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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0385200 |
| Transcript ID | LotjaGi3g1v0385200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT2G46050.1 Pentatricopeptide repeat (PPR-like) superfamily protein; Swiss-Prot: sp|O82363|PP203_ARATH Pentatricopeptide repeat-containing protein At2g46050, mitochondrial; TrEMBL-Plants: tr|A0A072TMX0|A0A072TMX0_MEDTR PPR containing plant-like protein; Found in the gene: LotjaGi3g1v0385200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:78042115..78044207) extracted from Lotus japonicus Gifu genome v1.2.
TTCGCCTTCCTTGATTTCAAAATAATTTATCAAATATCAAATTCATCTCGATAAATCTTATGGTCTGCAAATTCCATTTC AAAAAACAGCTCCATTTCACTCCAATCCTTTATTCATTTGTTGCTCAATGCTTCTCTAACTCTTCTCATCAACCCCATCC ATGGAGCAGACTCAGAGCTTCTGTATCAGTCCCTGATCAAACCCTTTTCAGGGACCCTGACACTGTTCATTTGTTTTGTG CCAATGCCCTTAAAGTCTCTGCCAAAAGGGCTTTTCTTCCGGAAGGAAAACAGTTACATGCCCATTTGATAAAGTTCGGA TTTTGTCATGTGCTGTCCTTACAAAATCAAATTTTGAGTGTTTATCTTAAATGCAAGGAAATTGAAGATGCAGATAAACT ATTTGATGAATTGCCTGGCAGAAATGTGGTGTCGTGGAACATTATGATTCGCGGTGTTGCCGGACGCGACAATGAAAACG ACTCGAGTGCACCACTGTGTGTTTCTTATTTTAAAAGGATGCTGTTGGAAAAGGTGGTTCCAGATTATGTAACTTTTAAT GGCCTTATTGGTTCATGTGTTCAGTTTCATAACATTGGTGTGGGTATCCAGCTGCATTGTTATACAGTGAAAGTGGGATT TGATTTGGATTGTTTTGTTGGTTGTGCTCTTGTTGATTTATATGCAAAATGTGGCTTAGTTGAGAATGCAAGGAGGGCTT TTTGTGCTGTTCCATGTAGAGATTTGGTAATGTGTAATGTGATGATTTCTTGCTATGCCTTGAATTGTTTACCTGAAGAG GCTTTTAGCATGTTCAACTTGTTGAGAATGGATGGTGCAAATGGGGATGAGTTCACTTTTAGCAGCCTGCTTAGTGTATG TGATACTTTGGAATATTATGATATTGGGAAGCTGGCTCACAGTCTTATTCTGAGACAGGCATTTGATTCAGATGTTTTAG TGGCTAGTGCATTGATCAACATGTATGCCAAAAACGAAAATATAACCGATGCACGCGGGGTATTTGATGAAATGCTGATT CGAAATGTTGTGGCATGGAACACCATCATTGTTGGGTGTGGGAATTATGGAGATGGGAGTGAAGTTCTGAAGCTTCTCAG AGACATGCTTCGTGAAGGGTTTTCCCCTGATGAATTGACTATTTCCAGCACTATTAGTTTGTGCGGCTATGCTTCTGCCA TAACCGAAACACTGCAAACTCATGCCATTGCAGTTAAATTATCCTTTCAAGAATTTCTATCCGTTGCCAATTCTTTGATT AGCGCCTACTCCAAGTGCGGTAACATTACTAGTGCATTGAAATGCTTCAGATTAACAGAAGAACCTGATCTTGTTACATG GACTTCATTAATACATGCATATGCATTCCATGGTCAAGCCGAAAAAGCTACTGAAATGTTTGAGAAGATGCTATCTTGCG GCGTAGTACCTGATCGAGTTTCGTTTCTTGGTGTTCTCTCTGCTTGTGCCCATTGTGGGCTTGTAACAAAGGGACTTCAT TACTTTAACTTGATGACCAGTGTGTATCAGATAGTTCCTGATTCAGATCATTACACTTGCCTTGTTGACCTTCTTGGACG ATATGGTCTTATAGATGAGGCTTTTGAATTGTTAAGGTCTATGCCTGTGGAAGTTGAATCAGATACGTTAGGAGCATTTA TTGGATCTTGCAAACTCCATGCAAATATAGGACTAGCTGAATGGGCTGCAGAGAAGCTCTTCATCATTGAGCCAGAGAAA AGTGTAAACTATGCAGCCATGTCTAACATTTATGCTTCTCAGAGAGATTGGTGTGATGTGGAAAGAGTTAGGAAAATGAT TGGAGACAAAGGTGATGCAAAAGTCCCAGGTTGCAGCTGGATTGAGGTTGCTAATCAAGTTCATTCATTTGTATCCCGTG ATAAGACCCATCCTAAAGCTTTAGAAATGTATGCTACATTAAAAATGTTACACGTGTGTTTGGATACCAGTTGTTGGCTG TAACTTAAAAGGAATTTTATCCCAATTTACATAAAGAATTTTGTTCATTTTCATGTATCCAAATCACATGATCTAAATCA GCATGGATTATCC
CDS sequence (LotjaGi3g1v0385200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTCTGCAAATTCCATTTCAAAAAACAGCTCCATTTCACTCCAATCCTTTATTCATTTGTTGCTCAATGCTTCTCTAA CTCTTCTCATCAACCCCATCCATGGAGCAGACTCAGAGCTTCTGTATCAGTCCCTGATCAAACCCTTTTCAGGGACCCTG ACACTGTTCATTTGTTTTGTGCCAATGCCCTTAAAGTCTCTGCCAAAAGGGCTTTTCTTCCGGAAGGAAAACAGTTACAT GCCCATTTGATAAAGTTCGGATTTTGTCATGTGCTGTCCTTACAAAATCAAATTTTGAGTGTTTATCTTAAATGCAAGGA AATTGAAGATGCAGATAAACTATTTGATGAATTGCCTGGCAGAAATGTGGTGTCGTGGAACATTATGATTCGCGGTGTTG CCGGACGCGACAATGAAAACGACTCGAGTGCACCACTGTGTGTTTCTTATTTTAAAAGGATGCTGTTGGAAAAGGTGGTT CCAGATTATGTAACTTTTAATGGCCTTATTGGTTCATGTGTTCAGTTTCATAACATTGGTGTGGGTATCCAGCTGCATTG TTATACAGTGAAAGTGGGATTTGATTTGGATTGTTTTGTTGGTTGTGCTCTTGTTGATTTATATGCAAAATGTGGCTTAG TTGAGAATGCAAGGAGGGCTTTTTGTGCTGTTCCATGTAGAGATTTGGTAATGTGTAATGTGATGATTTCTTGCTATGCC TTGAATTGTTTACCTGAAGAGGCTTTTAGCATGTTCAACTTGTTGAGAATGGATGGTGCAAATGGGGATGAGTTCACTTT TAGCAGCCTGCTTAGTGTATGTGATACTTTGGAATATTATGATATTGGGAAGCTGGCTCACAGTCTTATTCTGAGACAGG CATTTGATTCAGATGTTTTAGTGGCTAGTGCATTGATCAACATGTATGCCAAAAACGAAAATATAACCGATGCACGCGGG GTATTTGATGAAATGCTGATTCGAAATGTTGTGGCATGGAACACCATCATTGTTGGGTGTGGGAATTATGGAGATGGGAG TGAAGTTCTGAAGCTTCTCAGAGACATGCTTCGTGAAGGGTTTTCCCCTGATGAATTGACTATTTCCAGCACTATTAGTT TGTGCGGCTATGCTTCTGCCATAACCGAAACACTGCAAACTCATGCCATTGCAGTTAAATTATCCTTTCAAGAATTTCTA TCCGTTGCCAATTCTTTGATTAGCGCCTACTCCAAGTGCGGTAACATTACTAGTGCATTGAAATGCTTCAGATTAACAGA AGAACCTGATCTTGTTACATGGACTTCATTAATACATGCATATGCATTCCATGGTCAAGCCGAAAAAGCTACTGAAATGT TTGAGAAGATGCTATCTTGCGGCGTAGTACCTGATCGAGTTTCGTTTCTTGGTGTTCTCTCTGCTTGTGCCCATTGTGGG CTTGTAACAAAGGGACTTCATTACTTTAACTTGATGACCAGTGTGTATCAGATAGTTCCTGATTCAGATCATTACACTTG CCTTGTTGACCTTCTTGGACGATATGGTCTTATAGATGAGGCTTTTGAATTGTTAAGGTCTATGCCTGTGGAAGTTGAAT CAGATACGTTAGGAGCATTTATTGGATCTTGCAAACTCCATGCAAATATAGGACTAGCTGAATGGGCTGCAGAGAAGCTC TTCATCATTGAGCCAGAGAAAAGTGTAAACTATGCAGCCATGTCTAACATTTATGCTTCTCAGAGAGATTGGTGTGATGT GGAAAGAGTTAGGAAAATGATTGGAGACAAAGGTGATGCAAAAGTCCCAGGTTGCAGCTGGATTGAGGTTGCTAATCAAG TTCATTCATTTGTATCCCGTGATAAGACCCATCCTAAAGCTTTAGAAATGTATGCTACATTAAAAATGTTACACGTGTGT TTGGATACCAGTTGTTGGCTGTAA
Protein sequence (LotjaGi3g1v0385200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVCKFHFKKQLHFTPILYSFVAQCFSNSSHQPHPWSRLRASVSVPDQTLFRDPDTVHLFCANALKVSAKRAFLPEGKQLH AHLIKFGFCHVLSLQNQILSVYLKCKEIEDADKLFDELPGRNVVSWNIMIRGVAGRDNENDSSAPLCVSYFKRMLLEKVV PDYVTFNGLIGSCVQFHNIGVGIQLHCYTVKVGFDLDCFVGCALVDLYAKCGLVENARRAFCAVPCRDLVMCNVMISCYA LNCLPEEAFSMFNLLRMDGANGDEFTFSSLLSVCDTLEYYDIGKLAHSLILRQAFDSDVLVASALINMYAKNENITDARG VFDEMLIRNVVAWNTIIVGCGNYGDGSEVLKLLRDMLREGFSPDELTISSTISLCGYASAITETLQTHAIAVKLSFQEFL SVANSLISAYSKCGNITSALKCFRLTEEPDLVTWTSLIHAYAFHGQAEKATEMFEKMLSCGVVPDRVSFLGVLSACAHCG LVTKGLHYFNLMTSVYQIVPDSDHYTCLVDLLGRYGLIDEAFELLRSMPVEVESDTLGAFIGSCKLHANIGLAEWAAEKL FIIEPEKSVNYAAMSNIYASQRDWCDVERVRKMIGDKGDAKVPGCSWIEVANQVHSFVSRDKTHPKALEMYATLKMLHVC LDTSCWL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 48 | 175 | 128 | 6.0E-106 | – | |
| Gene3D | 51 | 186 | 136 | 5.3E-13 | ||
| ProSiteProfiles | 91 | 125 | 35 | 7.015 | ||
| Pfam | 96 | 122 | 27 | 0.21 | ||
| ProSiteProfiles | 162 | 196 | 35 | 6.204 | ||
| PANTHER | 182 | 277 | 96 | 6.0E-106 | – | |
| Gene3D | 187 | 281 | 95 | 9.0E-13 | ||
| ProSiteProfiles | 197 | 227 | 31 | 5.207 | ||
| ProSiteProfiles | 228 | 262 | 35 | 7.969 | ||
| Pfam | 230 | 259 | 30 | 1.4E-4 | ||
| TIGRFAM | 230 | 259 | 30 | 6.5E-5 | ||
| Gene3D | 282 | 393 | 112 | 8.3E-19 | ||
| PANTHER | 285 | 385 | 101 | 6.0E-106 | – | |
| ProSiteProfiles | 298 | 328 | 31 | 7.794 | ||
| TIGRFAM | 303 | 331 | 29 | 4.9E-4 | ||
| Pfam | 328 | 375 | 48 | 1.2E-9 | ||
| ProSiteProfiles | 329 | 363 | 35 | 11.564 | ||
| TIGRFAM | 331 | 365 | 35 | 1.5E-7 | ||
| PANTHER | 387 | 593 | 207 | 6.0E-106 | – | |
| ProSiteProfiles | 399 | 429 | 31 | 6.073 | ||
| Gene3D | 400 | 640 | 241 | 3.5E-37 | ||
| Pfam | 404 | 424 | 21 | 0.0039 | ||
| Pfam | 429 | 477 | 49 | 6.0E-10 | ||
| ProSiteProfiles | 430 | 464 | 35 | 12.781 | ||
| TIGRFAM | 432 | 465 | 34 | 2.1E-7 | ||
| ProSiteProfiles | 465 | 495 | 31 | 6.106 | ||
| ProSiteProfiles | 501 | 531 | 31 | 8.232 | ||
| Pfam | 504 | 529 | 26 | 0.0035 | ||
| TIGRFAM | 505 | 528 | 24 | 0.0028 | ||
| ProSiteProfiles | 567 | 601 | 35 | 5.251 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0385200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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