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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0368200 |
| Transcript ID | LotjaGi3g1v0368200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Aquaporin-like protein; TAIR: AT3G16240.1 delta tonoplast integral protein; Swiss-Prot: sp|Q41951|TIP21_ARATH Aquaporin TIP2-1; TrEMBL-Plants: tr|I3T438|I3T438_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0368200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:75457718..75459512) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGTGGTATAGCATTTGGACGCTTAGATGATTCTTTCAGTTTGGGCTCAATCAAGGCCTATATTGCTGAGTTCATCTC AACCTTGCTCTTTGTTTTTGCTGGTGTTGGTTCAGCAATAGCCTATGGTTAGTTTTCTCTGCTTTACAAGAGAATTCAAT AAAAATCTGTCTCAGTGCCTGTTTAGTTTCCGGTTTGCGTTGAAAACACATGTCCCAGCACATCAACAGAGAAGATTTTG CCACATTGGCTCAAACGTGGATCAGCATTGTGTTAAATAGAAATCCAAACATATTAATCAAACAAGCCTCTCCTCAATCA CTGCATGAGAAACCATAAAATATATAACCCTTAAATACAGTTGAGAAGTTAATAGAAGATTATGAATTATGAAACCATTT TGACTTCTGTATGTCTGGTTTTTTCTTTTTCTTTTTTATTTGTAGGTAAGGTGACATCAGATGCTGCTCTCGATCCAGCT GGGTTAGTAGCAATTGCTGTTTGTCATGCTTTTGCTCTATTTGTTGCTGTTTCTGTTGGTGCCAATATTTCTGGTGGCCA TGTCAACCCTGCTGTGACCTTTGGATTGGCTCTTGGTGGCCAGATCACCATCCTCACTGGTATCTTCTACTGGATTGCAC AGCTTCTTGGCTCCATAGTGGCATGTTTTCTACTCCACTATGTCACAGGAGGCTTGGTAAGTTTAAACCGGACGAGCATG TTTGGTTTCATGTTAAAACCTTCTAGAATCACTTCTTCCCCATATAAGCTACTTAGAGTAGCTTTTCCCATGATTAATTC TCTTCACAATGTGGAAACCTGCAGAATTTCCAAACACATAGTGTTGTTTGGATCGGCGTTATCAGAATTAATTTTGAATA AAATTGATTTTACTAATATTGAATATGATAGAGGTGATTTAAAGCGAGTTGAAAGTGATATGATTTATATTTGGATAAAT GAGTGAAAATTTTAACTTTTGTAGGAATAACCTGAAATCCAGTTGTAAAATTAAATCTCATAATTGATTATGTTCAACGC AGAAACTACTCTCTCTAAGCTTACTCCAGAACTGATTATGGGATCGGAATCAATTTCCAAAAACCGAAATGAGTCCTGAA CATCTATATTGTCATCCAGAAATTAATAACTTCAAACACACTATTACGAACTACCACATGGCAAATCTCTTTCTTGCACC AAAAGTTTCATGCATAACTATCCATACACAGTCACACTACTAATGGGACATGGGTATAATATATGGTTAAGAACTTAAGA TGGGGCATGATAGAAATATGTACATATGGTACCCTCCATATACCAATCCAAGAATAAAACTAAAGAATGTCATATCAAAA TCTTAAATCTTCAGTTCATTTTTGTTGAAATTATAAGCCAAACTAGTATTATTTTGTTGCCAGGAAACTCCCGTCCACGG TCTGGCCGCTGGAGTTGGAGCTTTTGAAGGAGTTGTCACTGAGATCATCATCACATTTGGGTTGGTCTACACGGTGTATG CCACAGCAGCTGACCCTAAGAAGGGCTCATTGGGCACCATTGCACCCATTGCCATTGGTTTCATTGTTGGTGCCAATATA TTGGCTGCAGGGCCATTTTCAGGCGGGTCGATGAACCCGGCTCGCTCCTTTGGCCCTGCAGTTGTTAGTGGCAACTTTCA TGACATCTGGATCTACTGGGTTGGACCTCTCATTGGTGGTGGTTTAGCTGGCCTCATCTATGGCAATGTGTTCATTCGCT CTCATGAGCATGCACCTCTTCCCAGTGAATTCTGA
CDS sequence (LotjaGi3g1v0368200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGGTATAGCATTTGGACGCTTAGATGATTCTTTCAGTTTGGGCTCAATCAAGGCCTATATTGCTGAGTTCATCTC AACCTTGCTCTTTGTTTTTGCTGGTGTTGGTTCAGCAATAGCCTATGGTAAGGTGACATCAGATGCTGCTCTCGATCCAG CTGGGTTAGTAGCAATTGCTGTTTGTCATGCTTTTGCTCTATTTGTTGCTGTTTCTGTTGGTGCCAATATTTCTGGTGGC CATGTCAACCCTGCTGTGACCTTTGGATTGGCTCTTGGTGGCCAGATCACCATCCTCACTGGTATCTTCTACTGGATTGC ACAGCTTCTTGGCTCCATAGAAACTCCCGTCCACGGTCTGGCCGCTGGAGTTGGAGCTTTTGAAGGAGTTGTCACTGAGA TCATCATCACATTTGGGTTGGTCTACACGGTGTATGCCACAGCAGCTGACCCTAAGAAGGGCTCATTGGGCACCATTGCA CCCATTGCCATTGGTTTCATTGTTGGTGCCAATATATTGGCTGCAGGGCCATTTTCAGGCGGGTCGATGAACCCGGCTCG CTCCTTTGGCCCTGCAGTTGTTAGTGGCAACTTTCATGACATCTGGATCTACTGGGTTGGACCTCTCATTGGTGGTGGTT TAGCTGGCCTCATCTATGGCAATGTGTTCATTCGCTCTCATGAGCATGCACCTCTTCCCAGTGAATTCTGA
Protein sequence (LotjaGi3g1v0368200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGGIAFGRLDDSFSLGSIKAYIAEFISTLLFVFAGVGSAIAYGKVTSDAALDPAGLVAIAVCHAFALFVAVSVGANISGG HVNPAVTFGLALGGQITILTGIFYWIAQLLGSIETPVHGLAAGVGAFEGVVTEIIITFGLVYTVYATAADPKKGSLGTIA PIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGNFHDIWIYWVGPLIGGGLAGLIYGNVFIRSHEHAPLPSEF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 236 | 236 | 2.0E-131 | – | |
| PANTHER | 1 | 236 | 236 | 2.0E-131 | ||
| Phobius | 1 | 20 | 20 | - | – | |
| Gene3D | 2 | 235 | 234 | 1.9E-81 | ||
| SUPERFAMILY | 14 | 231 | 218 | 1.02E-62 | ||
| Pfam | 15 | 113 | 99 | 3.5E-30 | ||
| PRINTS | 19 | 38 | 20 | 2.3E-51 | ||
| CDD | 19 | 222 | 204 | 3.32447E-59 | ||
| TMHMM | 21 | 43 | 23 | - | – | |
| Phobius | 21 | 42 | 22 | - | – | |
| Phobius | 43 | 53 | 11 | - | – | |
| TMHMM | 53 | 75 | 23 | - | – | |
| Phobius | 54 | 73 | 20 | - | – | |
| PRINTS | 63 | 87 | 25 | 2.3E-51 | ||
| Phobius | 74 | 84 | 11 | - | – | |
| ProSitePatterns | 81 | 89 | 9 | - | ||
| Phobius | 85 | 107 | 23 | - | – | |
| TMHMM | 87 | 109 | 23 | - | – | |
| PRINTS | 100 | 119 | 20 | 2.3E-51 | ||
| Phobius | 108 | 118 | 11 | - | – | |
| Phobius | 119 | 144 | 26 | - | – | |
| Pfam | 120 | 219 | 100 | 5.7E-38 | ||
| TMHMM | 124 | 146 | 23 | - | – | |
| PRINTS | 132 | 150 | 19 | 2.3E-51 | ||
| Phobius | 145 | 155 | 11 | - | – | |
| Phobius | 156 | 181 | 26 | - | – | |
| TMHMM | 159 | 181 | 23 | - | – | |
| PRINTS | 165 | 187 | 23 | 2.3E-51 | ||
| Phobius | 182 | 200 | 19 | - | – | |
| TMHMM | 201 | 223 | 23 | - | – | |
| Phobius | 201 | 224 | 24 | - | – | |
| PRINTS | 202 | 222 | 21 | 2.3E-51 | ||
| Phobius | 225 | 236 | 12 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Channel activity | Enables the energy-independent facilitated diffusion, mediated by passage of a solute through a transmembrane aqueous pore or channel. Stereospecificity is not exhibited but this transport may be specific for a particular molecular species or class of molecules. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi3g1v0368200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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