Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0379700 |
| Transcript ID | LotjaGi3g1v0379700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glycosyl hydrolase family 5 protein; TAIR: AT1G13130.1 Cellulase (glycosyl hydrolase family 5) protein; Swiss-Prot: sp|P23548|GUN_PAEPO Endoglucanase; TrEMBL-Plants: tr|A0A072TZ08|A0A072TZ08_MEDTR Hydrolyzing O-glycosyl compounds hydrolase; Found in the gene: LotjaGi3g1v0379700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:77240915..77243285) extracted from Lotus japonicus Gifu genome v1.2.
CCAACTTGAAAATTCTATTTCCCCTTATCTTGTCAAGATGTTAGGAAAAACTTCATCACAATGCTTGTTTCTTGTTCTCC TTGTTTCCATAGTAGCATCACATTCCAATGCTAACCCTCTATCAACACAAGGTAGATGGATCATAGATGATTCCACAGGA CAAAGAGCCAAACTTGTGTGTGGCAATTGGGCTGGTCACCTTCAACCAATGATCCCTGAGGGTCTTGACAGAAGGCCATT GAAGGAGCTTGTTTCTGAGCTTGTCAAACACAATTTCACTTGTGTTCGCCTCACCTATGCAATTTACATGTGGACGCGCT ATGGCGATCACATTGTGAATGATACCTTAAACACTTTTGATGTGCCTGAGGTGGTGACTGGCATAGCCAAGAACAACCCT TCTGTGTTGAAAATGACTCACATTCAGGCCTTTGAAGCTGTGGTTCTTGAGCTTGGGGCTCAAAATGTGAAGGTTTTGCT TGATAACCATGTCAGTGAGCCTAAGTGGTGCTGTGGTGATGATGATGAAAATGGGTTCTTTCATGACAGACATTTTGATC CTGAGGAATGGGTGCAGGGCCTTACTCTGGCAGCCAAGTACTTTGCAAGAAATAAAGCTGTAAGTATTATATTGCCAAAT TCTAGCCACTGCAAGTATTTGATCAGCATTTGTCACAATTGGTTTTGGATAAATAGATTCTGGTAAAATTGACTATAGTT GACTTGATTGTGAAGTGATTTATGTTCGTATCCATTTATGAAAAAAAATGGTTTCTATATGGTAATGTTATAAAGTCTAG TTGTAAAATCTCAAAATTGATTATGTTAAACACATAGTGCATGTATGGATACTCCATGATTTTGCCTCATTGTAGTCCAG AATTGATTTTGAGACCAAAATCAATTTTCCAGTATTATTCACAAACATCTATACTGTCATCCAAAATTGGTTTTCCCTCT AACAAAATTGATTCATCCATGACTTGGATTGGTTTTTTTCCTCCTAATAGGTCGTGGCAATGAGCTTGAGGAATGAATTG CATGGTCCACGCCAAAATGAGAATGATTGGTACAGGTACATGAGCCAAGGAGCACTAGCCATCCATAGGGCAAACCAAAA TGTGCTTGTGGTTATATCAGGTTTAAACTATGACACTGAATTGCAGTTCTTAAGGAAGAAACCATTGATGATAGACTTGG GTAACAAAATGGTTTTTGAGACACATTTGTATTCATGGTCTGGAATTGGAACACTCAAATTGAAAGAGATTTGGTCTAAG CAACCATTGAACAGGATATGTTCCCAGAGCATTGAGGGTTTAGACCAAAGAGCTGGGTTCCTTACCAGTGGTAAGATTGC AGCCCCTTTAATCTTCACTGAGTTTGGGTTTGACCAGTCAGGGTCTACAGTGGAAGACAACAGGTTCTTGACATGCATTC AAACTTATCTTGTTGGAAGGGACATGGATTGGGGTTTGTGGGCATTTCATGGTGGCTATTACTTGAGGGAGGACAAAGTT CAACTTGATGAGTCATTTGGTGTAATGGATGCCACTTGGCACAACCTGAGGTACTCAAATTTCACTGACAAATTCCAACT TTTGCAAAGGAAGAATCAAGGTAAGTAGTCTGTTGAGTTATTTAATCAAACTTTTTGCAAGCATGTGCAGAAAATCAAAT GATTTCAATATCCATTTGCTTTAAACTAGTGTTTTTTTTTATGCAGATCCTACTTCAAAAGTCCCTGAATCATATATCTT GTACCACCCACTTTCTGGTCAATGTGTCCAAGTGAATCACAAGAGTGAACTTGAAATTGGTAGCTGTGAGAACCAAAACA GATGGATTTATGGTGGAGATGGGTCTCAGGTCCTTTTGCATGGCAATAACAAGAAGTGCTTAAGTGCTGCTGGTGAGGGG AAACCAGTTATTGTTTCTGATGATTGCCAGGGCAAAAACAGCTCTTGGAAATCTGTGTCACTTTCTAAATTTCATTTGGC TACAATGGATCAAGATAAGGAACAACTTTGCTTGCAGAAGGATTCCAGTTCATCCAGTGTTGTGACTTCAAAATGTATCT GCGTAGAAGATGATTCTCTATGTCTGGATGATCCCCAAAGCCAGTGGTTCCAGTTTGTTGCCACCAATGTGTAATTTTGG TTATTAACTAGGTGTCTGATGATTAGTATTGCAGAAAATAAAATGTTGAATTTTTTTTTGTTGAATTGAATTTTCACCAT AGAGCTTTTAGTGATGTGTTCAGGTTTGTAAATCTAATCAGATGATAAATAATAATTTTGAGGATTTTTTTTTCTTTCCT ATTGAATGTTATAATAGAAAGAAACGTTTTCAGGATGATAGAGATAGATAG
CDS sequence (LotjaGi3g1v0379700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTAGGAAAAACTTCATCACAATGCTTGTTTCTTGTTCTCCTTGTTTCCATAGTAGCATCACATTCCAATGCTAACCC TCTATCAACACAAGGTAGATGGATCATAGATGATTCCACAGGACAAAGAGCCAAACTTGTGTGTGGCAATTGGGCTGGTC ACCTTCAACCAATGATCCCTGAGGGTCTTGACAGAAGGCCATTGAAGGAGCTTGTTTCTGAGCTTGTCAAACACAATTTC ACTTGTGTTCGCCTCACCTATGCAATTTACATGTGGACGCGCTATGGCGATCACATTGTGAATGATACCTTAAACACTTT TGATGTGCCTGAGGTGGTGACTGGCATAGCCAAGAACAACCCTTCTGTGTTGAAAATGACTCACATTCAGGCCTTTGAAG CTGTGGTTCTTGAGCTTGGGGCTCAAAATGTGAAGGTTTTGCTTGATAACCATGTCAGTGAGCCTAAGTGGTGCTGTGGT GATGATGATGAAAATGGGTTCTTTCATGACAGACATTTTGATCCTGAGGAATGGGTGCAGGGCCTTACTCTGGCAGCCAA GTACTTTGCAAGAAATAAAGCTGTCGTGGCAATGAGCTTGAGGAATGAATTGCATGGTCCACGCCAAAATGAGAATGATT GGTACAGGTACATGAGCCAAGGAGCACTAGCCATCCATAGGGCAAACCAAAATGTGCTTGTGGTTATATCAGGTTTAAAC TATGACACTGAATTGCAGTTCTTAAGGAAGAAACCATTGATGATAGACTTGGGTAACAAAATGGTTTTTGAGACACATTT GTATTCATGGTCTGGAATTGGAACACTCAAATTGAAAGAGATTTGGTCTAAGCAACCATTGAACAGGATATGTTCCCAGA GCATTGAGGGTTTAGACCAAAGAGCTGGGTTCCTTACCAGTGGTAAGATTGCAGCCCCTTTAATCTTCACTGAGTTTGGG TTTGACCAGTCAGGGTCTACAGTGGAAGACAACAGGTTCTTGACATGCATTCAAACTTATCTTGTTGGAAGGGACATGGA TTGGGGTTTGTGGGCATTTCATGGTGGCTATTACTTGAGGGAGGACAAAGTTCAACTTGATGAGTCATTTGGTGTAATGG ATGCCACTTGGCACAACCTGAGGTACTCAAATTTCACTGACAAATTCCAACTTTTGCAAAGGAAGAATCAAGATCCTACT TCAAAAGTCCCTGAATCATATATCTTGTACCACCCACTTTCTGGTCAATGTGTCCAAGTGAATCACAAGAGTGAACTTGA AATTGGTAGCTGTGAGAACCAAAACAGATGGATTTATGGTGGAGATGGGTCTCAGGTCCTTTTGCATGGCAATAACAAGA AGTGCTTAAGTGCTGCTGGTGAGGGGAAACCAGTTATTGTTTCTGATGATTGCCAGGGCAAAAACAGCTCTTGGAAATCT GTGTCACTTTCTAAATTTCATTTGGCTACAATGGATCAAGATAAGGAACAACTTTGCTTGCAGAAGGATTCCAGTTCATC CAGTGTTGTGACTTCAAAATGTATCTGCGTAGAAGATGATTCTCTATGTCTGGATGATCCCCAAAGCCAGTGGTTCCAGT TTGTTGCCACCAATGTGTAA
Protein sequence (LotjaGi3g1v0379700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLGKTSSQCLFLVLLVSIVASHSNANPLSTQGRWIIDDSTGQRAKLVCGNWAGHLQPMIPEGLDRRPLKELVSELVKHNF TCVRLTYAIYMWTRYGDHIVNDTLNTFDVPEVVTGIAKNNPSVLKMTHIQAFEAVVLELGAQNVKVLLDNHVSEPKWCCG DDDENGFFHDRHFDPEEWVQGLTLAAKYFARNKAVVAMSLRNELHGPRQNENDWYRYMSQGALAIHRANQNVLVVISGLN YDTELQFLRKKPLMIDLGNKMVFETHLYSWSGIGTLKLKEIWSKQPLNRICSQSIEGLDQRAGFLTSGKIAAPLIFTEFG FDQSGSTVEDNRFLTCIQTYLVGRDMDWGLWAFHGGYYLREDKVQLDESFGVMDATWHNLRYSNFTDKFQLLQRKNQDPT SKVPESYILYHPLSGQCVQVNHKSELEIGSCENQNRWIYGGDGSQVLLHGNNKKCLSAAGEGKPVIVSDDCQGKNSSWKS VSLSKFHLATMDQDKEQLCLQKDSSSSSVVTSKCICVEDDSLCLDDPQSQWFQFVATNV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 25 | 25 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 8 | 8 | - | – | |
| SignalP_EUK | 1 | 25 | 25 | - | – | |
| PANTHER | 5 | 539 | 535 | 0.0 | – | |
| PANTHER | 5 | 539 | 535 | 0.0 | – | |
| Phobius | 9 | 20 | 12 | - | – | |
| Phobius | 21 | 25 | 5 | - | – | |
| Gene3D | 24 | 392 | 369 | 6.5E-67 | – | |
| SUPERFAMILY | 24 | 380 | 357 | 9.65E-48 | ||
| Phobius | 26 | 539 | 514 | - | – | |
| Pfam | 91 | 352 | 262 | 1.4E-18 | ||
| Gene3D | 393 | 489 | 97 | 2.7E-6 | – | |
| SUPERFAMILY | 403 | 533 | 131 | 3.06E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi3g1v0379700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…