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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0384700 |
| Transcript ID | LotjaGi3g1v0384700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | AT-rich interactive domain protein; TAIR: AT2G46040.1 ARID/BRIGHT AND ELM2 DNA-binding domain-containing protein; Swiss-Prot: sp|Q84JT7|ARID1_ARATH AT-rich interactive domain-containing protein 1; TrEMBL-Plants: tr|A0A0B2SPI1|A0A0B2SPI1_GLYSO AT-rich interactive domain-containing protein 1; Found in the gene: LotjaGi3g1v0384700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:77957860..77962279) extracted from Lotus japonicus Gifu genome v1.2.
CACCATTTTGTGAGTTTTATCAAAATGGATGATCTCTTCTAAATTCTCTCTCAATTCTCAAATCAATTTTTGATAATTGA GAAAAAAGAAAAAGAAAAGACACATATTGCATATTGCAAGGGCAAAAGGTCAAGCAAGTCACAACTCAACCCCATCATAG GGGTCCCTTATCTCTCTCTCACCCCCCATAAAAAAAATCTGGTATGTCTTTCTCCCTTCTCTCTTCTTTTATTTGTTTTT ACTTCCAATCAAAAATTGAGATTTTGAAGAAGGGTCTGCCTCTGTTGAAACTTGAATTTTTAGCCCCTCCATCTCTCTCT CTCCCCAATCTCTCTCTCTCTCTCTAACGTCATTGTAGAGAGAGAAAAGCGCGGGAAAAGTTTTTCATAGAACACGCTTC GAAAAACCCTAGCCAGTGCTAGATCCTCATCTTCACTCCGCCAAAATTGATTTTTGAAAAACACCCAAAATTTCAATCGA TGTCAATTTCATTCCATTGATTCCACTACTCTCAATTTGTCGCAATTTTTTTTAAGTTTCAGAAAAGGGGTTGATGTATT TTTAATTATTTTTTGTTGCAAAAATGGATGATTTGGAGCTTGGTTGCTTGTTTCTAGGGTTTGGATTCGGAATCCATGAC GGGGCGGTCGCTGCTCGACGGTGGGGGAACAGTGAAAGGTAGCGGCGGCGGCGGCGGTGGTGGCGGTGGGACTCCGCGTC GTTTTGAGGAGCTTTTGGGTGAGTTCTTACAGGCTCTGAATCTGTTGCGTCCTTATCCTCCAATGCTGGGTGATGGGAAG AAGGTGGATTTGTACAAGCTGTACATGGTGGTGAAGGGGAAAGGTGGGTTTGAGGCTGTGACCAATGGGAAGCTTTGGGA TTTGGTTGGGGAGGAGTCTGGGTGTGGTGTGAGGGTTGGTCCTACTGTGAAACTGTTTTATGGTAAATACTTGAGTCCTT TGGATACATGGGGGAAGAAATTTGGTGATAGTAAGGTGGTTCCTGAGTGTGTTTTGGTGGGTGATAGGGATAGGTTTGGT AGGTGTTTGATGGAGTTGAAGGCTGAGGTGAGAGGGATGCTAGATGGCCGTGCTGCTGCGGATGAGGTAGATGGGGAGGA GGTCAAGTTGTGTGGGCTGATGGATGAGTCTGTTCTTGGGAATTTGTGTGAGGGCAATGATCAAATGGGAGTGTTGGAAG GGTTTGATGGAGGGAAAATGTCTGCTGAGCCAGAAATCGATGCATCTGATGCCGTGAACAGCAGCTTGCCTGGATTGTTG AGTGAAGGTGAGAAGTGTGATGATGGTGTTGTGGTATTGGCTTCATCTGGTGGTGATAGCGAGAAGTTTGGCTGTAAGAG GAAGAGGCAGTCTATGCTTGATTGGCTGAGATGGCTTGCTGGTGTTGCGAAGAATCCTTATGATCCGGCAGTTGGTGCGG TGCCTGAAAAGTCAAAGTGGAATTCTTACAGTAATCAGGAGTTCTGGAAGCAGGTTTTGTTGTTTCGAGAGGCTGTATTT TTCAAAAAAGTGTTCGAGTCGAGCAGCGAGCAACAGACTTGGCAGGTAATCTGAAAATTTAAGCTATTAATTGAAGATAT TTAGGCTTAAATTGATTTAGTAAATGTACGTGTTGCTACTGCATGCCTGAAAATTAATAGACTCATAAGCAGTAAGTCTC ATAAAAGATTTTTCTTTTAATATTCATATTTTTCATTCTGTTTATCTTCTGCGCAGTTAAACTTATCTTTGCATTTACAC ACCACATAATTACTCATTTTATTCAATTGTATTTGTGCTTGAGTGTGTAGTGATCATTGGATTCACTTGTTACTCTGGAA TGCGGTTTCTGTTTTATCCCCAACTTTTAATGCCAACTTTTGCTGCTTCATTACTCTATTAAATGGTTTCCTAAGGAAAA TCAATTTTATTCATATTGTTGATCTTTCTTTTTGTCTGTTAGCTACTGCATAGTGCACTGTTCTATTAATTAAGTTGAGC TTAAATTCTTACTCATTTTGTTCAAGTGTATTTGTGCTTGAGTGTGTAGTGAATCTTTCTTTTTGTCTGTTAGCTACTAG CTACTGCATAGTGCTCACTTCTATTAATTAAGTCGAGTTTAAATTCTTACTCATCTTATTCAAGTGTATTTGTGCTTGAG TGTGTAGTGATCATTGGTTGCTCTTGTTACCCTGGAATGCTGCTTCTATTTTATCCCCAACTTTTAATGCCAACTTTTGC TTCTTCATTACTCTATCAAATGGTTTCCTAAGGAAAATCAATTTTATTTGTCTTGTAGTCCACTAATGAAGTATGAACTA TAATGTTAGGCCACATGTCATTATTTTGTGCTGAGACATTCATATTGTTGATCTTTCTTTTTGTCTGTTAGCTACTTCAT TGTGCATACTTCTATTAATTACTTGTAGCTTAAATTCTGTCTCCATAATTTAATTATGTGTGTTTTATTTCATTCTTACA TGTGATGCAATTTTATTGACATTGAGCACACTTTTCTTACATATTGAGGAAGGTCGGGCTTAACAATCAAGAAAAGAAAA AAAGTTTGGGCTCAGACCCCTTATTTTTTTAAATACTGCTTCTGTTCTATCTAGTATCTTGCAACTTGTATATCTATTTG GAATTAGAGTTGGAGGCTACTTTTTGTCTGTTAGCTACTTCATTTATGATTTTTGGATTTAGCCCTCTTTGGCAGGGTAT ACCTGAAATTGCAGGTTAAACTATGCGCGGAGGTGCTCACTTGCTATTATTTAATATAATAACTATCAAGTTTATGTTTG CTATCTATTGACAAGTTCTTGATAGAAGTAGTTGCATGCTTTTTGGGTAATAAAGGTCTTCTTTTTTATTAGCTGGTTCT CATGTTGCATTAAATTTTTTCTTCAAAAACTGCCACTTATTTTTTATTAAAGCAGAATTTTAAATTTCCTTGTGATATCA CATTAAAACAAAACCTTTTGTCATTTTGTAGACTCAGAAGATGCATCCTTGCATGTATGATGATCCCCATGAGCCAGCCT ACAATCTTAGAGAGAGGCAGACAAGTAATAATAAGCCACCATCCAGACAACTTACATCAGCTGTGCGAAGGTCTTCCAAA TCATATCTAAGAACTGGAGGAGAATCTGACAGTTCCTCTGGTTCAAAGACAGGTTTTGATGGATGTCCGGTATTACCCAT CCCCCTAGGGCCGAGAAATCAGGCTGAAGTACCAGAGTGGACCGGCTTGACTTCTGAAAGTAATTCTAAGTGGTTGGGGA CCCAAATATGGCCCTTGCAAAAAGTTAATTCCAGACTTCTTATTGAAAGGGATCCCATAGGAAAGGGAAGACAAGATTTA TGTGGCTGCTCAGTGCCAGGTTCTGTTGAGTGCGTCAGATTCCACATTGCTGAGAAAAGGGCTAAAGTTAAGCTGGAATT AGGTGTGGCTTTTCACCAATGGAATTTGGATAAGATAGGTGAAGATGTTAGGATTTTGTGGACACATGAAGAAGAGAAAA AATTCAAGGACGCTGTAGAATGGGACCCTCCATCTTCTGAGGAATATTTGGGATATTTCTGGGATCCAATTTTTAAAACA TTTCCTCAGAAGAGCACTGCAGATTTAGTTAGCTACTACTTAAATGTATTTCTTTTGCAACGCAGAGGACACCAGAATAG GCATACTCCTGATGACGCTAATAGTGAAGATGATGAATCACAAGAACCTCGATTGAGGAGTGGTTTTGGACGTAAATCAT GTGGCCCCATCTCATTAACCCTGAAAAAGCCACGGCCAAAGGGAAAGCGTAGGAAATGAATGTCTGTCAAAATTGGAGCT TTGTTGAGAATGGATATTTTGGCAAATTTTTTTTTTATCTTCACTGGCAATTTTCAGTACTGATGGAACTTCCTCCCCTT CTTTTGAATATGAATCATCATTGCTTTTGAGGAGTAGAACTAGAAGGTTGGAATTTGAAAGGTGGGTTTGGTGTAGGGTC AATTCAGGAAAGATGGTGTTTTTTTAATGGTGGAAGCAGGAAAAGTTGAACAGCTCAGGAGTTGTAGTTTATTTCAGTTA CATGCTTATGAGTTGAAGATGTGACTTTGTCGTTCCACAATGATACAGAATGCAAGGTTTACTTAACACAGAAACCTTAG GAATACAAATCGACATTTTGTTATAGAGGGTCATGGTCAAATACATAACAATGCAATTCAAATTGTAGCTTTTGTTTTGA TGCTGGTTTATGTTGGATGTTCCTTTCTTTCTTTCAATGCGATATAGAAACGGTTTTGGTTCAGATATTTTCAGTTTGGT TTATTAATTTACCTATGCTTAGTGATTGACTGTTCTATTCATGCTCTTGCAAATTTATGTTGTCTGCATATTCAGGAGTT GTTTGTCTTCCAGACTTCAT
CDS sequence (LotjaGi3g1v0384700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGGGGCGGTCGCTGCTCGACGGTGGGGGAACAGTGAAAGGTAGCGGCGGCGGCGGCGGTGGTGGCGGTGGGACTCC GCGTCGTTTTGAGGAGCTTTTGGGTGAGTTCTTACAGGCTCTGAATCTGTTGCGTCCTTATCCTCCAATGCTGGGTGATG GGAAGAAGGTGGATTTGTACAAGCTGTACATGGTGGTGAAGGGGAAAGGTGGGTTTGAGGCTGTGACCAATGGGAAGCTT TGGGATTTGGTTGGGGAGGAGTCTGGGTGTGGTGTGAGGGTTGGTCCTACTGTGAAACTGTTTTATGGTAAATACTTGAG TCCTTTGGATACATGGGGGAAGAAATTTGGTGATAGTAAGGTGGTTCCTGAGTGTGTTTTGGTGGGTGATAGGGATAGGT TTGGTAGGTGTTTGATGGAGTTGAAGGCTGAGGTGAGAGGGATGCTAGATGGCCGTGCTGCTGCGGATGAGGTAGATGGG GAGGAGGTCAAGTTGTGTGGGCTGATGGATGAGTCTGTTCTTGGGAATTTGTGTGAGGGCAATGATCAAATGGGAGTGTT GGAAGGGTTTGATGGAGGGAAAATGTCTGCTGAGCCAGAAATCGATGCATCTGATGCCGTGAACAGCAGCTTGCCTGGAT TGTTGAGTGAAGGTGAGAAGTGTGATGATGGTGTTGTGGTATTGGCTTCATCTGGTGGTGATAGCGAGAAGTTTGGCTGT AAGAGGAAGAGGCAGTCTATGCTTGATTGGCTGAGATGGCTTGCTGGTGTTGCGAAGAATCCTTATGATCCGGCAGTTGG TGCGGTGCCTGAAAAGTCAAAGTGGAATTCTTACAGTAATCAGGAGTTCTGGAAGCAGGTTTTGTTGTTTCGAGAGGCTG TATTTTTCAAAAAAGTGTTCGAGTCGAGCAGCGAGCAACAGACTTGGCAGACTCAGAAGATGCATCCTTGCATGTATGAT GATCCCCATGAGCCAGCCTACAATCTTAGAGAGAGGCAGACAAGTAATAATAAGCCACCATCCAGACAACTTACATCAGC TGTGCGAAGGTCTTCCAAATCATATCTAAGAACTGGAGGAGAATCTGACAGTTCCTCTGGTTCAAAGACAGGTTTTGATG GATGTCCGGTATTACCCATCCCCCTAGGGCCGAGAAATCAGGCTGAAGTACCAGAGTGGACCGGCTTGACTTCTGAAAGT AATTCTAAGTGGTTGGGGACCCAAATATGGCCCTTGCAAAAAGTTAATTCCAGACTTCTTATTGAAAGGGATCCCATAGG AAAGGGAAGACAAGATTTATGTGGCTGCTCAGTGCCAGGTTCTGTTGAGTGCGTCAGATTCCACATTGCTGAGAAAAGGG CTAAAGTTAAGCTGGAATTAGGTGTGGCTTTTCACCAATGGAATTTGGATAAGATAGGTGAAGATGTTAGGATTTTGTGG ACACATGAAGAAGAGAAAAAATTCAAGGACGCTGTAGAATGGGACCCTCCATCTTCTGAGGAATATTTGGGATATTTCTG GGATCCAATTTTTAAAACATTTCCTCAGAAGAGCACTGCAGATTTAGTTAGCTACTACTTAAATGTATTTCTTTTGCAAC GCAGAGGACACCAGAATAGGCATACTCCTGATGACGCTAATAGTGAAGATGATGAATCACAAGAACCTCGATTGAGGAGT GGTTTTGGACGTAAATCATGTGGCCCCATCTCATTAACCCTGAAAAAGCCACGGCCAAAGGGAAAGCGTAGGAAATGA
Protein sequence (LotjaGi3g1v0384700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTGRSLLDGGGTVKGSGGGGGGGGGTPRRFEELLGEFLQALNLLRPYPPMLGDGKKVDLYKLYMVVKGKGGFEAVTNGKL WDLVGEESGCGVRVGPTVKLFYGKYLSPLDTWGKKFGDSKVVPECVLVGDRDRFGRCLMELKAEVRGMLDGRAAADEVDG EEVKLCGLMDESVLGNLCEGNDQMGVLEGFDGGKMSAEPEIDASDAVNSSLPGLLSEGEKCDDGVVVLASSGGDSEKFGC KRKRQSMLDWLRWLAGVAKNPYDPAVGAVPEKSKWNSYSNQEFWKQVLLFREAVFFKKVFESSSEQQTWQTQKMHPCMYD DPHEPAYNLRERQTSNNKPPSRQLTSAVRRSSKSYLRTGGESDSSSGSKTGFDGCPVLPIPLGPRNQAEVPEWTGLTSES NSKWLGTQIWPLQKVNSRLLIERDPIGKGRQDLCGCSVPGSVECVRFHIAEKRAKVKLELGVAFHQWNLDKIGEDVRILW THEEEKKFKDAVEWDPPSSEEYLGYFWDPIFKTFPQKSTADLVSYYLNVFLLQRRGHQNRHTPDDANSEDDESQEPRLRS GFGRKSCGPISLTLKKPRPKGKRRK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 25 | 25 | - | – | |
| SMART | 21 | 110 | 90 | 3.6E-13 | – | |
| ProSiteProfiles | 24 | 114 | 91 | 17.631 | ||
| SMART | 25 | 115 | 91 | 1.1E-12 | ||
| Gene3D | 26 | 123 | 98 | 1.8E-10 | ||
| CDD | 26 | 110 | 85 | 1.38315E-18 | – | |
| SUPERFAMILY | 28 | 117 | 90 | 1.28E-17 | ||
| Pfam | 28 | 109 | 82 | 7.7E-11 | ||
| PANTHER | 30 | 582 | 553 | 9.5E-185 | – | |
| PANTHER | 30 | 582 | 553 | 9.5E-185 | – | |
| MobiDBLite | 331 | 371 | 41 | - | – | |
| MobiDBLite | 331 | 372 | 42 | - | – | |
| SMART | 380 | 431 | 52 | 2.3E-4 | ||
| CDD | 480 | 530 | 51 | 0.00648196 | ||
| MobiDBLite | 538 | 559 | 22 | - | – | |
| MobiDBLite | 538 | 585 | 48 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi3g1v0384700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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