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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0382700 |
| Transcript ID | LotjaGi3g1v0382700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectin lyase-like superfamily protein, putative; TAIR: AT1G78400.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q6H9K0|PGLR2_PLAAC Exopolygalacturonase; TrEMBL-Plants: tr|A0A072TPY4|A0A072TPY4_MEDTR Polygalacturonase/glycoside hydrolase family protein; Found in the gene: LotjaGi3g1v0382700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:77671642..77674415) extracted from Lotus japonicus Gifu genome v1.2.
GACAGAACCATCGTTAAAAAAACATGGGTGTGAAATATTTGCTTGCGTTGTGCTCACTAGTTTGGATTGCAGAGGCACAA GTAGTCAAGGTTTTCAATGTGGAAAAATATGGTGCAGTTGCAGATGCCAAGACTGATAACTCTGTGGTAAAAATGTTCAT ACCTCCCATTCTTATTTTATTTAGGGACTATCTGAATTAATGTTCGCAGAATTGATTTTGGTAGAACTGATTCTAGTAGA ATTGGTATTGAAAGTAACTTGATTTAAGTCTGCATACACTTATCTGAAAAGTGATTTCTTAAGAGTATTTTGTTTGAATA ACTTTGATTAGAATTGTTTTTGACTGTGTAATATCCAATATGGATATGTGCATTATGATCAATATAAACAAACATCAAAA ACTGATTTCACTTTTTTGAGAATTGATTTTACTCGCCTTTCTCTATAATTGATTGATTTTGAGTCAATAATTGATTATGA TAGATAGTAACGAGACATGTAAAAATTATTTCTGGACCTTGTTTTGTTTGTTTTGTGCTCCAAAATCAACTATGACTATG AGGTTGCCCACACACTCGGAAGCACACACTTAGCAGTGTGTTTATTTATGATGTATTCAACTTTTGTAAAGGCATTTCTG AAAGCATGGAATGAGGCATGCAAATGGAATGGCAATGCAATGGTTTTGATCCCAAAAGGAACCTACATGCTCAACGAAGT CATGTTTGAAGGTCCATGCAATGGTTGGACAAATTTTAAAATAAGAGGAGTTTTGAAGGCTTCAACTGATCTATCTTCAT ACAAAACTGAGAACTGGATAAATTTTAGATATGTCAACAATTTGATTGTAAATGGAGGTGGCGCATTGGATGGTCAAGGA TCTTCAGCTTGGACTCAGAATAACTGCCGCAATAATCCAAATTGTCACGCTCTTCCTACGGTAAGTTCATTGTTTTACAA AAATTCAGTTTTTTCTCTCTCAATTGATCTTACTAAAAAGTTAATTTTCATCACATTCACAATCCACTCATAATCAATTT ATACATTCAAAAGCTATTCACATAATCAATTGTAATTGTAGAAAGATTTCTAAATACGCTATCCGTAGTATCTTAGTTTT CTCACTTTGTCCCTTACTATGGTTAGTTCAATGTGCTCATCGGCACCTAACCACCTAACCGTGAGATGTGGATCAGACAT TAGTTTGAGAGTTTGACTTCATCACCAATGTTTGAAACAAAACTTCGCCTCATGAGGATAGATGAGGCAATTCAAGTGAG ACACAATGTAGATCCAACTTTCTATTAACTCGTGAGATATGGACGGTCTGGCGGGACCACTATGACTAATCTCTTCTTAA GAACTCATACATGCTCATTCTTTTATTATAATGGTTTTATTTATCATATAGTCTTTTTTTAATTAAGATTCTTAGCTTGA CTTGTTAAAATAACATCTTTCTTTGTGGATGATACATTTGATCAGACAATGAAATTTGACTTCATCACCAATAGCAAAGT CCATCGCCTGCATTCTATTAACAGCAAACAAAACCATTTTATGCTGTTTGCATGTGAGAATATGACACTCACAAGACTCA CTTTATCAGCTCCTGCTGATAGCCCCAACACAGATGGCATCAAAATAGGAGAATCAAATGGGGTGAACATCACAAGTGTG AACATCGGCACCGGTGATGACTGCATTGCTCTTATCTCCGGCGCGAAGAAGGTTCGGATTATGGATGTGTTTTGTGGCCC TGGTCATGGAATCAGTGTGGGAAGCCTTGGTAAGAATGACGGGGAAAAAGATGTAGAAGACATTGTTGTGAAGAATTGCA CCTTCAGTGGTACTGATAATGGTCTTAGAATCAAAACATGGGCTTCTTCTTTGAGCAAAACTTTGAAGGCCTCTAATTTT GTCTATGAAGATATTGTCATGGATAATGTGGAGAATCCCATTATCATTGATCAAGAATATTGTCCATATCCTCCTTGCAA AACCCAGGTTTGTACATCTTCACATTATTTTGAATTATTGGCCCGATTTGTCGTTTTTCGTGCACTTAATAGCATGTTTG GATTGACGATCGACACACAATTCAAAACAGGACAACTCAAAAGTTACACAATGTGATTTTTCCCTAGAATTGATTGTGGA ATTTCCAACTACATAACCAAACACGCTATAATTAGTTTATTTGTTAAGAGGGAAAGTATCACAATTTTTTTTTTGGAAGG ACACTAATCTTTTGTAATGAAGAATTTGATTTGTTTCTTTAATTAGGTGGAAGAGATTTTATATATTGTACAAGCTGATC CAAATATGACGTCGGTGTTCTGAAAAAAACTGCCAATAATTTTGTTGTAGGTTGTTTCAAATGTACAGATCAGCAATGTG AAGTATACAAATATTAGAGGAAGCAGCATGACTGAAATTGCAGCCAATTTTAAGTGTAGTAGGAATAAGCCATGCCAAAA CATAACAACGGAGAGCATTCGTTTGACGAGATCTGGTGGCAAAGGAGGAATAAGCAATTCATGTAATAATGTCAATGGTG CTTCTTATGGCCAACAGATTCCCCCTTCCTGCTTGTAGTGACCAATTTCATCTTAGAATTGAAATTCTCTCCTTTCCTTG TTTGTATTTTTTGCAATCTTCTTATTAACTATTTCCATGTGCAAAAGGAATGTGTTGCTTTATTGTCCTTGAAACAAGGA TATGTTTCATACGAATCAGAAGTATTAGAGATTTAACAAATACTAAAAATATCC
CDS sequence (LotjaGi3g1v0382700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGTGAAATATTTGCTTGCGTTGTGCTCACTAGTTTGGATTGCAGAGGCACAAGTAGTCAAGGTTTTCAATGTGGA AAAATATGGTGCAGTTGCAGATGCCAAGACTGATAACTCTGTGGCATTTCTGAAAGCATGGAATGAGGCATGCAAATGGA ATGGCAATGCAATGGTTTTGATCCCAAAAGGAACCTACATGCTCAACGAAGTCATGTTTGAAGGTCCATGCAATGGTTGG ACAAATTTTAAAATAAGAGGAGTTTTGAAGGCTTCAACTGATCTATCTTCATACAAAACTGAGAACTGGATAAATTTTAG ATATGTCAACAATTTGATTGTAAATGGAGGTGGCGCATTGGATGGTCAAGGATCTTCAGCTTGGACTCAGAATAACTGCC GCAATAATCCAAATTGTCACGCTCTTCCTACGACAATGAAATTTGACTTCATCACCAATAGCAAAGTCCATCGCCTGCAT TCTATTAACAGCAAACAAAACCATTTTATGCTGTTTGCATGTGAGAATATGACACTCACAAGACTCACTTTATCAGCTCC TGCTGATAGCCCCAACACAGATGGCATCAAAATAGGAGAATCAAATGGGGTGAACATCACAAGTGTGAACATCGGCACCG GTGATGACTGCATTGCTCTTATCTCCGGCGCGAAGAAGGTTCGGATTATGGATGTGTTTTGTGGCCCTGGTCATGGAATC AGTGTGGGAAGCCTTGGTAAGAATGACGGGGAAAAAGATGTAGAAGACATTGTTGTGAAGAATTGCACCTTCAGTGGTAC TGATAATGGTCTTAGAATCAAAACATGGGCTTCTTCTTTGAGCAAAACTTTGAAGGCCTCTAATTTTGTCTATGAAGATA TTGTCATGGATAATGTGGAGAATCCCATTATCATTGATCAAGAATATTGTCCATATCCTCCTTGCAAAACCCAGGTTGTT TCAAATGTACAGATCAGCAATGTGAAGTATACAAATATTAGAGGAAGCAGCATGACTGAAATTGCAGCCAATTTTAAGTG TAGTAGGAATAAGCCATGCCAAAACATAACAACGGAGAGCATTCGTTTGACGAGATCTGGTGGCAAAGGAGGAATAAGCA ATTCATGTAATAATGTCAATGGTGCTTCTTATGGCCAACAGATTCCCCCTTCCTGCTTGTAG
Protein sequence (LotjaGi3g1v0382700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGVKYLLALCSLVWIAEAQVVKVFNVEKYGAVADAKTDNSVAFLKAWNEACKWNGNAMVLIPKGTYMLNEVMFEGPCNGW TNFKIRGVLKASTDLSSYKTENWINFRYVNNLIVNGGGALDGQGSSAWTQNNCRNNPNCHALPTTMKFDFITNSKVHRLH SINSKQNHFMLFACENMTLTRLTLSAPADSPNTDGIKIGESNGVNITSVNIGTGDDCIALISGAKKVRIMDVFCGPGHGI SVGSLGKNDGEKDVEDIVVKNCTFSGTDNGLRIKTWASSLSKTLKASNFVYEDIVMDNVENPIIIDQEYCPYPPCKTQVV SNVQISNVKYTNIRGSSMTEIAANFKCSRNKPCQNITTESIRLTRSGGKGGISNSCNNVNGASYGQQIPPSCL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 1 | 18 | 18 | - | – | |
| SignalP_EUK | 1 | 18 | 18 | - | – | |
| Phobius | 6 | 13 | 8 | - | – | |
| SUPERFAMILY | 10 | 393 | 384 | 2.29E-112 | ||
| Gene3D | 10 | 390 | 381 | 7.0E-112 | ||
| Phobius | 14 | 18 | 5 | - | – | |
| PANTHER | 18 | 383 | 366 | 4.0E-147 | – | |
| PANTHER | 18 | 383 | 366 | 4.0E-147 | – | |
| Phobius | 19 | 393 | 375 | - | – | |
| Pfam | 51 | 380 | 330 | 3.2E-95 | ||
| SMART | 174 | 200 | 27 | 1200.0 | ||
| SMART | 201 | 222 | 22 | 10000.0 | ||
| SMART | 224 | 244 | 21 | 9500.0 | ||
| ProSitePatterns | 231 | 244 | 14 | - | ||
| SMART | 254 | 275 | 22 | 1.2 | ||
| SMART | 320 | 365 | 46 | 9100.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi3g1v0382700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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