Transcript — View — Lotus Base

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LotjaGi3g1v0393200.2

Overview

Field	Value
Gene ID	LotjaGi3g1v0393200
Transcript ID	LotjaGi3g1v0393200.2
Related isoforms 1	LotjaGi3g1v0393200.1
Lotus japonicus genome version	Gifu v1.2
Description	Trichome birefringence-like protein; TAIR: AT1G01430.1 TRICHOME BIREFRINGENCE-LIKE 25; Swiss-Prot: sp\|Q84JH9\|TBL25_ARATH Protein trichome birefringence-like 25; TrEMBL-Plants: tr\|A0A151UEW7\|A0A151UEW7_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0393200
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:79215390..79217829) extracted from Lotus japonicus Gifu genome v1.2.

ATGAGGTCTGATTTGGGCCCATTTTCCCTGCAAAAGCACAACCATGTATGTGCCAAGTTTGCAGCATCATTTTTCTTGGT GGGTCTCGCTTTTCGCCTTCTCTTGTGGGATTCATTCAGCTTCTCATCATCACTAGTGAAGAAGACACTACCACCTCCTC TTGCAGAAGCAAAAGCAGAGTCCCCTGTTTTTTCTTTACCTCTTCAGGCATCTGATTTTGTTGAATTTCCAGGATACAAC CAGAGCCAAACCTCTCAGGATGGTAAGAAACATTTTTTTTTATGTGCTTGAGGTGAATAAAAATTTCAATGGAGACATGC ATATGGTTTCAAACTGCAGACTGATTTTGGAGTTACTGCATTGCTATTAGGATTGCAATTAAGGTCGCATCAACCAGCAT TTGTTTGCAATTCCGTGACACAGCGGCAACCGTGATCGCAATTTAAAACTGCATGAACTGCAAATCTTCATGGACTAATG TGAGTTAAAAATATTTTTCTTGCAGAGAAATGTGATCTTTTTGTGGGAGATTGGGTACCAGATCTATCTGGTCCAGTTTA CACCAATGAGAGTTGCCAAGTGATTGAACACCATCAAAACTGCATGAAGAATGGACGCACTGATTCAGGGTACCTTTACT GGAGGTGGAAGCCACGACACTGTGAGTTACCAAAGTTCAATCCAAAGAATTTTCTCAATTTTATGAGAAATAAAGCAATG GCATTTGTTGGTGATTCCATCTCCAGGAACCATGTGCAGTCCCTACTTTGCATTCTCTCACAGGTATGGTGAATTTCTCT GTCTGCTAACCAATTCACAACTTTGATAATATGCATAGCTTTTTGGTTTGAAAGATTCTTTTCTTGATTAGTGTGAGTTG GCCTACTCTTTTTTTTTTTTTTTTGCTTTTGCTTCACTCCACTTTCTATGGCTTGCCAATTTTTTAGAAATATATCAGTA TGACAAGATCTTTGTTGGGGTTTTTTTTTTGAATTTAAATATAGTAAAAACAGATTCCAAGAATTTAAAATGACTCATGA GGCCATTTGATTGTATGATATGAGGCACATACATTGTTTATGGAGTTTCTTGTCCATTGATCATGAAGCGTAGTGAAAAT CAATCATGTAAGAGTTGTTTTCAGATTATGACTTGTGAGTTATGAGCATTAAGATTCAACAGATTAAATTGCACGCCATT TCATTGGTGGAAGACAGTTGGTGCATTATATCATATGGTTGGTCCATTGTCTTCAAATAATTTAGCTTCTAAAAAGTATG GAAACAGGAAAATAACATATTTCATGGCACTTTTGTTGAAGTAGCAAGTTGTTATTTCAAAAAAAAATTTGCCTTGGGAT GTGTTATTTCTCATTTTCATACTATCTAATGGTAAATCAAACAAACTCTTAGGTTCTTTGCCAAGCATTTTCTGTTGATT ATTTGTTTGCTACATTGATAAAAAAAATAGTGTTTCGAAATGTGTTATTTTCTTATATTCATACTTTCTAATGGTAAACC AAATAGAGGCTCGTTGTCTTTTGCCAAGCATTTTCTGTTGATTTTTTGTGGCATGGTGCATTTTCTGTGGTTAATCATTA ATTATTTTGGTCCTACAAATTGAGTATTAGATCATATATTCATATTCTAATGATTTCATTCTACAGGTGGAACCAGCTGT TGAGGTCTACCATGACAAGGAATATAGATCAAAGATATGGAAATTCCCCTCTCACAACTTCACACTCTCAGTAATTTGGA CCCCTTTCCTTATCAAAGCAGCTATATTTGAAGACATGAATGGGGTAACCTCTTCAGAGATTCAGCTTTCTCTTGACAAT CTCGACACCTTATGGACCAATCAATATAAGAATTTCGATTATGCGGTAATTGGTGGGGGAAAATGGTTTCTCAAGACTGC AATATACCATGAAAACAACACAGTCACAGGCTGCCATTACTGTCCTGGGAAGAATCTAACAGAGCTAGGATTCGACTACG CATACCGCAAAGCACTAGAACTTGTTTTCAACTTCTTCACAAGCTCTGATCACAAAGCCACTGTTTTCTTCAGAACCACC ACACCTGACCACTTTGAGAATGGGGAGTGGTTTAGTGGAGGGTATTGTAATAGAACCGTGCCCTTCAAAGAGGGTCAGAT AGATATGGTTGATGTAGATTCCATCATGCGAGGTATCGAAGTAGAAGAATTTGAGAAGGCGAATTCGCAAGGATCTGAAC AAGGGGTGAAGTTGAAACTCTTGGACACAACTCATCTTTCATTGTTAAGACCGGATGGACACCCAGGACCTTACCGGCAG TTCCAGCCATTTGCAAAAGATAAGAATGCTAAAGTTCAAAATGATTGTCTACATTGGTGTTTGCCGGGACCAATTGACTC ATGGAATGACATAGTAATGGAAATGCTAGTCAATTCTTAG

Download Genomic Sequence

CDS sequence (LotjaGi3g1v0393200.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGGTCTGATTTGGGCCCATTTTCCCTGCAAAAGCACAACCATGTATGTGCCAAGTTTGCAGCATCATTTTTCTTGGT GGGTCTCGCTTTTCGCCTTCTCTTGTGGGATTCATTCAGCTTCTCATCATCACTAGTGAAGAAGACACTACCACCTCCTC TTGCAGAAGCAAAAGCAGAGTCCCCTGTTTTTTCTTTACCTCTTCAGGCATCTGATTTTGTTGAATTTCCAGGATACAAC CAGAGCCAAACCTCTCAGGATGGTCAGAAATGTGATCTTTTTGTGGGAGATTGGGTACCAGATCTATCTGGTCCAGTTTA CACCAATGAGAGTTGCCAAGTGATTGAACACCATCAAAACTGCATGAAGAATGGACGCACTGATTCAGGGTACCTTTACT GGAGGTGGAAGCCACGACACTGTGAGTTACCAAAGTTCAATCCAAAGAATTTTCTCAATTTTATGAGAAATAAAGCAATG GCATTTGTTGGTGATTCCATCTCCAGGAACCATGTGCAGTCCCTACTTTGCATTCTCTCACAGGTGGAACCAGCTGTTGA GGTCTACCATGACAAGGAATATAGATCAAAGATATGGAAATTCCCCTCTCACAACTTCACACTCTCAGTAATTTGGACCC CTTTCCTTATCAAAGCAGCTATATTTGAAGACATGAATGGGGTAACCTCTTCAGAGATTCAGCTTTCTCTTGACAATCTC GACACCTTATGGACCAATCAATATAAGAATTTCGATTATGCGGTAATTGGTGGGGGAAAATGGTTTCTCAAGACTGCAAT ATACCATGAAAACAACACAGTCACAGGCTGCCATTACTGTCCTGGGAAGAATCTAACAGAGCTAGGATTCGACTACGCAT ACCGCAAAGCACTAGAACTTGTTTTCAACTTCTTCACAAGCTCTGATCACAAAGCCACTGTTTTCTTCAGAACCACCACA CCTGACCACTTTGAGAATGGGGAGTGGTTTAGTGGAGGGTATTGTAATAGAACCGTGCCCTTCAAAGAGGGTCAGATAGA TATGGTTGATGTAGATTCCATCATGCGAGGTATCGAAGTAGAAGAATTTGAGAAGGCGAATTCGCAAGGATCTGAACAAG GGGTGAAGTTGAAACTCTTGGACACAACTCATCTTTCATTGTTAAGACCGGATGGACACCCAGGACCTTACCGGCAGTTC CAGCCATTTGCAAAAGATAAGAATGCTAAAGTTCAAAATGATTGTCTACATTGGTGTTTGCCGGGACCAATTGACTCATG GAATGACATAGTAATGGAAATGCTAGTCAATTCTTAG

Download CDS Sequence

Protein sequence (LotjaGi3g1v0393200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MRSDLGPFSLQKHNHVCAKFAASFFLVGLAFRLLLWDSFSFSSSLVKKTLPPPLAEAKAESPVFSLPLQASDFVEFPGYN QSQTSQDGQKCDLFVGDWVPDLSGPVYTNESCQVIEHHQNCMKNGRTDSGYLYWRWKPRHCELPKFNPKNFLNFMRNKAM AFVGDSISRNHVQSLLCILSQVEPAVEVYHDKEYRSKIWKFPSHNFTLSVIWTPFLIKAAIFEDMNGVTSSEIQLSLDNL DTLWTNQYKNFDYAVIGGGKWFLKTAIYHENNTVTGCHYCPGKNLTELGFDYAYRKALELVFNFFTSSDHKATVFFRTTT PDHFENGEWFSGGYCNRTVPFKEGQIDMVDVDSIMRGIEVEEFEKANSQGSEQGVKLKLLDTTHLSLLRPDGHPGPYRQF QPFAKDKNAKVQNDCLHWCLPGPIDSWNDIVMEMLVNS

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
Phobius	NON_CYTOPLASMIC_DOMAIN View details on NON_CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	1	19	19	-	–
PANTHER	PTHR32285:SF219 View details on PTHR32285:SF219 Search for proteins/transripts with this domain View external data on PTHR32285:SF219	11	437	427	2.4E-195	–
PANTHER	PTHR32285 View details on PTHR32285 Search for proteins/transripts with this domain View external data on PTHR32285	11	437	427	2.4E-195	IPR029962 Show description in modal box View details on IPR029962 Search for proteins/transripts with this domain View on EBI InterPro Service
Phobius	TRANSMEMBRANE View details on TRANSMEMBRANE Search for proteins/transripts with this domain	20	39	20	-	–
Phobius	CYTOPLASMIC_DOMAIN View details on CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	40	438	399	-	–
Pfam	PF14416 View details on PF14416 Search for proteins/transripts with this domain View external data on PF14416	89	142	54	8.8E-23	IPR025846 Show description in modal box View details on IPR025846 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF13839 View details on PF13839 Search for proteins/transripts with this domain View external data on PF13839	143	434	292	2.0E-92	IPR026057 Show description in modal box View details on IPR026057 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0393200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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