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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0393700 |
| Transcript ID | LotjaGi3g1v0393700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT4G01030.1 pentatricopeptide (PPR) repeat-containing protein; Swiss-Prot: sp|Q9SV26|PP297_ARATH Pentatricopeptide repeat-containing protein At4g01030, mitochondrial; TrEMBL-Plants: tr|A0A0R0J0H5|A0A0R0J0H5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0393700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:79282942..79286806) extracted from Lotus japonicus Gifu genome v1.2.
TCATTAAATAAGATATCACCTCAAAATAAAATTTTAGAAACACCATGAAAGAAAAAGTCTGGGATTCTGTAATCTAGGAA TAGTATTCTACAATCTAGTATTTGCAATTGTAGCTAAGGTTCACCCACCAACCATTTTACCTTTTTTCAGTTCAACACTT CACTTGTATGAGAATCAACCAAACCTTATCCACAAAAAACTCAAGTTCTGGCTTGGCATTCCACAAGCTCACAACAAATT CTCTAGCATTCCCTCCAAATTCTAGGAAATGGATCATTGGAAATGCATCACTAGCTAGAGCTATGTTACTATGATCTTGT CATTGCCATTTCATCACAGTTATTCAGTCCAATGAAATTTTGCATCTTCTCTCAGAACCAAAGCTTTATGGATAAGCTAG CTCCCTTTCATAATCTTAATCCTTATACTGCTCACATGCTACCAAAATGCCATTCACCAACTTCAGTTTCTCTTGGATTG TCAGATACTCAGTTCTTTTCTTCAGCTCAATTTTCCACACCAAGATTTTCTCCTTCCTTTCAGTCTTTGGATGAGTTGGG TGGGATAAGGACTTTGAATTCTGTCAGGGAATTGCATGCAAAGATGTTGAAGATCCCAAATAAGAGGAGCATGACAACAA TGGATGGAAGCTTGATAAGATACTATTTGGAGTTTGGAGATTTCATGTCAGCAATAAAGGTGTTCTTTGTGGGTTTTGCT AAGAATTATCATCTCTGCAATTCTTTTCTGGATGAATTTGGAAGTTCTGGAGGTGACCCACATCAGATTCTGGAGGTCTT CAAGGAACTGCATAGTAAAGGTGTGGAATTTGATAGCAGAGCTCTCACTGTTGTTCTGAAAATTTGCATGAGTTTGATGG ATTTGTGGGCTGGGTTGGAAATTCATGCTTGTTTGGTCAAGAGAGGGTTCCATGTTGATGTACATTTGAGTTGTGCATTG ATCAATTTCTATGAGAAGTGCTGGGGTATAGACAAGGCAAATCAAGTGTTTGATGAAACTTCTCACCAAGAAGATTTCTT GTGGAATACAGTAATTATAGCAAACTTGAGGAGTGAAAGATATGGGAAGGCCTTAGAGCTATTCCGTAGCATGCAGTCAG CTTCTGCCAAAGCCACTGGTGGTACCATTGTCAAGCTGCTGCAGGCATGTGGAAAACTGAGAGCTCTCAATGAAGGAAAG CAGATTCATGGGTACGTTTTAAGATCTGGACTAGTGTCAAATACGTCGATTTGCAATACTATAATTAGCATGTACTCTAG AAACAATAGACTCAAACTAGCTAAAGCAGTTTTTGATTCAATGGAGGATCCTAACTTATCATCTTGGAACTCAATAATTT CGAGTTATGCGATTGGTGGCTGCTTGAATGATGCATGGGACACTTTAAAAGAAATGGAGCATTCCAGCATTAAACCAGAC ATTGTAACATGGAATTCTCTTTTGTCTGGCCATCTTCTTCAGGGGTCATATGAAATGGTTCTCTCCAGTTTACGGAGCCT GCGAAGTGCAGGCTACAAGCCAGATTCATGTTCTATAACTAGTGCCCTACAAGCAGTTATTGAATTGGGTTGCTTTAAAT TAGGTAAAGAAATCCATGGTTACACAATTAGAAGTATGCTTAACAGTGATGTCTATGTCAGTACCTCATTGGTGGATATG TATGTTAAGAATGATTGTTTAGGTAAAGCTCATGCAGTGTTCCTTCATGCAAAGAACAAAAACATTTTTGCCTGGAACTC ATTGATATCTGGTTACTCCTACAAGGGCCTGTTCAGTGATGCTGAAAAACTATTGAACCAGATGGAGGAGGAAGGGATGA AACCTGATCTGGTGACATGGAATGGTTTGGTTTCAGGTTATTCATTGTGGGGCTGTAATGAGGAAGCTTTTGCTGTGATC AATCGAATCAAGAGTTCAGGACTTCGTCCTAATGTCGTGTCGTGGACCGCTATGATCTCAGGATGTTCTCAAAATGAGAA GTATATGGATGCCCTACAGCTTTTCAGCCAAATGCAAGCAGAAAATGTAAAACCTAACTCTACTACCGTTTGCAGCTTGC TTCGCGCTTGTGCAGGCCCATCTTTGTTAGAGAAAGGCGAAGAGGTACACTGCTTCTGTATAAGACTTGGGTATGTGGAT GATGTATATATAGCCACAGCCCTAATTGACATGTATAGTAAGGGAGGAAAACTAAAAGTAGCCTATGAGGTTTTCAGGAA AATTAAAGAGAAAACACTACCATGTTGGAATTGCATGATGATGGGGTATGCCATTTATGGCCATGGCAAAGAGGTAATTA CTCTTTTTGACAAGATGTGTAAAACAGGTATTAGACCTGATGCTATAACCTTCACCGCTCTTCTATCTGGCTGCAAGAAT TCATGTTTGGTTGATGAAGGGTGGAAGTACTTTGACAGCATGCAGACAGATTACAACATTGTTCCGAGAATCGAGCACTA CACTTGCATGGTAGACCTTCTTGGGAAAGCTGGTTTTCTTGATGAAGCTTTGGATTTCATCCACACCATGCCATTTAAGC CAGATGCCAGTATTTGGGGTGCTCTTCTTGCATCCTGTAGAATTCACAAAAACATTCAGCTAGCAGAGATTGCAGCTAGG AATCTTTTCAAATTGGAACCTTATAATTCTGCTAACTACGTGCTGATGATGAATATATATTCCGACTTAAATAGATGGGA CGATGTGGAGCGTCTTAAAGATTCAATGGCTGTCCAGGAGATTAAATGCCCCAATGTCTGGAGCTGGACACAAATTAACC AGACCATTCATGTGTTCTCCACAGATAGGACATCACATCCAGAGGAAGGGAAAATATATTTTGAGTTATATCAATTAATT TCGGAAATGCGAAAGCTGGGATATGTACCTGATGTTAATTGTGTATATCAGAATATTGACGACAATGAGAAGGAGAAGGT TCTGCTCAGTCACACTGAGAAGCTGGCTATGACTTATGGACTGATGAAAACAAAAGGTGAATCACCAATTAGGGTAGTTA AGAACACGAGAATTTGTCATGACTGTCATACAGTAGCAAAGTATGTTTCCTTGGCTCGAAATCGCGAGATTTTCCTCAGA GATGGTGGCCGTTTTCACCATTTTAGAAATGGGAAATGCTCCTGCAATGATCGGTGGTAGTAAGAAACATTGGCAGAAAG CTGAAGTATTTTCTACTGTTATATTCTTGTGTATCAGTGGAGGGAGTGTTTTCATGAAGGAAATACAATTCTTAGTTAAG GAATGACTTTGTTACTTGGGAATCAAACTCTCTTTGAAAAACACTTTTTCAGAAATTGCAATCTTCACCTGAAGTACTTC ACTTTTCTGCAAGTCACAGTATGAAAATTTTGGTGGCAGATACATTACTAGGGGATCAGCATCACCAACAAAATGCCTTA GCTCCGAATGCAAATGTAAATTATCACACTCTACAACATGGTCCCGAGATAACAGTTTACAGTTCTGTGCTACTTGTGCA ACAAGTTTAAGTACTTCCAGGTTTAACCATTGATAAGAGTCGCATCTGTTCTGCTTCATCAGCAAAAGAAAAGTGAACTC AAGATTGCTTATAGAAAATACATTTCATATATAGCAATCCATCTTGACAGAAAGAAGAGTCTTATATTTCATTGAACTTG TGTCTAGATGCTATGATTATTACGTTTTTTTAATATCCTCTTCACTATCTTTGTCAGATACACAACGCACAATGCATGTA TACAGCTATTTCCACAGATATAATATAGAAGCTGAGTATGATAAAAATTAGAACTTTTTCACACCTATTTTTTACACTCG TACTTATCTATATGTCTATTTTTCT
CDS sequence (LotjaGi3g1v0393700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAATTTTGCATCTTCTCTCAGAACCAAAGCTTTATGGATAAGCTAGCTCCCTTTCATAATCTTAATCCTTATACTGC TCACATGCTACCAAAATGCCATTCACCAACTTCAGTTTCTCTTGGATTGTCAGATACTCAGTTCTTTTCTTCAGCTCAAT TTTCCACACCAAGATTTTCTCCTTCCTTTCAGTCTTTGGATGAGTTGGGTGGGATAAGGACTTTGAATTCTGTCAGGGAA TTGCATGCAAAGATGTTGAAGATCCCAAATAAGAGGAGCATGACAACAATGGATGGAAGCTTGATAAGATACTATTTGGA GTTTGGAGATTTCATGTCAGCAATAAAGGTGTTCTTTGTGGGTTTTGCTAAGAATTATCATCTCTGCAATTCTTTTCTGG ATGAATTTGGAAGTTCTGGAGGTGACCCACATCAGATTCTGGAGGTCTTCAAGGAACTGCATAGTAAAGGTGTGGAATTT GATAGCAGAGCTCTCACTGTTGTTCTGAAAATTTGCATGAGTTTGATGGATTTGTGGGCTGGGTTGGAAATTCATGCTTG TTTGGTCAAGAGAGGGTTCCATGTTGATGTACATTTGAGTTGTGCATTGATCAATTTCTATGAGAAGTGCTGGGGTATAG ACAAGGCAAATCAAGTGTTTGATGAAACTTCTCACCAAGAAGATTTCTTGTGGAATACAGTAATTATAGCAAACTTGAGG AGTGAAAGATATGGGAAGGCCTTAGAGCTATTCCGTAGCATGCAGTCAGCTTCTGCCAAAGCCACTGGTGGTACCATTGT CAAGCTGCTGCAGGCATGTGGAAAACTGAGAGCTCTCAATGAAGGAAAGCAGATTCATGGGTACGTTTTAAGATCTGGAC TAGTGTCAAATACGTCGATTTGCAATACTATAATTAGCATGTACTCTAGAAACAATAGACTCAAACTAGCTAAAGCAGTT TTTGATTCAATGGAGGATCCTAACTTATCATCTTGGAACTCAATAATTTCGAGTTATGCGATTGGTGGCTGCTTGAATGA TGCATGGGACACTTTAAAAGAAATGGAGCATTCCAGCATTAAACCAGACATTGTAACATGGAATTCTCTTTTGTCTGGCC ATCTTCTTCAGGGGTCATATGAAATGGTTCTCTCCAGTTTACGGAGCCTGCGAAGTGCAGGCTACAAGCCAGATTCATGT TCTATAACTAGTGCCCTACAAGCAGTTATTGAATTGGGTTGCTTTAAATTAGGTAAAGAAATCCATGGTTACACAATTAG AAGTATGCTTAACAGTGATGTCTATGTCAGTACCTCATTGGTGGATATGTATGTTAAGAATGATTGTTTAGGTAAAGCTC ATGCAGTGTTCCTTCATGCAAAGAACAAAAACATTTTTGCCTGGAACTCATTGATATCTGGTTACTCCTACAAGGGCCTG TTCAGTGATGCTGAAAAACTATTGAACCAGATGGAGGAGGAAGGGATGAAACCTGATCTGGTGACATGGAATGGTTTGGT TTCAGGTTATTCATTGTGGGGCTGTAATGAGGAAGCTTTTGCTGTGATCAATCGAATCAAGAGTTCAGGACTTCGTCCTA ATGTCGTGTCGTGGACCGCTATGATCTCAGGATGTTCTCAAAATGAGAAGTATATGGATGCCCTACAGCTTTTCAGCCAA ATGCAAGCAGAAAATGTAAAACCTAACTCTACTACCGTTTGCAGCTTGCTTCGCGCTTGTGCAGGCCCATCTTTGTTAGA GAAAGGCGAAGAGGTACACTGCTTCTGTATAAGACTTGGGTATGTGGATGATGTATATATAGCCACAGCCCTAATTGACA TGTATAGTAAGGGAGGAAAACTAAAAGTAGCCTATGAGGTTTTCAGGAAAATTAAAGAGAAAACACTACCATGTTGGAAT TGCATGATGATGGGGTATGCCATTTATGGCCATGGCAAAGAGGTAATTACTCTTTTTGACAAGATGTGTAAAACAGGTAT TAGACCTGATGCTATAACCTTCACCGCTCTTCTATCTGGCTGCAAGAATTCATGTTTGGTTGATGAAGGGTGGAAGTACT TTGACAGCATGCAGACAGATTACAACATTGTTCCGAGAATCGAGCACTACACTTGCATGGTAGACCTTCTTGGGAAAGCT GGTTTTCTTGATGAAGCTTTGGATTTCATCCACACCATGCCATTTAAGCCAGATGCCAGTATTTGGGGTGCTCTTCTTGC ATCCTGTAGAATTCACAAAAACATTCAGCTAGCAGAGATTGCAGCTAGGAATCTTTTCAAATTGGAACCTTATAATTCTG CTAACTACGTGCTGATGATGAATATATATTCCGACTTAAATAGATGGGACGATGTGGAGCGTCTTAAAGATTCAATGGCT GTCCAGGAGATTAAATGCCCCAATGTCTGGAGCTGGACACAAATTAACCAGACCATTCATGTGTTCTCCACAGATAGGAC ATCACATCCAGAGGAAGGGAAAATATATTTTGAGTTATATCAATTAATTTCGGAAATGCGAAAGCTGGGATATGTACCTG ATGTTAATTGTGTATATCAGAATATTGACGACAATGAGAAGGAGAAGGTTCTGCTCAGTCACACTGAGAAGCTGGCTATG ACTTATGGACTGATGAAAACAAAAGGTGAATCACCAATTAGGGTAGTTAAGAACACGAGAATTTGTCATGACTGTCATAC AGTAGCAAAGTATGTTTCCTTGGCTCGAAATCGCGAGATTTTCCTCAGAGATGGTGGCCGTTTTCACCATTTTAGAAATG GGAAATGCTCCTGCAATGATCGGTGGTAG
Protein sequence (LotjaGi3g1v0393700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKFCIFSQNQSFMDKLAPFHNLNPYTAHMLPKCHSPTSVSLGLSDTQFFSSAQFSTPRFSPSFQSLDELGGIRTLNSVRE LHAKMLKIPNKRSMTTMDGSLIRYYLEFGDFMSAIKVFFVGFAKNYHLCNSFLDEFGSSGGDPHQILEVFKELHSKGVEF DSRALTVVLKICMSLMDLWAGLEIHACLVKRGFHVDVHLSCALINFYEKCWGIDKANQVFDETSHQEDFLWNTVIIANLR SERYGKALELFRSMQSASAKATGGTIVKLLQACGKLRALNEGKQIHGYVLRSGLVSNTSICNTIISMYSRNNRLKLAKAV FDSMEDPNLSSWNSIISSYAIGGCLNDAWDTLKEMEHSSIKPDIVTWNSLLSGHLLQGSYEMVLSSLRSLRSAGYKPDSC SITSALQAVIELGCFKLGKEIHGYTIRSMLNSDVYVSTSLVDMYVKNDCLGKAHAVFLHAKNKNIFAWNSLISGYSYKGL FSDAEKLLNQMEEEGMKPDLVTWNGLVSGYSLWGCNEEAFAVINRIKSSGLRPNVVSWTAMISGCSQNEKYMDALQLFSQ MQAENVKPNSTTVCSLLRACAGPSLLEKGEEVHCFCIRLGYVDDVYIATALIDMYSKGGKLKVAYEVFRKIKEKTLPCWN CMMMGYAIYGHGKEVITLFDKMCKTGIRPDAITFTALLSGCKNSCLVDEGWKYFDSMQTDYNIVPRIEHYTCMVDLLGKA GFLDEALDFIHTMPFKPDASIWGALLASCRIHKNIQLAEIAARNLFKLEPYNSANYVLMMNIYSDLNRWDDVERLKDSMA VQEIKCPNVWSWTQINQTIHVFSTDRTSHPEEGKIYFELYQLISEMRKLGYVPDVNCVYQNIDDNEKEKVLLSHTEKLAM TYGLMKTKGESPIRVVKNTRICHDCHTVAKYVSLARNREIFLRDGGRFHHFRNGKCSCNDRW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 64 | 231 | 168 | 1.2E-11 | ||
| PANTHER | 99 | 285 | 187 | 7.7E-125 | – | |
| ProSiteProfiles | 125 | 160 | 36 | 7.794 | ||
| ProSiteProfiles | 161 | 195 | 35 | 5.283 | ||
| ProSiteProfiles | 227 | 261 | 35 | 7.881 | ||
| Pfam | 230 | 256 | 27 | 0.0077 | ||
| Gene3D | 232 | 389 | 158 | 4.6E-34 | ||
| ProSiteProfiles | 262 | 296 | 35 | 5.974 | ||
| PANTHER | 265 | 378 | 114 | 7.7E-125 | – | |
| ProSiteProfiles | 297 | 327 | 31 | 8.396 | ||
| Pfam | 300 | 325 | 26 | 0.0028 | ||
| TIGRFAM | 300 | 325 | 26 | 2.7E-4 | ||
| Pfam | 327 | 373 | 47 | 1.3E-8 | ||
| ProSiteProfiles | 328 | 362 | 35 | 10.841 | ||
| TIGRFAM | 331 | 364 | 34 | 1.3E-6 | ||
| ProSiteProfiles | 363 | 397 | 35 | 9.898 | ||
| PANTHER | 366 | 533 | 168 | 7.7E-125 | – | |
| Gene3D | 390 | 492 | 103 | 7.0E-7 | ||
| ProSiteProfiles | 433 | 463 | 31 | 5.886 | ||
| Pfam | 463 | 510 | 48 | 2.2E-11 | ||
| ProSiteProfiles | 464 | 498 | 35 | 12.902 | ||
| TIGRFAM | 467 | 499 | 33 | 4.7E-8 | ||
| Gene3D | 493 | 636 | 144 | 5.0E-34 | ||
| ProSiteProfiles | 499 | 533 | 35 | 10.643 | ||
| TIGRFAM | 501 | 535 | 35 | 1.6E-4 | ||
| PANTHER | 504 | 591 | 88 | 7.7E-125 | – | |
| Pfam | 533 | 581 | 49 | 2.8E-14 | ||
| ProSiteProfiles | 534 | 568 | 35 | 12.068 | ||
| TIGRFAM | 536 | 569 | 34 | 6.1E-8 | ||
| ProSiteProfiles | 569 | 603 | 35 | 5.7 | ||
| PANTHER | 575 | 799 | 225 | 7.7E-125 | – | |
| ProSiteProfiles | 604 | 634 | 31 | 8.594 | ||
| Pfam | 609 | 634 | 26 | 0.0044 | ||
| ProSiteProfiles | 635 | 669 | 35 | 9.723 | ||
| Gene3D | 637 | 769 | 133 | 6.9E-27 | ||
| Pfam | 638 | 681 | 44 | 1.0E-9 | ||
| TIGRFAM | 638 | 671 | 34 | 5.1E-6 | ||
| ProSiteProfiles | 670 | 700 | 31 | 8.024 | ||
| TIGRFAM | 672 | 705 | 34 | 5.3E-4 | ||
| ProSiteProfiles | 706 | 736 | 31 | 7.125 | ||
| Pfam | 709 | 733 | 25 | 0.0089 | ||
| ProSiteProfiles | 772 | 806 | 35 | 7.344 | ||
| Pfam | 811 | 932 | 122 | 1.7E-33 | ||
| ProSiteProfiles | 818 | 853 | 36 | 5.831 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi3g1v0393700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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