Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi3g1v0371700.2

Overview

Field Value
Gene ID LotjaGi3g1v0371700
Transcript ID LotjaGi3g1v0371700.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Auxin-responsive protein; TAIR: AT3G16500.1 phytochrome-associated protein 1; Swiss-Prot: sp|Q8LAL2|IAA26_ARATH Auxin-responsive protein IAA26; TrEMBL-Plants: tr|A0A0R0IPS7|A0A0R0IPS7_SOYBN Auxin-induced protein; Found in the gene: LotjaGi3g1v0371700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:76174950..76178427) extracted from Lotus japonicus Gifu genome v1.2.

GTACCCTCCTTCTCCTTATAAAGAGGAAAGAATTTGAAAATCCTTCTACAGTTAATTTAAAAGACAATCAATTCTGGGAC GAAATTTTTGTGAGTAGCTTCAAGGTGTCAGAACTGATTCTGAAGAAAAAGAAGCTGATTCAGATATGCTATAAGTATGT AATAAAAGATATAATGCAAAGCTAGTCAACAATTTCATGCTACTATGTAGTTCCCTCTAGCCTCTACTTTGGCATTTGAA TGTGTCATCTTTTTATCTTGGTGGGGTGTCTCTTTAGATGTGATGAATTTTTATTTTTTGTGTTGAGCTGTTCAAGGTTT TTCACTGGCTGGTACCTAAAAAGGTTTATTGGTTCTTGTGGTAGGTGGTTCTTCAGATATCAAAGGTTCAAAGCTAATTT GTTTCAATCTAGAAGCTTGTAAGAAAGAAGCAGAACTGCAAGCAAGATGTGGAATGAAAGCCAAAATTCTTCAGAGGAGA GGAAACTGGAGCTTAGACTTGGTCCACCTGGTGAAGAGCCAATCAATGAAAACATGAAAAGTGTTAACAGAGAAAGAGGA GAATCACCACTCACTCTTGGTTACTCCACATGCCATCAACAACATAGTCCTCACCAGGCTAAAGCTAAAGCTTCATCATT TCTTCAGCTCTCATCAAGCCCACAGAACATGCCAGTGATTAGAAAGAACGTTTCACAACCCTGTGGTGAAGACTTGCTGA ATGCAGAGAAGAATACATTTTCAATATCTTCTGCAAATACAGCAGTGCTCAATAGGTCCCAGAAAAGGTACTTTTGCTTT TATCTTGTATCTCATATTTAGAACATTTTTTCAGATTATGAATCTTTTCATAATTAATTGCAATACTTTTCTGCATATTT GATTGAATAGCCATAACAATCCTCAAAAAGGGGAAACTTTTAGCTTTGAAACCTTGGACTCTTCACTGATTGTATTTGTT CTGTTATGCTTCCTTGCCATGTTTGATTCAGAGATGCCTGCATTTGATTGCTGATTATTTTTGTTGCTAATCATGTTCCT TCATTGTATTGTGTTTTATTATTTTCTTTGGTCCCTCCTAGTGAAAAGTTATTTTTGCTTGTTTGTTTTTTCAATAGAAC CAATTGTGAGTAGAAGTGCTAATAGCATGTTTGGATCAATTTCTCTTTTATAAATTTTGAAAATCAGAAGCTACTCTCCC CAGATTCTGGTTTTCGAATAGATTGTATGATTTCCAAACATGCACTAAAACTGTGAAATTGAGTGATTGTAAGCTTATGC TAATATGCTATTTGTCTTTTTTTTTTTTGTATAGAGCTTATTATTTTTACTGTTAATTTTGATGTCTAACTTTGCATATG GAACCACCTAAAACAGAACTGCTTCTGGTTCAGTAGTGGGTTGGCCTCCAATTCGTTCGTGCAGGAAGAACCTTGCAAGT GGAAGCTCTTCTAAGCCGCCTTCCGGGTCCCGACAACACCAGCATCATGTGGTTCCAGACAAGGTTGCTGGTAAGAAACC TGTTGAAACCTCTGATAAAGCTTTGTTTGTGAAGATCAATATGGATGGAGTTCCCATTGGGAGAAAAGTGGACATCAATG CTTATAACAGCTATGAAAAACTTTCCTATGCTGTTGATGAGCTATTTAGAGGCCTGCTTGCTGGTAATTTTCATGGCTTT TCATTTCAATTATCGCTAAGGTCTCACATTGACTAAAAATATGACTAAATAAGTTTATATATAGGGTAGACCAATCTTCA CCGCCACTAACTTTTGGAGTAGAATTAGACCTGATCCAAATTGTAATAAAATATTGAAACCTGTGTGGTCAATTTAATTA CACTGGGTGTTGACATAAACAAAGTGTAAAAAATTGTTTCTTTGAAGAAAGAAAGATAGTAACTCTTGAAAAACATTATC CTTTTGTTATCCTTTGACTAACTAGTAAGCATGTCATTAAATTCATGGCAAAATGTGAGCTAGCTTTGAAAAATAAACTT TTAAACTTGGTGTAAATGTCAACCTTGCTACAGTGCTATTTAGTATGCATTGGCTTATTTCATAGTCAATTTTTCACACC AATTTGATTTCTGTTATTCTTTTGTTCTGCTTATTAAATTCACTTCCAGAATTTGAAAATGAAACTTGATGCAGAGATGA ATTTATCTGATATTGTCTTTTCCCACTGCTGTTTTGCACCAAAAGATTCCTCAGCTGGTGGAATTCACAACAAGCTGCAG AAAGTGGAAGAGAAAGGCATAATGGGTTCTTTGATTGGAAGTGGGGAATATACTCTTGTGTATGAGGATAATGAAGGAGA CAGGATGCTTGTTCAGGATGTGCCATGGCAGTAAGAATCTTACCAATGTGAATCTGATGCATTTTTATCTTAGTCTATTC AATATTATATTCCATGACTATAGTTTGAGGGCCAATGCCAAATTAACCTTTGTTTTGAAAACTAAAATGGCGCTTAGTTG TTGGATTTCTTGTGCTTAGCAATTACTATTTAATCTGTGTGTACTATTCACCTTTTTTGCTGTGCCTGTGCATAAATACC AAGCACTACATCCCATGCAATCTCAGGTGAAAACACTTGAATGACTGACTGGTTTATCCTTGAAATACAAATAAACTGAG TGCATGTCCGGTCCGCTTATTTTTCCTGAGAATCAATTTTGGCATCTGAAAGCTACTTATAGAAGGGCCTCTGCAGAGTT GATTTTGGTTTTAGAATCAATGTCGAAAGATTTCCAAATGTGTACTTAAACCAAAATTAATTATGAGGAGAAGCTTCTGG TTGCCATAGGCTGATCCAAACATGCTTGAGCTTCTTCCAGAATCACTTTTCTCCTAACATGGAAACATGTAGATTTTTCA AACACACACAATAAATAACTCTTGCAATTGGTTTTTCCTGATGCTATTTTGTAATTCTTTCTTTTATGATTTGGTTATTG TTGCTTGAAAACTGTGATTGGCAGCTATGGTTATTATTATATAATTCCTTCTTACCAATGAATGTGAATGGTTGGCAACT TGGCAGCATATTCGTATCAACAGTGAAGAGGCTGCGGGTGTTGAAGAGTTCTGATCAATGATTGAAGAAAGGATCATGTT CTCTTTTGGTAGTAAACAAAGAGTAGATACACCACCACTTGACTCGGCAATGAAAAATGAAGGATATGGGGAATTAAAGA GTTGACATTTTGGTTCTTTTCTGTATTGAAGATTAAGGAATGAAATGTTCAACTTACAAGAGGTTAAAGCATCTCGAATG CTAGATTATTAGTTCTTAACACTATTTATGTAGCTCATACTCCCACATGTGCTTAAGTAACTTTTACCGATTTTGCTTCA ATCACGGGTTCTTAGTTCTTAATTCTTAGCACTATTCATTTGGTCTCACCAATCACATTATGTATATTTTTTTATTTTCG TAAAGCAATAAAACAAAATTCATAAAGTAATAAAGCAA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0371700.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTGGAATGAAAGCCAAAATTCTTCAGAGGAGAGGAAACTGGAGCTTAGACTTGGTCCACCTGGTGAAGAGCCAATCAA TGAAAACATGAAAAGTGTTAACAGAGAAAGAGGAGAATCACCACTCACTCTTGGTTACTCCACATGCCATCAACAACATA GTCCTCACCAGGCTAAAGCTAAAGCTTCATCATTTCTTCAGCTCTCATCAAGCCCACAGAACATGCCAGTGATTAGAAAG AACGTTTCACAACCCTGTGGTGAAGACTTGCTGAATGCAGAGAAGAATACATTTTCAATATCTTCTGCAAATACAGCAGT GCTCAATAGGTCCCAGAAAAGAACTGCTTCTGGTTCAGTAGTGGGTTGGCCTCCAATTCGTTCGTGCAGGAAGAACCTTG CAAGTGGAAGCTCTTCTAAGCCGCCTTCCGGGTCCCGACAACACCAGCATCATGTGGTTCCAGACAAGGTTGCTGGTAAG AAACCTGTTGAAACCTCTGATAAAGCTTTGTTTGTGAAGATCAATATGGATGGAGTTCCCATTGGGAGAAAAGTGGACAT CAATGCTTATAACAGCTATGAAAAACTTTCCTATGCTGTTGATGAGCTATTTAGAGGCCTGCTTGCTGATTCCTCAGCTG GTGGAATTCACAACAAGCTGCAGAAAGTGGAAGAGAAAGGCATAATGGGTTCTTTGATTGGAAGTGGGGAATATACTCTT GTGTATGAGGATAATGAAGGAGACAGGATGCTTGTTCAGGATGTGCCATGGCACATATTCGTATCAACAGTGAAGAGGCT GCGGGTGTTGAAGAGTTCTGATCAATGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0371700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MWNESQNSSEERKLELRLGPPGEEPINENMKSVNRERGESPLTLGYSTCHQQHSPHQAKAKASSFLQLSSSPQNMPVIRK NVSQPCGEDLLNAEKNTFSISSANTAVLNRSQKRTASGSVVGWPPIRSCRKNLASGSSSKPPSGSRQHQHHVVPDKVAGK KPVETSDKALFVKINMDGVPIGRKVDINAYNSYEKLSYAVDELFRGLLADSSAGGIHNKLQKVEEKGIMGSLIGSGEYTL VYEDNEGDRMLVQDVPWHIFVSTVKRLRVLKSSDQ
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 62 62 - –
PANTHER
PTHR31734:SF127
2 274 273 8.3E-92 –
PANTHER
PTHR31734
2 274 273 8.3E-92
IPR003311
Pfam
PF02309
14 274 261 3.7E-64
IPR033389
MobiDBLite
mobidb-lite
44 62 19 - –
MobiDBLite
mobidb-lite
131 159 29 - –
MobiDBLite
mobidb-lite
131 146 16 - –
Gene3D
G3DSA:3.10.20.90
163 275 113 9.0E-36 –
SUPERFAMILY
SSF54277
166 269 104 4.12E-14 –
ProSiteProfiles
PS51745
169 275 107 21.563
IPR000270

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0371700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…