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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0380600 |
| Transcript ID | LotjaGi3g1v0380600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MYB-related transcription factor; TAIR: AT3G61250.1 myb domain protein 17; Swiss-Prot: sp|P80073|MYB2_PHYPA Myb-related protein Pp2; TrEMBL-Plants: tr|A0A072TN47|A0A072TN47_MEDTR Myb transcription factor MIXTA-like protein; Found in the gene: LotjaGi3g1v0380600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:77320337..77324393) extracted from Lotus japonicus Gifu genome v1.2.
AAATGATGTGACATCGTCTGATTTTTTAAATTTAAGGTCCATTCCTTTTCACAACAAGTGTGTGTATTTTGAAAATACAA GTGGATTCACGTTTACTAGGCCCACATCAAGTTGAAGCAACAAATAGTTGCTTTTGAAAAATAGGATCCACGACTACCAC ACCTAGAATTGAAATCAAACATACTGCTAAAAGGGAAATGAAATCATTTTGACTCACATTTACAATATGCAATTTCTTGC ATGTTCGGATATACGGAGAAAAACCACGGTAAGGACAACATCATGGATGGGCAACCTCAAAGGTAAGAGATGTTGCTTTT GTCCATTGTGATTTTAGTTTATTATATTTTTTCACCATATATCTAAACATGTATGTATTTACTAGAATTAATTTTGTCCG GAATCAATTATGCAAACTCTTTTCCATTGTTTGTGTAACTTTCTCTCTCAACCATGACTCAACTTCTAAATGCTACTGTC TACATTTAATGCACAAAGCCAGCTTGAAACTCGCTTAAAAGTTACTACTGTCCTTGCAACCCCGAATCAATTAATAAGGT CTCCTAAAATAGCCTCGGACTCAGATAAAGATCACAAACACTTTTCTTAACGTCTAAAATCCTTCCCTATTTATGCCATA CTCACTCTGAGGCTTCAAGTGTTCCAGGGGGTCTCTTCAATATGTGCTAGAAATATGCAAGGTGATTGTTCTAAAGGTGT GGAACTTAGCAACTTGTTCTGCACTTTCAGTTTGTGATCATCTTTACTTTGTGTTGTTGAGAACTTGAGAAGGAATGGGA AGGAAACCTTGTTGTGATGACAAGATTGGGTTGAAGAGAGGTCCTTGGACTTCTGAAGAGGATGAGGCTCTTGTCAATTT TATCAAGAAAAATGGTGGTCATGGAAGCTGGCGTTCTCTCCCTAAGTTAGCAGGTTTTGATGCTCTTTATCTTTTCCCTT GCTTGTGGTCCATTAATCCATGTTGTGGTTTGAAAAGAAAAATTTTAAGAATCACTTTTCTCTCTTTGAAACCAGAGTTT CCCTCCTTTTGTTTTCACCCAGAAAGCTCTTAAATGTTACCTTTGAAGCTACATTTCCATTGACATGAATCCTATATTTT AACTATAGCCTTTTTTAGCTTGCTAGAAAGTTTGCTATTTTACTTAGAGCTACTATTCTATGATATTATTGGCTATAATG CTTGTCTTCAATATCTTGGATGATTTTGTGTTTGTACTCTTACCTACCAAGTACCAAGTTATCAAAACAATAGTTTGTAC CCTGTTTCATGGAACTTTGTTGCTTTAAAAACACATGCTGTTTAACAACACTTACGGGTGTTTGGATAGTGATCAAGTTA TTTAAGTGAAATGTGAACGAACTTTTTATCTCGAAATGAGTGGTAATGTGTGTTTGCACTGATCTAGACGACTATCTAAA CATAGCCTTAACCTAGTAAAGAACTCTTTTAACTCCATTCTTCAATTCCTCCTTTTCAAGTTCCTAAGTTAAAATGCAAG AATATGAAAAGGGCAGTGATTTGAGGTACAAGAAAAACTTGTTGGATTTTTGGATTCCAGTGCAATAGAACGGACTTTCA TTTCAATACATTAAAAGAGTTACATTCATTTTTTGTCTCGAAGTGAGTGCTAACGCCTGTTTGCACTAGTGTCAACGGAT ATCCAAACCTAACTTTTCTCGCTAACATAGAGCATGTTATCCCTATTACAACACCGTTTGGATCAGTAGCAAAATGCATT TATTGAAACTTATCTATTAAAAGAAACACTAAATAAGCTACAATAAATGTTCTCTAACACAAGGTTATATTTTTCTGTTG CTCTCCCCTTGTTCTGTTTATACTTTACCTTCAATTTCATTAGGATATGTTGCAGCTAAGCTTGCTAAGTGATAAAATCA CTCATCCATTTGGAGATTTTTCTTCACTTATAGATTTTGTTATGCATTTCCCTTAAATTATTGTGAAACAACCAAAGAAT AAGTGATAATATAACTTGCCTTCCACACATTTGTTTCAGATGATTATAAGATTTTTGCTTTCCCTTTCAGGCCTTCTTCG TTGTGGTAAGAGTTGCAGGCTAAGATGGACAAACTACCTCAGACCTGATATTAAGCGTGGCCCCTTTACACCTGAGGAAG AAAAACTAGTCATACAGCTTCATGCCATCCTTGGAAATAGGTACTTAATTGAAATGCTTTTTCGACTTTACACTTTGCTA GTACTAAGAGGCCACTTTAGAGGGGTCTAGTTCCTTTCTCTTAACACATGACTCTCAAACCCATTTTATTATTTGTGAAA ATGGAGTCCTAAACTCAATCAACAATTGCAAGTTTTGATCTTTGGTGTTTAGCACTTATTTACATAGACAGAAACATGGT GCAAGCAAATGGTAAATTCCTATGCCTGATCATTAGCTTCCTTTGGTGAAAATCTTCCTTTTTGATAGAAATCAGACTTA AAATTTGATAAGTATATATTTTATTGGTCAAATCAGTCTATAAATAACCTATGAAGAAGTATTTCCTTGATTAAGTTAAT TATTGAAGTCCCTGGACACTAGAATGAATTTGACAGAAAAAAATACATGTTTACATAGATGATAATTGTATCTTCTGTGG ATTATGCATGTTTGGATCAACTTTTATTTTCCTTATAATCATTTATGGCATCTAGATACTACTCACAAAGTGCTTTGGAA ACCTTCTATAATTGATTCTGAACCCAGAATCAATTATAAGGGTATCTGTGATTCTGAGTTTCAAATTTGATTCTGAAAGG ATAATTCACTATACTCTTTCTGGACCACATGTTTAAATGACAGATCTTTTGGCCCCCCTCTCCTAATGAACCTAAGATAT GTCAGATGTTACTGCATTAATATTAATATCTGTTACATAACTTGCATCATGTCATGTCCTTTTCTTCAAAGCTATTTCAA CAAATGAAAACAATTTATAGGTGGGCTGCAATTGCCTCTCAGCTTCCAGGAAGAACAGACAATGAGATCAAAAATTTATG GAACACACACCTGAAGAAACGTCTCATATCCATGGGAATCGACCCACAAACCCACGAGCCAGTCGCCTCTTCAACTTACC CGATCGACAAGTCACACGCGTCAACCGCCACGCGCCACATGGCTCAGTGGGAGAGTGCAAGGCTTGAAGCTGAGGCCAGG CTCTCAAGAGAGTCATCTTTGTTCAGCAACAACACCTCCAACAAAACTAATTCTGACTATTTCCTCCGCATGTGGAACTC TGAAGTTGGACAATCTTTTCGCGCCAAGAACAAATCAGATGATGATAGCAAAGCTAGGTGCCAGAGTCCCATGTCCCTAG TTGGATCCTCAACCCCAGAAAGCAATGTGAAGGAAGATTTCGAGTGGAAATTCTCTGATTCATGTGGTGGAATTGTGGCT GATTCAAGTTCTGATGACCTTGAAGACTCTTCTGACACTGCATTGCAGCTCTTGTTGGACTTTCCTATATACAATGACAT GAACTTCTTAGAATGAAACTCCTAACTAGTTATAAGCAGTTAGAACCCCTTTAGTGGTTGCATCATGTTGGCTAATTTTG TAGACTAATTAATAGCATGTTTGGATTAGCTTCTCTTTTCTAGGAATCAATTCTGTCACCTAGAAGCTACTAACAAAAGC TTCTCGGAATTGATTTTGACTTTTTGAATTTATTGTAGAAAGATTTTCAAACATGGAGTAAATCGTGTTTCTATGTCAGC CGTTGGACAAGTATGAAAAGATGACCTAGTGATTAGCTGAATATAATGGTTAGTTATTTAGCACTATTGACATTTAACTT GTAAGGCATATCAGCACCACTAAGAGCATCTCCAATGGTAGGAACTTATTTTGGGACTTAACTCAATTTTTGTGGGCCCA AATTGCCACATAGGATTTAAGACACCCATAAGGTCTTCATGCATATTTCACTCTAGTGGTTGGGATCTTATTTTACTTTT GACTGGACCCACAGTACCCAATATATTTATATTATTTATTTTCCTCCCTAATTTTCA
CDS sequence (LotjaGi3g1v0380600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAGGAAACCTTGTTGTGATGACAAGATTGGGTTGAAGAGAGGTCCTTGGACTTCTGAAGAGGATGAGGCTCTTGT CAATTTTATCAAGAAAAATGGTGGTCATGGAAGCTGGCGTTCTCTCCCTAAGTTAGCAGGCCTTCTTCGTTGTGGTAAGA GTTGCAGGCTAAGATGGACAAACTACCTCAGACCTGATATTAAGCGTGGCCCCTTTACACCTGAGGAAGAAAAACTAGTC ATACAGCTTCATGCCATCCTTGGAAATAGGTGGGCTGCAATTGCCTCTCAGCTTCCAGGAAGAACAGACAATGAGATCAA AAATTTATGGAACACACACCTGAAGAAACGTCTCATATCCATGGGAATCGACCCACAAACCCACGAGCCAGTCGCCTCTT CAACTTACCCGATCGACAAGTCACACGCGTCAACCGCCACGCGCCACATGGCTCAGTGGGAGAGTGCAAGGCTTGAAGCT GAGGCCAGGCTCTCAAGAGAGTCATCTTTGTTCAGCAACAACACCTCCAACAAAACTAATTCTGACTATTTCCTCCGCAT GTGGAACTCTGAAGTTGGACAATCTTTTCGCGCCAAGAACAAATCAGATGATGATAGCAAAGCTAGGTGCCAGAGTCCCA TGTCCCTAGTTGGATCCTCAACCCCAGAAAGCAATGTGAAGGAAGATTTCGAGTGGAAATTCTCTGATTCATGTGGTGGA ATTGTGGCTGATTCAAGTTCTGATGACCTTGAAGACTCTTCTGACACTGCATTGCAGCTCTTGTTGGACTTTCCTATATA CAATGACATGAACTTCTTAGAATGA
Protein sequence (LotjaGi3g1v0380600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRKPCCDDKIGLKRGPWTSEEDEALVNFIKKNGGHGSWRSLPKLAGLLRCGKSCRLRWTNYLRPDIKRGPFTPEEEKLV IQLHAILGNRWAAIASQLPGRTDNEIKNLWNTHLKKRLISMGIDPQTHEPVASSTYPIDKSHASTATRHMAQWESARLEA EARLSRESSLFSNNTSNKTNSDYFLRMWNSEVGQSFRAKNKSDDDSKARCQSPMSLVGSSTPESNVKEDFEWKFSDSCGG IVADSSSDDLEDSSDTALQLLLDFPIYNDMNFLE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 220 | 215 | 2.6E-106 | – | |
| PANTHER | 6 | 220 | 215 | 2.6E-106 | ||
| ProSiteProfiles | 10 | 63 | 54 | 15.243 | ||
| Gene3D | 12 | 69 | 58 | 2.9E-17 | – | |
| SUPERFAMILY | 12 | 110 | 99 | 6.24E-29 | ||
| SMART | 14 | 65 | 52 | 1.5E-11 | ||
| Pfam | 15 | 63 | 49 | 7.7E-13 | ||
| CDD | 17 | 63 | 47 | 1.3234E-8 | ||
| ProSiteProfiles | 64 | 118 | 55 | 26.1 | ||
| SMART | 68 | 116 | 49 | 7.3E-16 | ||
| Pfam | 69 | 114 | 46 | 3.7E-15 | ||
| CDD | 71 | 114 | 44 | 6.94634E-12 | ||
| Gene3D | 71 | 118 | 48 | 8.2E-21 | – | |
| MobiDBLite | 197 | 223 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi3g1v0380600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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