Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

IPR007133

Source: InterPro

Description

IPR007133 is a RNA polymerase II associated factor Paf1.

<p>In budding yeasts, Paf1 is part of the Paf1 complex, an RNA polymerase II-associated protein complex containing Paf1, Cdc73, Ctr9, Rtf1 and Leo1 [[cite:PUB00009800]]. Paf1 complex is involved in histone modifications, transcription elongation and other gene expression processes that include transcript site selection [[cite:PUB00074568]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006368
Biological process Transcription elongation from RNA polymerase II promoter The extension of an RNA molecule after transcription initiation and promoter clearance at an RNA polymerase II promoter by the addition of ribonucleotides catalyzed by RNA polymerase II.
Subterm of
Part of
GO:0016570
Biological process Histone modification The covalent alteration of one or more amino acid residues within a histone protein.
Subterm of
GO:0016593
Cellular component Cdc73/Paf1 complex A multiprotein complex that associates with RNA polymerase II and general RNA polymerase II transcription factor complexes and may be involved in both transcriptional initiation and elongation. In Saccharomyces the complex contains Paf1p, Cdc73p, Ctr9p, Rtf1p, and Leo1p.
Subterm of
Part of

Associated Lotus transcripts 3

Transcript Name Description Predicted domains Domain count
Lj3g3v2318150.1
– PREDICTED: RNA polymerase II-associated factor 1 homolog [Cicer arietinum] gi|502156093|ref|XP_004510311.1|
Domains
6
Lj3g3v2318150.2
– PREDICTED: RNA polymerase II-associated factor 1 homolog [Cicer arietinum] gi|502156093|ref|XP_004510311.1|
Domains
7
LotjaGi3g1v0371200.1
– RNA polymerase II-associated factor 1 like; TAIR: AT1G79730.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|F4HQA1|PAF1_ARATH Protein PAF1 homolog; TrEMBL-Plants: tr|V7APN8|V7APN8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0371200
Domains
7

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 33.33