCCGGCGAGGACCTGCTCCAAAC TTATTGCAAACGAGAGGACCCAGATTTGCAAATTTTCCGGGGAGAGACTAATTTCAGACGGTGAGACAAAGACGATTAAC CCTATTTTTAATAAATAGAAAACCTTAAGCCAGGCCCAAACTGTGAACCACAATAAGGGAGGTCGGTGCGGTGGCATATT CTTTCCGACATGGAATCGAACTTTCTACATCTCAGCACAGACTCACTCGAATTTTCTGGAAACCACACTCTAACATCAAT TTCCTCCCTAATTTACTTACTTCCTACTTCCCACTAAACCAAACTACACACACACACACACACACCATTGACCATTGTTC ATCTCTCTGAGGCATTTCCACAAACACTTGGCGACAATGGCTGAAGAAGACGGAGGAGCAGTCACCCTCTACAACACCAC CGTCATCACCGATCCAAAACAGAACCCCTACTCCTTCAAACTCGGAGCCGTCCAGACACTCCGCGGCGGCGCCATTCTCC AAGTCTCCACCCCTCACCAAGCCAAGATCGCCGAACAAGCCGGCGCATGCGCCATCACCGTCTCCGACCCCCTCCGCCCC GCCATTTCCCGCATGACCGACCCTTCCCTCATCAAAGACATCAAACGCACCGTCTCGATCCCCATCCTCTCCCGCGCCCG CGTCGGCCACTTCGTCGAAGCCCAGATTCTCGAATCCACCGGCGTCGATTACATCGACGAGAGCGAGATTCTCTCCCCCG CCGACGACCACAACCACATCAACAAGCATAATTTCAGGTGCCCTTTTGTCTGCGGTGCCAGAACCCTCGGCGAGGCCCTC CGGAGGATCAGGGAAGGCGCGGCGATGGTAAGAATCCAAGGCGATTTGTCAGGTTCCGGCAACATTGCGGAAACTGTGAA GAATGTGAGGTCTGTGATGGGGGAATTGAGGGCTCTGAGCAACATGGATGAGGATGAGGTTTTCGCTTTCGCGAAGAAGA TTGAAGCTCCTTATGATCTGGTTGCGCAGACGAAGCAGATGGGTAGGCTGCCCGTTGTGCATTTTGCCGCCGGAGGCATT GTGACGCCGGCGGATGCGGCGTTGATGATGCAGCTGGGTTGTCATGGTGTGTTTGTGGGATCTGAGGTTTTCAATTGTGA GGATCCATTCAAGCGTGTTAGGGGTATAATTCAAGCTGTTAGGAACTATAATGATCCTCATGTTTTGGTTGAATCTATGG CAAATCTTAATCTTGGCGATGACATGATTGAGATGGAGCCATTTGGTGCTGCAAATGTTGTCTAGTGTAATGGCTATGTA TTCATGCCTTTTGTTGTGTATCTCTTTTCTGTTATACAATAGCAATACTAAATTTGTATCAATGAGTACTGTGTATGTGT TTAAGCTTATGAAATTGGTCTCTTTTCTTTTCTGATACTATGTGGAATTTGCATTGCATCTAGTTTTGGTGAAAGTGCTG AGATAAATTGATGGTTTCTTTTTGTGTGAAATTGTTCTATGTTAAGTTGATGACATTGTCATTAGCATGCAATGGCAAAT TGTTGTTCTATTGGCCCCATTGCTACATATAGACTTCACAATCAATGAATATACATGGAATATCTGTTTGTTTTATAGTT AGGTAACTTCTTTTAAAACAAAATTCATCCATTAAGAAGAAGCATGCACCAAGGACAATACATCAGTTTGGACCACCTCC TTCTCCTTCGGAGAAAATTCTATTACCAGCATGATGAATAAAAGAAAAATCCATATAATCAAAATGAGAAGCTAAGTCAT GACAGTCATGAAGCCTGAAGCAACATAGGATGTGTCACCGCATTAGCCCTTCCAAGTTTTAATCAATTGAATGATAGGTA AAAGTAATTTAATAAAAGTAAGTTTAGATAAATGAATTTGTGTTTGAGAATGATGTATAAAAGTAAATTTTT
CDS sequence (LotjaGi3g1v0364100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGAAGAAGACGGAGGAGCAGTCACCCTCTACAACACCACCGTCATCACCGATCCAAAACAGAACCCCTACTCCTT CAAACTCGGAGCCGTCCAGACACTCCGCGGCGGCGCCATTCTCCAAGTCTCCACCCCTCACCAAGCCAAGATCGCCGAAC AAGCCGGCGCATGCGCCATCACCGTCTCCGACCCCCTCCGCCCCGCCATTTCCCGCATGACCGACCCTTCCCTCATCAAA GACATCAAACGCACCGTCTCGATCCCCATCCTCTCCCGCGCCCGCGTCGGCCACTTCGTCGAAGCCCAGATTCTCGAATC CACCGGCGTCGATTACATCGACGAGAGCGAGATTCTCTCCCCCGCCGACGACCACAACCACATCAACAAGCATAATTTCA GGTGCCCTTTTGTCTGCGGTGCCAGAACCCTCGGCGAGGCCCTCCGGAGGATCAGGGAAGGCGCGGCGATGGTAAGAATC CAAGGCGATTTGTCAGGTTCCGGCAACATTGCGGAAACTGTGAAGAATGTGAGGTCTGTGATGGGGGAATTGAGGGCTCT GAGCAACATGGATGAGGATGAGGTTTTCGCTTTCGCGAAGAAGATTGAAGCTCCTTATGATCTGGTTGCGCAGACGAAGC AGATGGGTAGGCTGCCCGTTGTGCATTTTGCCGCCGGAGGCATTGTGACGCCGGCGGATGCGGCGTTGATGATGCAGCTG GGTTGTCATGGTGTGTTTGTGGGATCTGAGGTTTTCAATTGTGAGGATCCATTCAAGCGTGTTAGGGGTATAATTCAAGC TGTTAGGAACTATAATGATCCTCATGTTTTGGTTGAATCTATGGCAAATCTTAATCTTGGCGATGACATGATTGAGATGG AGCCATTTGGTGCTGCAAATGTTGTCTAG
Protein sequence (LotjaGi3g1v0364100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEEDGGAVTLYNTTVITDPKQNPYSFKLGAVQTLRGGAILQVSTPHQAKIAEQAGACAITVSDPLRPAISRMTDPSLIK DIKRTVSIPILSRARVGHFVEAQILESTGVDYIDESEILSPADDHNHINKHNFRCPFVCGARTLGEALRRIREGAAMVRI QGDLSGSGNIAETVKNVRSVMGELRALSNMDEDEVFAFAKKIEAPYDLVAQTKQMGRLPVVHFAAGGIVTPADAALMMQL GCHGVFVGSEVFNCEDPFKRVRGIIQAVRNYNDPHVLVESMANLNLGDDMIEMEPFGAANVV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 5 | 286 | 282 | 9.8E-160 | – | |
PANTHER | 5 | 286 | 282 | 9.8E-160 | ||
PIRSF | 13 | 299 | 287 | 1.5E-114 | ||
Gene3D | 17 | 297 | 281 | 1.9E-120 | ||
ProSiteProfiles | 27 | 279 | 253 | 87.241 | ||
Pfam | 27 | 225 | 199 | 5.6E-83 | ||
SUPERFAMILY | 38 | 276 | 239 | 2.35E-48 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
Biological process | Vitamin B6 biosynthetic process | The chemical reactions and pathways resulting in the formation of any of the vitamin B6 compounds; pyridoxal, pyridoxamine and pyridoxine and the active form, pyridoxal phosphate. | ||
Biological process | Pyridoxal phosphate biosynthetic process | The chemical reactions and pathways resulting in the formation of pyridoxal phosphate, pyridoxal phosphorylated at the hydroxymethyl group of C-5, the active form of vitamin B6. |
Expression pattern of LotjaGi3g1v0364100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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