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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0371200 |
| Transcript ID | LotjaGi3g1v0371200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA polymerase II-associated factor 1 like; TAIR: AT1G79730.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|F4HQA1|PAF1_ARATH Protein PAF1 homolog; TrEMBL-Plants: tr|V7APN8|V7APN8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0371200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:76125886..76131548) extracted from Lotus japonicus Gifu genome v1.2.
CGACGCCGCCCTCCTCATAAGATTGATGGTGAGCACTACAGCTTCTCATATCTTTATTTCTAAAATAAAATCTAGAGATA AAAAACTATCCAAAAATTATCAAAGGATCACAAATTGATTTAACCCTCAACGTCAAAACCCTCCAAGGAGTGTGATTAGA TTACCCAACAAAGCAAAAAAGGAAAACAAGCCTCCATGAAATAAACAACACCAGCTGAATTCATTCATAAGCACAAAATC TCACTCTTCCTCTTCCTCCGCTCAACAATTCGCCTGAATTCTCATTCCGCCACCACAATCTTCCCCTCCGCCACCGTATT CCGATCCAAGATTCTATCCCCCCCCCCCCCAAACGCTGCAGTATCGACTACACTCCGATTGATGCAACAACACAGTCTGT GAGCTTGTTCGAGAACGAAAACCCAGTTCAATTTTGATCATTATCGTGATTCTAGGGTTTTGATTTCACCCTTTTTTGAA ATTCCATCCATTGATTTGGGTTTTGTGAGGAATGGCATCTTACAGGCCTTTCCCTCCGCCGTCGAGTCAAAACCCTATCT CAGCCCCACCACCACCGCAGCCACCGCAACAACGCGGCAATCATCAGGGCAATTGGGGTGGTGGCGGTGGTTGTTACGGT TACGCTCCTGGTGCTGCAGATCCTTCTACTTCTTCATTCCCCCAAATGCCTCCGAATTCCAATTATCACCACCATCAACA ACAGCAGCACCATCATGCTCCTCCGCCTAATTCCTATCACCACCTCTATGCATACCCACCGGCGCCACTTCCGCCGCCTC CTCCGCCACCACCTGAAACATCCTACCACCCACCACCGCCTCCTCCTCCTATGTATTACCCCCCTTCTAGTAATAGTCAA TACAATCACCAACAACCACCACCTCCTCCGCCGTTGTCGCCGGGTGCTTCTTCTGTCCCACCACCACCACCTCCTCCTGC CTCGCCGCCGCCTCCTCCTCCGAATAATGAAGAGAGGGCGTTTACTAAAGGCTCCTTGAAGGATCCTTCCACATCCGGCA GGCGCGAATACGAGCATTCGAATCATAAGCAGCACAGCAAGCCTCCTCCGGGTCCGGTGCATAAGGTGAGTGGGGCTGTC AGGAGGGCTGAGACTGATGAGGAGAAGAGGTTGAGGAAGAAGAGGGAGTATGAGAAGCAGAGGCAGGAAGAGAAGCATAG GCAGCAGCAGCAGTTGTTGAAGGAATCCCAGAACAATGTGTTGCAAAAGACTCAGATTTTGGCTTCTGGGAAGGGAGGGC ATGGCTCTTCTATTGCGGGGTCTCGAATGGGAGAAAGGAGAACTGCTCCTTTATTGAGTGGTGAGAGGGTTGAAAATAGG TTGAAAAAGCCTACCACTTTTTTGTGTAAGCTCAGGTGAGTGAGTTATGTTTGTCATTTGTGATAGCAGTACATGACTTG TTATTCTGAATCAGATTATGTTTTGATTGAGCTCTCTTTCATTATGTATTTTCAATTGAAGTTGCATTTTCAATTCTCTG TTATTCATGGATGGTGCATAATTTCATTTAGTGGTTTTGTAGTGTTTACTTCCAGTGCTGACACTTTCTTATGTGTATTC TCATTTAAGATTCCGAAATGAACTTCCAGATCCAAGTGCGCAACCTAAGCTTATGGCGTTCAAGAAAGATAAAGATCAGT ATGTAATCTTATTCTCACTTGTAAATTTATATGTGGCTACCAAACAACTATCTATCCAGTTGATGGGGTATTATTGATTT TTGGAAGTTATGCTATTGTTTGCGCTGCTAATAACTGTAAAGTTCTCCTTCATCGTGCTGGTAAGTGGTAAATGTTCAGG AGGATGGAGGAATTAAAGTCGAAAACTAATGCTTTGACAGGAGAGCTAGCAAACATATAATAACGGGTTGATACTTGATA GGACATGTATAGTTAAGATGTGTAGTTCTGGCATTTGATGTATTTGCCTGGTACACTGTACAGGTGACATGCCAAATGTG ATTCGTGACTATCTGATTGTAATGTATGTGATCACTGTAAAATGTCACATTTGTTAGTCTATCCACATTAACCAATCATG CAAAGATTCAATTCCAATGTGTCCCTATTAAAGACTCATATTCTTCCTTTCCATGTTTTCTCTTTACGAGAGAAGGGGGG GGGGGAGGCGGGTACAAGCATTGGTTACTCATTTGTTTAGGCAATGGGAAAACTGTAGAGAAGGTAAAAAAGATTGTTTT TCAATTGGACATGCTCATCTTCAGTTTTAGATGGTATCCCTGTGAATATAGTGCTTGTCTCTTGTCGGCGGAACATAACA AGAGTTTATGAGGATGGATTTTATTTTTGTAAAGCTTTTGAAGTAGAGGAGCTGCATTGATCACTGATTTGCATTTGGAT GCTTTAGTAGTATTTTGACTATGCTTTCGAAATTAAGTTTTCATGACTAGTAATTGTATGTGCATTTCATAGTAATTTTG TGATCATTGTCCAGATATGCAAAATATACAATCACATCTCTGGAGAAAATGTACAAACCTAAACTTTTTGTGGAGCCAGA TCTGGGGATACCTCTGGACCTGCTTGATCTCAGTGTTTACAAGTATTATCCCCTGTTCCTTCTGTAAATTTGAATACTTC AATGAGCAATGCTGAATAAAAAAAGTCTGATGAATCCTTTATACAGTCCTCCCAGTGTCAGACCACCTCTTGCTCCAGAA GATGAAGATTTATTAAGAGATGATGAAGTGATCACTCCAGTAAAAAAAGATGGCTTAAAGAGAAAAGACAGGCCTACTGA TAAAGGTGTAGCTTGGCTTGTTAAAACACAATATATATCTCCACTAAGCATGGATTCGGCGAAACAGGTATTAGGCATAT ATTTTGATATAAGGATCCATTACTCTCTCTACTAGTCTACTAGCAATAATATTAAATGTATTACTGTAGTCTTTAACTGA AAAACAAGCTAAGGAGCTGAGAGAGATGAAGGGGCGCGGCATTTTGGATAATCTTAACAGTAGGTATGTGTGTGCCACTT GTCCATCTAAAGTTAATTTTGGACAGATAGATTACTATGCGATAGTAATTAGAATCTTCTAACTATAATTGAGTTCTGTC TTTTAGGGAAAGACAAATCAGGGAAATTGAAGCATCATTTGAAGCAGCAAAGTCGCACCCTGTTCATGCAACCAACAAAG ATTTGTATCCTGTTGAGGTTTTGCCATTGCTGCCTGATATTGATAGGTATGGCACTATATATATATATATATATATATAT ATATATATATATATATATATATATATATATATATATATATATATATATATATATATTGTATCAGTGAAATTATTACTTAC CCTGGTGTATTCTTTTGATCAGCATTTTGTTTATGGTTTATAAAGCCTAATCTTGTGGTACTGAATGATGCAACTTCTTC CCAACATTCATAGTTTTTTCATATTAATTTTGCCTTCTCTTGTCATGCTTTGCAGGTATGAGGATCAGTTTGTTCTTGCT GCATTTGATAATGCTCCCACAGCTGATGCTGATATGTACACTAAATTAGACAAATCTGTTCGTGATGCCTATGAATCAAG GGTAAGCTATGTTACAAAATGACTGTTCCTTTCAGGGTTGTTTAAAAGCCAGGAAAATGCTGTGCAGGACATGTAAATAA CTCTATAGACAGTATCAAAAAGGAAATTTTTATTATTATAACTGTTTTACCTGGCTTGTTAATTTTCTCTTGTTGTTCTG ACTTAATATCACTTTTGAAATATGAAATTTACCTTATTTATTTGGTAGTGTAGTGATTTGCTCAATTGCTATTGGGTTTG TTTTTTCAAATCACTTTTTTTAACTTCCACTACTACAGTACAGTCATTAGTTGTTAATTTATTACCAGACTGGTGATTTT CCATTTTGTTGTGTTTGCATGTCACAACTTTTGAAATATAACAAGTGACTTTTCGTTTTTTGGCATACATGGCCATTTGT GGTCTGCATGTTGTTTGACTGACTCCTATCCATTTGTGGTCTTCAGGCAGTTATGAAAAGTTATGTTGCAACCGGCTCCG ATCCTGCAAATCCTGAGAAATTTTTGGCATACATGGCCCCAACACCTGGAGAGGTATGCATTAAGCATAAATTTGGATTT CGATTTTAAAACACTAGTTATTGTAAGAAATTATGTATTAACTTTTGAATTCATGTAAACTTTGTGATGGCAGCTGTCAA AGGATATATATGATGAAAATGAAGATGTTTCTTATTCTTGGGTCCGCGAATATCATTGGGATGTATGTTGTGATATTTTA AAAATTCTACACAAGTCATTAGCCCTGTTGAAACGATTCCCTTTTAACACTATTCTGACTTTTTTTCCATCTTAATAGGT TCGGGGTGATGATGCAGATGACCCTACAACATTCTTAGTTGCATTTGATGAGTTAGAAGCACGCTATGTGGTATTTCCCG GAATCAATATCTGCTCCCTTCTCAACTTACATGTTGGCATGTAGTTCCTTGGTTACTCAGTATCATTGTGTTAATTTGAT AGGTTTTTTTTTTTTTTATATGCAGCCTCTTCCAACTAAACTTGTTTTAAGAAAAAAGAGGGCTACAGAGGGAAGATCTG GTGATGAGGTTGAGCAATTTCCAATACCTTCAAAAGTGACCGTAAGGCGGAGATCAAGCGTTGCTGCAATTGAGCGGAAG GATTCTGGGGTATGCCAATGAATTTATCTTTAAGCTTGCCATTGCATTTTAATTAATAAGATAATTTCTTATATACCGTG ATTCTTTCAAGGTTTATACAAGTTCAAAGGGTAATTCATCGAGGAGAGGAGATTTGGAAATGGATGATGATGCTCTCGAA CACCAACATAGAGTTGCAGCACACCAGGACAATTATCAGTCGAGTGGAGCAGAAGATGACATGTCTGATTGATTCATTAA CCCAAATGCTGCTTCCTTAAAGAAAATTTGTTCAATTAGTTGGTGGTTGGATTGGCAGTAGATAGCTGTATTACTTGTGT TTCAATGAAGTTTAACTTAATTCGCGTACTTTCAGATTGTAGGTAGCTGTTAAATTGATATAGATTTTGTTTTCAATACC CCATTAAAATAGAAATTATTGAGAAATAATGAAATGTAAAAAGCATGTCAGACTCTACTTGGAATTTTATCATTGCTCCG GATGTTTTTAGTGCACATCTTTTGCGCTCCCATGAGGTTGTCCTCATTCCCCTTCTCTTTACCAGTAATGTTCTGGCCTT CTCTATCAAATATATTTTTTCGTTTGTGCTCTCACATTCCTAATTCTCTTTAGTGTATCGAGTGAGCCTGACCCCAAACC ATAATTGAGTTTACTGACAAGTTGCATGTAAAATTACTGTCACCTTTCATGATGGCCAAGCCATCATCATGCCATGAGAT GGTGACTGGTTTCTGGTAACATACTTGCTTAGTTACTTACAAAAACCACCACCATAAGTATATTTTAATTGAGAAATGAT ATTTCAGGAAAATGATATTGCTGACAATCAGATGCATGACATTCTTTTAAAGAATGTAATTACTATTACTTCGATAGCCG TTTGTTTTGAATTTTAAAAAATGATGACAAAATCACTTCAACAATGTAGAACTACAACTCCTC
CDS sequence (LotjaGi3g1v0371200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCTTACAGGCCTTTCCCTCCGCCGTCGAGTCAAAACCCTATCTCAGCCCCACCACCACCGCAGCCACCGCAACA ACGCGGCAATCATCAGGGCAATTGGGGTGGTGGCGGTGGTTGTTACGGTTACGCTCCTGGTGCTGCAGATCCTTCTACTT CTTCATTCCCCCAAATGCCTCCGAATTCCAATTATCACCACCATCAACAACAGCAGCACCATCATGCTCCTCCGCCTAAT TCCTATCACCACCTCTATGCATACCCACCGGCGCCACTTCCGCCGCCTCCTCCGCCACCACCTGAAACATCCTACCACCC ACCACCGCCTCCTCCTCCTATGTATTACCCCCCTTCTAGTAATAGTCAATACAATCACCAACAACCACCACCTCCTCCGC CGTTGTCGCCGGGTGCTTCTTCTGTCCCACCACCACCACCTCCTCCTGCCTCGCCGCCGCCTCCTCCTCCGAATAATGAA GAGAGGGCGTTTACTAAAGGCTCCTTGAAGGATCCTTCCACATCCGGCAGGCGCGAATACGAGCATTCGAATCATAAGCA GCACAGCAAGCCTCCTCCGGGTCCGGTGCATAAGGTGAGTGGGGCTGTCAGGAGGGCTGAGACTGATGAGGAGAAGAGGT TGAGGAAGAAGAGGGAGTATGAGAAGCAGAGGCAGGAAGAGAAGCATAGGCAGCAGCAGCAGTTGTTGAAGGAATCCCAG AACAATGTGTTGCAAAAGACTCAGATTTTGGCTTCTGGGAAGGGAGGGCATGGCTCTTCTATTGCGGGGTCTCGAATGGG AGAAAGGAGAACTGCTCCTTTATTGAGTGGTGAGAGGGTTGAAAATAGGTTGAAAAAGCCTACCACTTTTTTGTGTAAGC TCAGATTCCGAAATGAACTTCCAGATCCAAGTGCGCAACCTAAGCTTATGGCGTTCAAGAAAGATAAAGATCAATATGCA AAATATACAATCACATCTCTGGAGAAAATGTACAAACCTAAACTTTTTGTGGAGCCAGATCTGGGGATACCTCTGGACCT GCTTGATCTCAGTGTTTACAATCCTCCCAGTGTCAGACCACCTCTTGCTCCAGAAGATGAAGATTTATTAAGAGATGATG AAGTGATCACTCCAGTAAAAAAAGATGGCTTAAAGAGAAAAGACAGGCCTACTGATAAAGGTGTAGCTTGGCTTGTTAAA ACACAATATATATCTCCACTAAGCATGGATTCGGCGAAACAGTCTTTAACTGAAAAACAAGCTAAGGAGCTGAGAGAGAT GAAGGGGCGCGGCATTTTGGATAATCTTAACAGTAGGGAAAGACAAATCAGGGAAATTGAAGCATCATTTGAAGCAGCAA AGTCGCACCCTGTTCATGCAACCAACAAAGATTTGTATCCTGTTGAGGTTTTGCCATTGCTGCCTGATATTGATAGGTAT GAGGATCAGTTTGTTCTTGCTGCATTTGATAATGCTCCCACAGCTGATGCTGATATGTACACTAAATTAGACAAATCTGT TCGTGATGCCTATGAATCAAGGGCAGTTATGAAAAGTTATGTTGCAACCGGCTCCGATCCTGCAAATCCTGAGAAATTTT TGGCATACATGGCCCCAACACCTGGAGAGCTGTCAAAGGATATATATGATGAAAATGAAGATGTTTCTTATTCTTGGGTC CGCGAATATCATTGGGATGTTCGGGGTGATGATGCAGATGACCCTACAACATTCTTAGTTGCATTTGATGAGTTAGAAGC ACGCTATGTGCCTCTTCCAACTAAACTTGTTTTAAGAAAAAAGAGGGCTACAGAGGGAAGATCTGGTGATGAGGTTGAGC AATTTCCAATACCTTCAAAAGTGACCGTAAGGCGGAGATCAAGCGTTGCTGCAATTGAGCGGAAGGATTCTGGGGTTTAT ACAAGTTCAAAGGGTAATTCATCGAGGAGAGGAGATTTGGAAATGGATGATGATGCTCTCGAACACCAACATAGAGTTGC AGCACACCAGGACAATTATCAGTCGAGTGGAGCAGAAGATGACATGTCTGATTGA
Protein sequence (LotjaGi3g1v0371200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASYRPFPPPSSQNPISAPPPPQPPQQRGNHQGNWGGGGGCYGYAPGAADPSTSSFPQMPPNSNYHHHQQQQHHHAPPPN SYHHLYAYPPAPLPPPPPPPPETSYHPPPPPPPMYYPPSSNSQYNHQQPPPPPPLSPGASSVPPPPPPPASPPPPPPNNE ERAFTKGSLKDPSTSGRREYEHSNHKQHSKPPPGPVHKVSGAVRRAETDEEKRLRKKREYEKQRQEEKHRQQQQLLKESQ NNVLQKTQILASGKGGHGSSIAGSRMGERRTAPLLSGERVENRLKKPTTFLCKLRFRNELPDPSAQPKLMAFKKDKDQYA KYTITSLEKMYKPKLFVEPDLGIPLDLLDLSVYNPPSVRPPLAPEDEDLLRDDEVITPVKKDGLKRKDRPTDKGVAWLVK TQYISPLSMDSAKQSLTEKQAKELREMKGRGILDNLNSRERQIREIEASFEAAKSHPVHATNKDLYPVEVLPLLPDIDRY EDQFVLAAFDNAPTADADMYTKLDKSVRDAYESRAVMKSYVATGSDPANPEKFLAYMAPTPGELSKDIYDENEDVSYSWV REYHWDVRGDDADDPTTFLVAFDELEARYVPLPTKLVLRKKRATEGRSGDEVEQFPIPSKVTVRRRSSVAAIERKDSGVY TSSKGNSSRRGDLEMDDDALEHQHRVAAHQDNYQSSGAEDDMSD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 280 | 280 | - | – | |
| MobiDBLite | 8 | 27 | 20 | - | – | |
| MobiDBLite | 51 | 67 | 17 | - | – | |
| MobiDBLite | 83 | 160 | 78 | - | – | |
| SUPERFAMILY | 133 | 353 | 221 | 1.83E-5 | – | |
| PANTHER | 143 | 684 | 542 | 2.0E-191 | ||
| PANTHER | 143 | 684 | 542 | 2.0E-191 | – | |
| MobiDBLite | 164 | 188 | 25 | - | – | |
| MobiDBLite | 202 | 234 | 33 | - | – | |
| Coils | 203 | 242 | 40 | - | – | |
| MobiDBLite | 235 | 254 | 20 | - | – | |
| Pfam | 290 | 652 | 363 | 2.3E-54 | ||
| MobiDBLite | 626 | 684 | 59 | - | – | |
| MobiDBLite | 649 | 668 | 20 | - | – | |
| MobiDBLite | 669 | 684 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Transcription elongation from RNA polymerase II promoter | The extension of an RNA molecule after transcription initiation and promoter clearance at an RNA polymerase II promoter by the addition of ribonucleotides catalyzed by RNA polymerase II. | ||
| Biological process | Histone modification | The covalent alteration of one or more amino acid residues within a histone protein. | ||
| Cellular component | Cdc73/Paf1 complex | A multiprotein complex that associates with RNA polymerase II and general RNA polymerase II transcription factor complexes and may be involved in both transcriptional initiation and elongation. In Saccharomyces the complex contains Paf1p, Cdc73p, Ctr9p, Rtf1p, and Leo1p. |
Expression pattern of LotjaGi3g1v0371200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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