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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0366600 |
| Transcript ID | LotjaGi3g1v0366600.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ras-like protein; TAIR: AT1G52280.1 RAB GTPase homolog G3D; Swiss-Prot: sp|O24461|RAB7_PRUAR Ras-related protein Rab7; TrEMBL-Plants: tr|A0A0B2SMG8|A0A0B2SMG8_GLYSO Ras-related protein Rab7; Found in the gene: LotjaGi3g1v0366600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:75279973..75281995) extracted from Lotus japonicus Gifu genome v1.2.
ATTTTGTCACATGGGCTAAATTCATGTCATACTAATTGTGTTTTCTTTTTCTTTTTTGGCAGGGTTGGTAAAACATCCTT GATGAATCAGTATGTCAGATATCTTTAATTTTTCTTTCAGGCAAAGTTTGGTGAATATTCTTTTATTTGATTTGTATTAT CATGATCATTATTTATTTTCTTTGCATCTAGGTATGTGAATCGTAAGTTTAGTAATCAGTATAAGGCTACAATTGGTGCG GATTTTCTTACCAAGGAAGTTCAATTTGAAGATAGGTTGTTCACATTGCAGGTGAGAGATACAAGAACATACTGCTTCTT TTTGGATTAAACTGTGTACAGTCTTTTATATGTGCTCTGCAGTTATGATATAAATAACCTTGCCTCTCTGCTCTAAACTA AGCTATTATGTTGATCAATTTCATTATAACCTTGTATACAATCCAACTCAGTTCTCACACAGCTCACAATCTATTTTATT TTAGTTCTATAAAAATTGTTTTCTCAGATGCGCATTGTGATTCATTTTGCTGCGCAAATGAACATAGGTTGAGTGTCTTC TATTTCCTCACAAGTAATTGAGTTTCTTTCTATAATATTCTTAAGTTTATATTGACTTATATCTTCTCTACTTACTCTTA TATTCATATTTTTCCTCGCAGTTCTTTTTGCTCTGCTTTACATCCTAGATTTTCTTGTAATTGGCAGCTCTGTGTATTGA AATTTCTCTTTATCTCTAAATCTCATTTTGATGTGATTTTATAATGTATGAGGCCTTATGTCTGGTCGAGTGAAACGTTA GAATAATAAAATATGGAAATAGAAGAAAACATCCAGGTGGCTGTGTTGTAAAACTGATGATGATGGTCAATGTGCAAGAT ATAAGATGATGGTTGGGGCTATTGCACTTTCTGCTTGATAAACGATCGATGTTTGGTTGTGTTTTTTGGCATGATATTCA CTGAATGGTTCTGATTTCTTCCATCATTTTGAAGTATATGAAAGGGATATTAAATATTTAAGATTGAGATGTTCTCACCA TACATGCAGATTTGGGATACTGCTGGTCAAGAACGGTTTCAGTCTCTTGGTGTGGCTTTCTATCGGGGTGCGGACTGCTG TGTCCTTGTTTATGATGTAAATGTCATGAAATCTTTTGACAACCTCAACCATTGGCGAGAAGAATTTCTTATCCAGGTAT TACTATTGTTATTATTTTTTTTTACCTTTGTTTGGCTATGTTGTATCTTTGTATCACCTTTATTAAAGAACAGTGAGAAA TTCATGCAAATATTTGATTTTCAGGCTAGTCCATCTGACCCTGAAAACTTCCCATTTGTTGTCTTGGGAAACAAAATAGA TGTTGATGGTGGGAATAGCCGAGTTGTAAGCTACTTCTCTTCTCTTCTCATGGCATAATTGCTTATTGACCTTTATAAAA CAATTCTGAGTTCAATTATGTGGTGAATCTGCTTTCTGCTGTCGTTTGTAAACATTGAATACGATATTGGAAAATATAAT TTTTTTATTAATATGTGAAAAAGCCTCATTTAGAGTTTGGTTTAGGTTTACAAATACTGTGGGCCTGCCCTGTATGTTCA CCCTGTGATGGACGGTTAATTCTACATGTATGTATATGATTGAAAATCTCTTTTGTCTCAGATTTCTGAGAAGAAAGCAA AGGCATGGTGTGCTTCAAAGGGAAACATACCATACTTCGAGACCTCTGCAAAAGAAGGATTCAATGTTGAAGCTGCTTTC CAATGTATAGCAAAAAATGCACTCAAGAATGAACCAGAAGAAGAAATGTTAGTGTTCCTGAACTTTTTTGAGCTTTATTT ATGCATGTTGTTGTTCATTAATGATTTACAGTTTCTAACTTTTAAAAGTTAAAAAGTGTGGAAGTTTATGCATGCTCATC ACAAAGGTTAAGTGCTTTTGTTGACTGTATCAGGTATCTTCCTGACACAATCGATGTCGGTGGTGGTGGACGACAGCAAA GATCTACAGGCTGTGAATGTTAA
CDS sequence (LotjaGi3g1v0366600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATCAGTATGTGAATCGTAAGTTTAGTAATCAGTATAAGGCTACAATTGGTGCGGATTTTCTTACCAAGGAAGTTCA ATTTGAAGATAGGTTGTTCACATTGCAGATTTGGGATACTGCTGGTCAAGAACGGTTTCAGTCTCTTGGTGTGGCTTTCT ATCGGGGTGCGGACTGCTGTGTCCTTGTTTATGATGTAAATGTCATGAAATCTTTTGACAACCTCAACCATTGGCGAGAA GAATTTCTTATCCAGGCTAGTCCATCTGACCCTGAAAACTTCCCATTTGTTGTCTTGGGAAACAAAATAGATGTTGATGG TGGGAATAGCCGAGTTATTTCTGAGAAGAAAGCAAAGGCATGGTGTGCTTCAAAGGGAAACATACCATACTTCGAGACCT CTGCAAAAGAAGGATTCAATGTTGAAGCTGCTTTCCAATGTATAGCAAAAAATGCACTCAAGAATGAACCAGAAGAAGAA ATGTATCTTCCTGACACAATCGATGTCGGTGGTGGTGGACGACAGCAAAGATCTACAGGCTGTGAATGTTAA
Protein sequence (LotjaGi3g1v0366600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNHWRE EFLIQASPSDPENFPFVVLGNKIDVDGGNSRVISEKKAKAWCASKGNIPYFETSAKEGFNVEAAFQCIAKNALKNEPEEE MYLPDTIDVGGGGRQQRSTGCEC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SMART | 1 | 155 | 155 | 1.6E-8 | – | |
| ProSiteProfiles | 1 | 183 | 183 | 28.032 | – | |
| SMART | 1 | 155 | 155 | 1.2E-10 | – | |
| SMART | 1 | 177 | 177 | 0.0081 | – | |
| PANTHER | 1 | 182 | 182 | 1.1E-98 | – | |
| CDD | 1 | 158 | 158 | 1.69766E-117 | – | |
| SUPERFAMILY | 1 | 162 | 162 | 4.86E-43 | ||
| Gene3D | 1 | 165 | 165 | 2.4E-54 | – | |
| PANTHER | 1 | 182 | 182 | 1.1E-98 | – | |
| SMART | 1 | 155 | 155 | 1.1E-70 | – | |
| Pfam | 2 | 153 | 152 | 5.1E-45 | ||
| TIGRFAM | 2 | 148 | 147 | 1.5E-17 | ||
| PRINTS | 8 | 24 | 17 | 3.8E-27 | – | |
| PRINTS | 26 | 48 | 23 | 3.8E-27 | – | |
| PRINTS | 92 | 105 | 14 | 3.8E-27 | – | |
| PRINTS | 130 | 152 | 23 | 3.8E-27 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi3g1v0366600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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