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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0368500 |
| Transcript ID | LotjaGi3g1v0368500.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane protein, putative; TAIR: AT1G52155.1 transmembrane protein; Swiss-Prot: sp|A6ZZS6|PTM1_YEAS7 Membrane protein PTM1; TrEMBL-Plants: tr|G7LFW9|G7LFW9_MEDTR Transmembrane protein, putative; Found in the gene: LotjaGi3g1v0368500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:75492489..75497794) extracted from Lotus japonicus Gifu genome v1.2.
CAAAGTGCCACGTTTCAGACGTGTGCAAAGCGCCAGCGTATAAAAAGGCGCACAACCCAACACAGCGACGGCAAAGAAAC AGTTAAAAGCTGAAATTTGAACTCGCCGGCAGCGAAATGGTGAACTCCGGCGACGGAGTAGACGAGTCGTACCGAGCACT TCCGTCGCTCTACTTGACCTTCTTGTCGATCTGGTTCCTCTCCGCTTGCTCCTGGACCGCCTACACCTACAAAACCCGCC ATTTTCAGGTTCCTTCTTAATCTTCTTCCTCACTCTCCGCTTTGTCAATCGTTGAGCGTTGTTTTCGATTTTTGGATGAT AAGAAATGAACGAGTGACTTGTGTAATCGTGTTGCTGAAATGAAATGTAACTGTGTTGTTGAGAACTGTTTTTGCAAGCT TTGGACTTAACTATTTCGTTATTCGAGTTTGATTTGTTGATTTTATTCAATATGCAATAACGTGAGAAAATGAAATTTCA TTGCCTTTTACATGTAATTTGCAACTGTTTCAGTAAAACTATGGAGAATTAGTTTTAGATCAAATATGTAAAGTTAATTG AAAGCTTTTTTTTGAAGTTTTTTTGTTTAATTGATTTATTTTGTGGTATTGTTTTGCTAGAGCAGTGGAATAATTTGCAG TGGGCACTTACGGTGGTTCCGTTGATTAAAGCATTGCAGCTCATGCTATCCTTCCTCTTCTGGTAGGTATTGGACTTCTT TTTTGGCTTGTTGAATGCTGTAATGGATTTCTAGAGTTGAAGGTGAAGATATGTATTTGGATTTTTATATTTATATAACT TTAAGATGGGATTATCTTTCGGTCAGTTCAACAACGAAGAGTAGGTAACTCGTGTCTCAATTCATAGTTCAGGAGACAAA ATTAAGTGTATAATTGGAGGCAAAGAAGGAGATCCCAAATTAAGTACATTCCAGCCAATTGAGAATCATAGCTTTTCTTT TTTCAAACATTTTATACCTCTCAACTTAACAAAAAAAGAAAAGAGTACCCTCCACGTAGCTAAAGTCTTTCTACTTAGAT GTTCATCCCTCCGTACTTTTCACTCATATCTTGGTTCTTACTTCGGATTCTTGAAAGTTGAGAAAATATACAACAGCAGT GTAATTTTCGGAATACTTGTATGGATATAAGGGCGTGGAAGTAGACAACTTTATTTGTTGAAAGCAAGACTATAGAGTAA TTGTAAGTTGTAACCGATGGATGGAAGATACTGGTGGGAAAGGCCAGACAATTGTGGTAAAATTGAGATGTAATAGATGA GGGTGTGCTACCCTTCTAATTTGCAATTCTGCATTTGAACTTACAAGTTGTTCAATTTATCTGGAAAAAAAAAACGTGTG GATTCATCCATGAGGACTGTAATTGATAGGGATATGGGACATTGCTCAAATTATTAAGTTGAATTTTGAAGTTTATTTGT AGAGTTGCGGTTTGTATCAGAGAATCCATTACATTATAGTGCAGTTTATTTTTAAAGTGGTAGTATATGAGGGCTGTTGT CATGGTTGCTCTAGATGTGTAAATGTTAGTTTGCAAATGATTCCAGGTGCATGTTTAGCGTGAGATTACACAAGGCTTGG CATGCTTGAAACTTGCTTGACAACACATCCTTGCAGCGTCAACTTTGTGTAACTGTATTTGTGGTCTGCAAAATTTACTT CATTCAGTCTTGTGACACCATTCTTGTAGGTATTCTTGCTTCAACTATCAGACATGCTCTTTGTGGATGTCATTTGGGGT GTATGTAACAGGGGTGCTATTTCAGACAGCAGCTTTTGTCTCCTTTTTGCTCATTTCTCATGGTTACTGCATCATGTGTG AGCGTCTTTCTTTAAGTGAACGCCGTTCCACTGCCGCACTTGCATGTGTCTTTTACTTGACTCTAGTTGGGTACAAGGCT TCTGTGCCATACTTCACCGTAAGTTTCTTAGCTGGTCCATATAATATGCAGATTAATTGGTAATACTACAAATAAATATA CATGGTTCTTTGATGCTAATTCGTAATTGACCAAATGTGCAGGTGCTTCTACTCCTAAATTATGTTATATCATTCTATAT AATATTCCACCATATATCTCAAAACCTGCTAGTGTTGCGAGAACAATTGAGCATTATAGTAAATGACGATGTTCAAGCAA TGCATGATGCCGTGTATAAGAAGTACATAATGTTCAAGTAAGTGCAACACATCTGGGAAGTGTATATGTGTAATTTCTTC CCCAATTTCGTAGACATGTGTTATTTCCATGTAAACAATAACTCATACTCAACCGCTAACATTCTTTGCTTTACTCTGTC CAGGAAATTTCAGGGAGCAATGCAGATGGTTGCTATGGCAGAAACTATGGTATTATATTTGAGTTTTGCTTTGTAAATTT TCATGAACAATGATATATAAATATTTGACTTTGACAAGCCCATTGTAGATATATATGAACATGGATGACTCCTCACAGAA TTACTGGCTTCGCTTATTGATCAGAGAATGGGTACAATTCTGCATATTTGGGTATATTGGGTATGCATATCTGCGCTCCC CTGCCAGAACACTTGAATTCTCTAAAATTAATAGAATTCCTTGACAGAAAACCACGCAATGGAAGAAAACTATTCATGAT TTTCCTCCAATTGTTTGTCCCTTTCATTTCTAACCTCAAATATTTCTTAATCTATTCCTTGCTGCAGATGGATTTTCAGA TCACAAGATTTGGCACCACACTTCTCTGTTATGCCAACCACAAAGTGTAAAGGCGAGACTCTGGTGCCTCCCATCTACAG CCTTGTAAGTTATCGATCTTTATATGTTGCAGAGGTCACGATGCTAATAAAATCTTTAATTTTAGTTGTCATGAGTTGTT GGAATGTTTTCAACAATATTGAACTCTAAACATTCAGTTATACTCGAAGATATCAGCTGTACGTAGCCTCTTTTAGGTTG GAGCTTCTACTTGTTTCTCTATTATGTCACACATTTTGAAAGACGAGAGATCTCAATTTGCAACTTTTTAGCTACTCTCA TATATAAGTTTAGACTATTAGGGTTCATTCCCATATTCAAGGCAGTAATTGAAGAATTACTCTAGATGTAGTTCATAGAA TAATATCCTGTTTTCTGACTACACTGAGCACCTTGGTGCAGGAAATGGACGCATCAACGTTTAAAGAATTTAGCAGTCAT GAATGGCACATTGGGGTGGTAAGTGTTATAAACCTGCTTCCATGTTTTTAGTTGGATAGCTTACTAACTAAATAGTGGTA TCACGTTACATTCTTAAAATATCATTCCAAGCAATGAATCCTCTACTAGGTCAAGTTTGCTTTATTTGAACGCATGAGCT TTTGGTGACTTTTGTTACTTCCTGCGAGTTTAATAACCATAAGATAGTGAGATATGATTAGATGTATTTTACTGTCAGTG TATACTAACTAAATTCATTCACTATTTATTATTTTGTACTGATACAATACAATCATTATGCAGTAATTCAAACAATTTTA AATCAAATTTTTATTTATTTGTACTTATACACTCATTATGAAGTTCAAATAATTCAAGTTATCTGATCTCATTTTTCTGT CTGTGTAGCCAACTTGTACTTTTCATGATGAAAGTTCCAAAAAAGATGTTCTTGTTATCATTCAGCATCCTCGAGCACAA AGGCTAAGAAAGCTCGATGCCTTCTCTCAAAGCGCTAACTGTTTGTAGTGTCAGATCTCAATACACATTCATCTTCATGC CAAATGTAACAAAGTCAGCTAAATGATCCAAGATACAAGCATTACTTGCTTATGCCTTTCTCTTGCAGCTAGCATGGGCA TGATAGTTTTATTTGTCTTTAATTATTAATTATTAATTACAGCAATTTTCTCAGTTTAGGAATCACGATGTAAGGGTAAA GCAGTGGGTTTTAGCTCATTAACCACAGTTTAGAGGTTAGAGGCAGCTGCAAATATGTATCAGTACATCATTAAAGTAGT ATCAAATGTGTATATATTCTTTTTGATTCCAGTGTTGGTTGCACTTAACGTTTTCAAGAAAATTCGTGTCAATGGGGTTT CAATTTCATTTGATACTAGTGTCTATGACACCATAACATGGAAAGTTGTAAATTTGTCTACATGGCCCAAGTTGGGGCCG GTCTATGTAGGACTTGTTTGTTTTTCAATGTGGGAGCCTCAAAGTTTCCATGAGAGAAACTATAAAATCTTAGTTTCACA AAAAAAGGTGCACCTTAATATGTATTACACTTTAGCTTATAAATTTATTAGAGATGTTTGGTATATATATCTCTTTTAAC TTATGGCTTATAACTTAAACTAATTGTATTTGGATGTCTTATCTAGCACTCTCTTTAGCCAAAAAATCAGCCACCACATT CCCCTATCACAGGGTGTGATGTAAAACCATAGACTTCGTCTTCTTAAGAAGACTAAGCAAAGGGATGGTGATGGAAGCAT ATTGACAAAACTTTGGGTAGGTGTTGGGGTTTTGGGCCCCCTTCCTATGTGAAGAAAGGCCCAAATATATAATTGTAAGC CCACTTTGTCTCACTTAAACAAGTGGAGAGGGGTCAGCTAGGGTTGAGAGAGAGGTCAAATTTGGCAAGAGAAGCAAAGA GAAAAGTGAGAGAGAAGAGAAGAAAAAGGATTTTCGCACAAAGTCTGAGCAGCGTTTTTAGATCTGCCGCCATGCCTTCG TTCACCGTCCGATCGGGCTGAAATTTGGACAGCAGGTTCGTGACTCGTGGTTCTTCAATCTGAACGGTGTGATCGGCAAG ATGATTCCTGTGTTGGGAGAAAACTGCGTCGGACAGTAGCTGCAAAATCTGGTTTTTCTGGTTTTCTTGGTTCTCTATTT CATACTTGTTGCTTAGTTGCTTGGCCATTGTTGTGCACGAATTGTGCTATGTATTAAGACTCTCTTGTAACCTGATTTGA TTATAGTGGAGCTCTATTACTGGCTTGGTCCCGTGGATGTTTTCCTTCTCACATTGAGAAGGTTTTTACCACGTTAAAAA TCTTGGTGTCTCTTTGTTGTGATTTTTAGTTGCTGCATTATTTGTTGTTGCTCCTCACAGATTCAGCAAGTTGGGGAAAT TATTATCCGCTGTGCATTGCTTTGTTAGAGTTGTTATTGTTATTTGTGTTGAATTTCCCATTAGTAGGTCCTTTGGAGGA GATGAAGCGCCAAAGTTGAATTCGTATGTACCATCACATGACAATCTCATGGTAACAGTATGTCATTTTCAAATTATGAC ATGCATTTATAATTTTCATACCAAAT
CDS sequence (LotjaGi3g1v0368500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGAACTCCGGCGACGGAGTAGACGAGTCGTACCGAGCACTTCCGTCGCTCTACTTGACCTTCTTGTCGATCTGGTT CCTCTCCGCTTGCTCCTGGACCGCCTACACCTACAAAACCCGCCATTTTCAGTGGAATAATTTGCAGTGGGCACTTACGG TGGTTCCGTTGATTAAAGCATTGCAGCTCATGCTATCCTTCCTCTTCTGGTATTCTTGCTTCAACTATCAGACATGCTCT TTGTGGATGTCATTTGGGGTGTATGTAACAGGGGTGCTATTTCAGACAGCAGCTTTTGTCTCCTTTTTGCTCATTTCTCA TGGTTACTGCATCATGTGTGAGCGTCTTTCTTTAAGTGAACGCCGTTCCACTGCCGCACTTGCATGTGTCTTTTACTTGA CTCTAGTTGGGTACAAGGCTTCTGTGCCATACTTCACCGTGCTTCTACTCCTAAATTATGTTATATCATTCTATATAATA TTCCACCATATATCTCAAAACCTGCTAGTGTTGCGAGAACAATTGAGCATTATAGTAAATGACGATGTTCAAGCAATGCA TGATGCCGTGTATAAGAAGTACATAATGTTCAAGAAATTTCAGGGAGCAATGCAGATGGTTGCTATGGCAGAAACTATGA TATATATGAACATGGATGACTCCTCACAGAATTACTGGCTTCGCTTATTGATCAGAGAATGGGTACAATTCTGCATATTT GGGTATATTGGATGGATTTTCAGATCACAAGATTTGGCACCACACTTCTCTGTTATGCCAACCACAAAGTGTAAAGGCGA GACTCTGGTGCCTCCCATCTACAGCCTTGAAATGGACGCATCAACGTTTAAAGAATTTAGCAGTCATGAATGGCACATTG GGGTGCCAACTTGTACTTTTCATGATGAAAGTTCCAAAAAAGATGTTCTTGTTATCATTCAGCATCCTCGAGCACAAAGG CTAAGAAAGCTCGATGCCTTCTCTCAAAGCGCTAACTGTTTGTAG
Protein sequence (LotjaGi3g1v0368500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVNSGDGVDESYRALPSLYLTFLSIWFLSACSWTAYTYKTRHFQWNNLQWALTVVPLIKALQLMLSFLFWYSCFNYQTCS LWMSFGVYVTGVLFQTAAFVSFLLISHGYCIMCERLSLSERRSTAALACVFYLTLVGYKASVPYFTVLLLLNYVISFYII FHHISQNLLVLREQLSIIVNDDVQAMHDAVYKKYIMFKKFQGAMQMVAMAETMIYMNMDDSSQNYWLRLLIREWVQFCIF GYIGWIFRSQDLAPHFSVMPTTKCKGETLVPPIYSLEMDASTFKEFSSHEWHIGVPTCTFHDESSKKDVLVIIQHPRAQR LRKLDAFSQSANCL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 17 | 17 | - | – | |
| PANTHER | 7 | 323 | 317 | 5.8E-153 | ||
| PANTHER | 7 | 323 | 317 | 5.8E-153 | – | |
| TMHMM | 15 | 37 | 23 | - | – | |
| Phobius | 18 | 38 | 21 | - | – | |
| Phobius | 39 | 49 | 11 | - | – | |
| Phobius | 50 | 72 | 23 | - | – | |
| TMHMM | 50 | 72 | 23 | - | – | |
| Phobius | 73 | 91 | 19 | - | – | |
| TMHMM | 82 | 104 | 23 | - | – | |
| Phobius | 92 | 111 | 20 | - | – | |
| Phobius | 112 | 122 | 11 | - | – | |
| Phobius | 123 | 138 | 16 | - | – | |
| TMHMM | 125 | 147 | 23 | - | – | |
| Phobius | 139 | 143 | 5 | - | – | |
| Phobius | 144 | 164 | 21 | - | – | |
| Phobius | 165 | 224 | 60 | - | – | |
| Phobius | 225 | 247 | 23 | - | – | |
| Phobius | 248 | 334 | 87 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi3g1v0368500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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