Domain Predictions — View

Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

PF03985

Source: Pfam

Description

Paf1

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0006368 View details of GO:0006368 AmiGO InterPro QuickGO	Biological process	Transcription elongation from RNA polymerase II promoter	The extension of an RNA molecule after transcription initiation and promoter clearance at an RNA polymerase II promoter by the addition of ribonucleotides catalyzed by RNA polymerase II.	Subterm of GO:0006354 Part of GO:0006366
GO:0016570 View details of GO:0016570 AmiGO InterPro QuickGO	Biological process	Histone modification	The covalent alteration of one or more amino acid residues within a histone protein.	Subterm of GO:0006464 GO:0016569
GO:0016593 View details of GO:0016593 AmiGO InterPro QuickGO	Cellular component	Cdc73/Paf1 complex	A multiprotein complex that associates with RNA polymerase II and general RNA polymerase II transcription factor complexes and may be involved in both transcriptional initiation and elongation. In Saccharomyces the complex contains Paf1p, Cdc73p, Ctr9p, Rtf1p, and Leo1p.	Subterm of GO:0008023 Part of GO:0016591

Associated Lotus transcripts 3

Transcript	Name	Description	Predicted domains	Domain count
Lj3g3v2318150.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: RNA polymerase II-associated factor 1 homolog [Cicer arietinum] gi\|502156093\|ref\|XP_004510311.1\|	Domains Coil IPR007133 PF03985 PTHR23188 PTHR23188:SF12 mobidb-lite	6
Lj3g3v2318150.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: RNA polymerase II-associated factor 1 homolog [Cicer arietinum] gi\|502156093\|ref\|XP_004510311.1\|	Domains Coil IPR007133 PF03985 PTHR23188 PTHR23188:SF12 SSF101447 mobidb-lite	7
LotjaGi3g1v0371200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	RNA polymerase II-associated factor 1 like; TAIR: AT1G79730.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp\|F4HQA1\|PAF1_ARATH Protein PAF1 homolog; TrEMBL-Plants: tr\|V7APN8\|V7APN8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0371200	Domains Coil IPR007133 PF03985 PTHR23188 PTHR23188:SF12 SSF101447 mobidb-lite	7

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	33.33