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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0366600 |
Transcript ID | LotjaGi3g1v0366600.2 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Ras-like protein; TAIR: AT1G52280.1 RAB GTPase homolog G3D; Swiss-Prot: sp|O24461|RAB7_PRUAR Ras-related protein Rab7; TrEMBL-Plants: tr|A0A0B2SMG8|A0A0B2SMG8_GLYSO Ras-related protein Rab7; Found in the gene: LotjaGi3g1v0366600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:75279425..75282597) extracted from Lotus japonicus Gifu genome v1.2.
GTGTGGCATTCGTTGTCTAGTTGGTACCAATTCACTCGTGTTCCTCCACCTGTCTTTCAAAACTACTTCTCTTCTGTTCT GTCGCGCAAAAACCTCACACTTCACAAATTTTGGGGATCTTCACATAAACAAAGAAAAATAGTTTCCATTTTTCGAGTAA AACAAAGCTCCACCCACATCGTCTTCATCGATGGCATCTCGCCGCCGCATGTTACTCAAGGTCATAATCCTCGGAGATAG CGGGTACACTTCTTCTTCTTTCGTTTTCAATTTCATTTTTTTCCCTTTTGAATTTGATCAACAAATGGCTGATTATGATA TCTAGAACAATTTAATAAAATGGGTTGTCGCATTTTTCTTCGAATTTTGTAGCTTTGATTGAAAGTTCCAATCTTTTGTT TCTCTTGCAAGCGAAAATAAATTAATGAATTTTTGTTTATGATTTGAAAAAGGGAAATGATTGAATAATGAGACTGTTTG GATTCTTTGAAACATGAAACTTTACTGTTTTTTACAGGAAAGATCGTTATAGATCCAATAGATTTGCAATTTTGTCACAT GGGCTAAATTCATGTCATACTAATTGTGTTTTCTTTTTCTTTTTTGGCAGGGTTGGTAAAACATCCTTGATGAATCAGTA TGTCAGATATCTTTAATTTTTCTTTCAGGCAAAGTTTGGTGAATATTCTTTTATTTGATTTGTATTATCATGATCATTAT TTATTTTCTTTGCATCTAGGTATGTGAATCGTAAGTTTAGTAATCAGTATAAGGCTACAATTGGTGCGGATTTTCTTACC AAGGAAGTTCAATTTGAAGATAGGTTGTTCACATTGCAGGTGAGAGATACAAGAACATACTGCTTCTTTTTGGATTAAAC TGTGTACAGTCTTTTATATGTGCTCTGCAGTTATGATATAAATAACCTTGCCTCTCTGCTCTAAACTAAGCTATTATGTT GATCAATTTCATTATAACCTTGTATACAATCCAACTCAGTTCTCACACAGCTCACAATCTATTTTATTTTAGTTCTATAA AAATTGTTTTCTCAGATGCGCATTGTGATTCATTTTGCTGCGCAAATGAACATAGGTTGAGTGTCTTCTATTTCCTCACA AGTAATTGAGTTTCTTTCTATAATATTCTTAAGTTTATATTGACTTATATCTTCTCTACTTACTCTTATATTCATATTTT TCCTCGCAGTTCTTTTTGCTCTGCTTTACATCCTAGATTTTCTTGTAATTGGCAGCTCTGTGTATTGAAATTTCTCTTTA TCTCTAAATCTCATTTTGATGTGATTTTATAATGTATGAGGCCTTATGTCTGGTCGAGTGAAACGTTAGAATAATAAAAT ATGGAAATAGAAGAAAACATCCAGGTGGCTGTGTTGTAAAACTGATGATGATGGTCAATGTGCAAGATATAAGATGATGG TTGGGGCTATTGCACTTTCTGCTTGATAAACGATCGATGTTTGGTTGTGTTTTTTGGCATGATATTCACTGAATGGTTCT GATTTCTTCCATCATTTTGAAGTATATGAAAGGGATATTAAATATTTAAGATTGAGATGTTCTCACCATACATGCAGATT TGGGATACTGCTGGTCAAGAACGGTTTCAGTCTCTTGGTGTGGCTTTCTATCGGGGTGCGGACTGCTGTGTCCTTGTTTA TGATGTAAATGTCATGAAATCTTTTGACAACCTCAACCATTGGCGAGAAGAATTTCTTATCCAGGTATTACTATTGTTAT TATTTTTTTTTACCTTTGTTTGGCTATGTTGTATCTTTGTATCACCTTTATTAAAGAACAGTGAGAAATTCATGCAAATA TTTGATTTTCAGGCTAGTCCATCTGACCCTGAAAACTTCCCATTTGTTGTCTTGGGAAACAAAATAGATGTTGATGGTGG GAATAGCCGAGTTGTAAGCTACTTCTCTTCTCTTCTCATGGCATAATTGCTTATTGACCTTTATAAAACAATTCTGAGTT CAATTATGTGGTGAATCTGCTTTCTGCTGTCGTTTGTAAACATTGAATACGATATTGGAAAATATAATTTTTTTATTAAT ATGTGAAAAAGCCTCATTTAGAGTTTGGTTTAGGTTTACAAATACTGTGGGCCTGCCCTGTATGTTCACCCTGTGATGGA CGGTTAATTCTACATGTATGTATATGATTGAAAATCTCTTTTGTCTCAGATTTCTGAGAAGAAAGCAAAGGCATGGTGTG CTTCAAAGGGAAACATACCATACTTCGAGACCTCTGCAAAAGAAGGATTCAATGTTGAAGCTGCTTTCCAATGTATAGCA AAAAATGCACTCAAGAATGAACCAGAAGAAGAAATGTTAGTGTTCCTGAACTTTTTTGAGCTTTATTTATGCATGTTGTT GTTCATTAATGATTTACAGTTTCTAACTTTTAAAAGTTAAAAAGTGTGGAAGTTTATGCATGCTCATCACAAAGGTTAAG TGCTTTTGTTGACTGTATCAGGTATCTTCCTGACACAATCGATGTCGGTGGTGGTGGACGACAGCAAAGATCTACAGGCT GTGAATGTTAAGTAGACAGAGTTCTGTGGACCAGGTTTACTTGCTTGTTTCATGCCAACATACAAGTGCCCCCCTCATTA TTGATTATGAGCTAGCTTCTACTTTATTGACAATGTAAAACCAAGAACAAGTTACAAATTCCATTTTGTATCTCGCTAGT GGATTAGGTGGACATGTTGGTTATTTTTGTATTCATTCCTTTGCCTTTAACGTTTGTTACAAATCTTCCCCCGAATCAGG AAATGTATTGAAAAAAGTTGTGTGCGGTTATGGGTTATGACATTGATGTTCCTAGTTTAAGTATTGGCTTTTAAATATGT ATTCTATGTTATTGGTATTTTTCCCTCCCTTTTTCGAAGGTTTTCTATATTTGATTTTCAAATACAGCAGATGCCTAGCT GTTCAGGATCATTTTCCTCCATTTTAAAATACAGAAGTATATGGCAATTGATTTCCCTCAACACTTAGTTTTTAGGTCAT GAAAAAATATCATCAATCTATCACTGTGTCTGGTTTCAATTATCTGAGAGATAGCCCCAAAAGAATATTAGCTATACGTT TTCTACACTGTTTTTTAATGCACTTTTTTTAATGCACTGTTTTTTAATGCAAG
CDS sequence (LotjaGi3g1v0366600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCTCGCCGCCGCATGTTACTCAAGGTCATAATCCTCGGAGATAGCGGGGTTGGTAAAACATCCTTGATGAATCA GTATGTGAATCGTAAGTTTAGTAATCAGTATAAGGCTACAATTGGTGCGGATTTTCTTACCAAGGAAGTTCAATTTGAAG ATAGGTTGTTCACATTGCAGATTTGGGATACTGCTGGTCAAGAACGGTTTCAGTCTCTTGGTGTGGCTTTCTATCGGGGT GCGGACTGCTGTGTCCTTGTTTATGATGTAAATGTCATGAAATCTTTTGACAACCTCAACCATTGGCGAGAAGAATTTCT TATCCAGGCTAGTCCATCTGACCCTGAAAACTTCCCATTTGTTGTCTTGGGAAACAAAATAGATGTTGATGGTGGGAATA GCCGAGTTATTTCTGAGAAGAAAGCAAAGGCATGGTGTGCTTCAAAGGGAAACATACCATACTTCGAGACCTCTGCAAAA GAAGGATTCAATGTTGAAGCTGCTTTCCAATGTATAGCAAAAAATGCACTCAAGAATGAACCAGAAGAAGAAATGTATCT TCCTGACACAATCGATGTCGGTGGTGGTGGACGACAGCAAAGATCTACAGGCTGTGAATGTTAA
Protein sequence (LotjaGi3g1v0366600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG ADCCVLVYDVNVMKSFDNLNHWREEFLIQASPSDPENFPFVVLGNKIDVDGGNSRVISEKKAKAWCASKGNIPYFETSAK EGFNVEAAFQCIAKNALKNEPEEEMYLPDTIDVGGGGRQQRSTGCEC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 1 | 189 | 189 | 7.0E-66 | – | |
ProSiteProfiles | 4 | 207 | 204 | 31.923 | – | |
SUPERFAMILY | 5 | 186 | 182 | 1.17E-54 | ||
PANTHER | 6 | 206 | 201 | 2.8E-110 | – | |
PANTHER | 6 | 206 | 201 | 2.8E-110 | – | |
SMART | 6 | 179 | 174 | 1.8E-21 | – | |
PRINTS | 9 | 30 | 22 | 3.2E-39 | – | |
CDD | 9 | 182 | 174 | 9.21658E-134 | – | |
SMART | 9 | 179 | 171 | 3.3E-92 | – | |
Pfam | 10 | 177 | 168 | 8.4E-55 | ||
TIGRFAM | 10 | 172 | 163 | 8.9E-26 | ||
SMART | 11 | 179 | 169 | 8.8E-13 | – | |
SMART | 14 | 201 | 188 | 3.8E-5 | – | |
PRINTS | 32 | 48 | 17 | 3.2E-39 | – | |
PRINTS | 50 | 72 | 23 | 3.2E-39 | – | |
PRINTS | 116 | 129 | 14 | 3.2E-39 | – | |
PRINTS | 154 | 176 | 23 | 3.2E-39 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi3g1v0366600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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