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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0394600 |
Transcript ID | LotjaGi3g1v0394600.1 |
Related isoforms 4 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Cyclic nucleotide-gated ion channel-like protein; TAIR: AT5G53130.1 cyclic nucleotide gated channel 1; Swiss-Prot: sp|O65717|CNGC1_ARATH Cyclic nucleotide-gated ion channel 1; TrEMBL-Plants: tr|K7KZV3|K7KZV3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0394600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:79441103..79446489) extracted from Lotus japonicus Gifu genome v1.2.
AGAATTATACTAATACAGTAATACCTCTTTCTACATTCGTATGGATTATAGTACTATTTGTCGTTTGCTAAGCTGACTTA GAGTCTTCTCTCACATTTTCTACCCAAACAAAGCTGTATCCTTTATGTCTTCCATCACTCTCAAAGTTGCTTTGCTTGAA CAGTACTGGCCATAAAAATAAAAATAAAAAATCTTTCTTCTTGATTAAGATAAATTGCATGTAACATTTTTTAGTTTTGA ACTCTTCTGCTCTCTCTGTTTGGTTCCTGGGTAAGGAAAATAAAGGACTAAGGTATTTTCTCACTGGATGTGGTAGTAGC TTAATTAATCATGTCTTCAAAGGGACAGAAATTTGTGAGGTTTGTTATCTCAATCCTGATTTTTCTCAGTAATTCATTTC CTTTTGTACCAGAAAAAAATTGTTCAATTCCTTTTACTAAATTTTTATTGATTTTTTGTTTAATATGTGACAAATTGGCA CCAAACAAAGAAATTCATAATTCAAATATGATCATGTTACTAAGAATGCCAAAATAGTTGAACTGATGATAAACTATGTG TAGTTTTCAAAGTTAATTGTCAATTATGGGTTGAGAACAAGATTACTAGCTTCTCTAATTGACTAACTGTGGTTCAAACT AACTTCACTTTTGTTGTCAATGATGGAAACTATAGATGCTAAATTGCTAATATATACTAATATACCTGATTCTTATTTAA AAATGCTTAACTGAGTTTACTATGTCCAGGTTTGAAGATTGGAGGTCAGAGTCATCTCTAAGTATTGAGCAGAAAGATTC TACTAGTGATGGATTTCTTAAAAGAAAAGTTAAATCAAGTCCAGTAAATGATGGTTCAACAGAAAAACTGGCTTCTAGGT GCAAGGTGCTTGATCCACAAGGTTCACTACTTCAGAAATGGAACAAAATTTTTGTAATAACCTGTGTGATGGCAATCTCT GTGGACCCTTTGTTCTTTTACATCCCTGTGATTGATGACAAGAGGAAGTGCCTTGATTTGGATGGAGCACTGAAGATTAC TGCTGGTGTTTTTCGCACGTTCTTTGATCTTTTCTACATTCTTCGCATCATCTTTCAGTTTCGAACCGGGTTCATTGCCC CTTCTTCACGTGTATTTGGAAGGGGTGAGCTGGTTGATGATCCTCGAGCCATAGTGATGAGATACTTGAGTTCTCACTTC ATCATTGACATTCTATCAATTATTCCACTTCCTCAGGTATCTTAATCTCCTCTTTTACTCATTCTCAAGTCAGAAATGCA TTTTTATATACCATCAAAAGTCAATTGAGTGTTAAATTACTCTTTAACCATATTTTACACAGAGGCATTAGGATGAATTC GGATCCTCTTCTGGACTGCAGCCTTTGCAGCAACAAAATGACTAAGTGTTTGAAAGTGTTGACAAATTTAACTTTTTTTA ATCAATCTCAACCATTTAATGCCCAGGAAAATTGGAGAGCATTACACTCCTTTTGGTATTTTTCCCATCATGAATACCAT GTAGTCAAAATGAAGGAAACTTCTATTACAATTTCTAGTTCAATTTGATGTGGAAGACATGCTTTTATGTTGTTTTAACA CTTATAATGTGTTCTTAGATGGTCATTTTAGCTCTTATTCCAATCCCAAAATGCTCAGCTCCATATCTGGAAAAGGATTT GTTGAAGTATACAGTAATAGCTCAGTATATACCAAGACTTTTGAGGATCTATCCACTGTTCAAAGAAGTAACAAGCACTT CTGGCATATTGACTGAGACAGCCTGGGCTGGAGCTGCTTATAATCTTTTTCTCTATATGCTGGGAAGTCATGTAAGCTGA TTTTCTTATATATTCAAAGAACCTCATCTTGTTCCTAGTTATCATGCTAAGTCATGGCAAACAAGCCAAGTATATATAAT GTGACATACCAGGTTGTTGGAGCTTTCTGGTATCTGTTTTCAGTGGAATCAGAGGTGCGGTGCTGGCGCCGGCTCTTGAA GAATACTACATACTCTCATGATTCCTACCTGAGCTGTGGACAAGGCAATCCCATTGTTCTATCGCTTCTCAATAGCTCTA CTTCTTGCCCTTACATTGATCCTGATGACATTGAAGACCCAACAGTTTACAATTTTGGGATATTTATAGAAGCTCTAAAG TCTCGCGTGGTGGAGTCGACTGCTGACTTTCATCAGAAGTTCTTCTACTGCTTTTGGTGGGGTTTGAGAAATGTAAGGTA GGTGAATGATCTTCTCTTTTCTTGAATCCATATGTAAGGTTCAAATTCTAGTCCTTTGGCACTTCTATATTCTTGTGTTC TTAATTTTGTTCGGAATGTACCTGTAGACTTATCATTAGTTAGTGTTCGTAACATCTTATCAAGGAAAGCTCAAACAGCA ATCTATTTAATGATGGAGGCTAGAAGCTTTTCAAAAGTCAGAATTTTTGTTGCTTTTTGCAGCTCTGTTGGGCAAAACCT CAAGACAAGTACTTATGTTGGAGAGATATTCTTTGCTATCTTCATTGCCACCTTTGGATTGGTGCTATTTGCACTACTTA TTGGAAACATGCAGGTAAATCTTGGCCAGGACTATGAGATGAGATCATAGACATAACTAGGATCTTGCATATATGTGTCA CTAATCACACTTACCTAGTCATAGATATAGAGCCTGTTTGGTTGCAGACCAAAGAACACTTATTGGAGCTTATCCAGCGC TTATTTTAGTCGATAAAATCCAATAAATGCTTTTTAGTCTGTGTCAAATGGGTCTATAGTAAAATTCATGAGTCCTTAGG CAAGTTAATGGTGTTTGTGTTGGAGTAGGTACTAAGCATTCAAAGGAACAGGTTTTAAACCTTAAATAGGCAAACTACAC TAACATCAAATCACTGATACCATGCCTTCCATTGGAAACCAAATTTTCATCAATTGTGAGTGTTAAAACAGCCAACTATC TGACACCCCTCTTGTTTATTGAATGCATGGGTTGTGTTGATCATTGTCACAGAAATTTCTACAATCTACAACTGTTAGAG TTGAAGAGATGAGAATCAAAAGGCGGGACGCAGAACAGTGGATGTGCCACCGTATGCTACCTGACTTCTTGAAGGAAAGA ATTAGAAGGTATGAACAATACAAATGGCAAGAAAATAGAGGTGTTGAAGAGGAGACGTTAATTCGCAACCTCCCCAAAGA TCTTAGAAGGGACATCAGGCGTCATCTTTGCTTAGATTTACTTAAAAAAGTGGGTATCATACTTAACGATCTCCTAATTT GGTTGGTTTTTCTTGGTCCTCCAACCTATGCTCAAGTATGTATAATGAACATTTTATGCTCTTGTTGTTTTAGGTGCCAA TGTTTGAGAACATGGATAACCAATTGTTGGATGCAATGTGTGATAGACTAAAGCCAGTCCTTTACACAGAGAAAAGTTCC ATAGTTCGTGAAGGAGATCCAGTTGATGAAATGCTCTTCATTATGCGTGGAAAAATTGCTACTGCCACAACAAATGGTGG AAGAACTGGTTTCTTCAACTCCTCTGTACTAAAGGCCGGTGACTTCTGTGGAGAAGAGCTTCTAACATGGGCCTTGGATC CAAACACCTCCTCAAACCTACCCATTTCAACTAGAACAGTGGAAACTATTTCAGAAGTTGAAGCCTTTGCTCTCATGCCT GATGACTTGAAGTTTGTTACTTCCCAATTTCGACGCCTTATAAACAGCAACCAACTCCAGCACACTTTCAGGCAAGGCTT CATACTTTCACCTTTGGTAATGCATAACTAGAATTTTGTGGAAAAAGTGTCAACACTGTAGGAAACAAGGTGCATATTAG ATCATCTAAAACATTGACCTTACATTCTAAGAGTAGTAAGCTTAGATCATCCAATCAAATTCATTATAACAATGCCAGAT TGGTAGACAATCAACAATCATGTTTTTATTTTTGAAAAAAATCATGTTGAGAAGTCTCACGTTAACTAGAGATATGACCA AATAATTTGTTGTATAGGGTAGAGCAATCCTCACCCAAGAGCTAGTGTTGGAGTATAGTTAGTAGGTCTAACCTGAAATT TAAGATGGTTTTAGAGTCTATCTTAAATCCAACAAAATTTCACGCTTCATATGTCCAACCTGAGAGAGTGTGCTAAGAGA TCTCACATTATCTAGAGATATGGCCTAATAAATCCTTATGTAAGGTACAACAATCCTCACCCCAGCTAACTTTTGGAGTA GGATAAGGTCAAACCCCAAATTTAAGACTTGTCAAACACAAATGAGCAAGAATAGCCTGTTAGGCATATCCAATTAGACC TATGAGAAAATATGAGACTATGGTAAAGATCTTATAATAAATCATATCTTAAAATGAAAAAAGAAGAAAGAAAATGTGCT TGACAACCTCATTGAATGAGCACAATGTTTGAGCAGGTTCTACTCCTTACAATGGAGGACATGGGCTGCCTGTTTCATAC AAGCAGCTTGGCGTAGATGCAGGAAAAAGAAGACTGAGAGGTTATTACGTGAAGCAGAAGAAAGGCTAGATGGTTTTGAG AGTGAGGCAGGGTCCTCACCAAGCTTTGTATCCACCGTATTTGCATCAAGGTTTGTATCGAATGTGCGGCCCATGCGAAG TGGCAAACGCATGCGCAACAAAATGCCACAGACACAGAGACTACTACCCTTGCTGCCTCAGAAGCCATCTGATTTCACTG CACAAAAAGACTAGGGGTGTTGTAGACTGTAATTTTGATTGCAAGTTTAATTTGTTTTATTGGCACAACGAAGAAACTTA TCACATGTGGGGCTCAAGAGCAATATATATGTTCGTTGAAAAATTGTGTAATGTGAATTAGAGTACAATGGTATTATTGG ATTGCAGAAATTGGTGTGTGCAATCGAAGATGGAAGAGACAGTTTGATGAGAAAGAGAACTATCGTGAAGCGTATAAATA AGGAATAATATAGAAAAGCTTAGGGCCTTGAGAGGCCACATACAAGTAACCTCATTTTTAAAACACTTCATTTCCACTTC TTTTTGTTTCTATCTCTCTCCTCTTAATATCTATCACATCTTATACTTTCTCTCTCTTACTTTTCCTTTTCTTCCTATCT CTCTCATCATTCCACCTCAAAAGAGAGGTGTGTAAGTAACATTACTCTACTCAAATTCCTTAATATAAGAATCAATGTTT GGGGTAGGACAATAGTATTCTTGTGTTAGGCTATCTGGAAGTATGACTCTGTGTAATTTGTATTTTGTAATTTACTTTTT GTACTCCTGTAGGTTCTAGTCTTTCTTTGACTAGCTCCCCTCCTTTGTATTCGGGTTAGCACCCCTTGTGCTAGTGGTCA AAAAAAAAAAAGAATCAATGATCCCCC
CDS sequence (LotjaGi3g1v0394600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTCAAAGGGACAGAAATTTGTGAGGTTTGAAGATTGGAGGTCAGAGTCATCTCTAAGTATTGAGCAGAAAGATTC TACTAGTGATGGATTTCTTAAAAGAAAAGTTAAATCAAGTCCAGTAAATGATGGTTCAACAGAAAAACTGGCTTCTAGGT GCAAGGTGCTTGATCCACAAGGTTCACTACTTCAGAAATGGAACAAAATTTTTGTAATAACCTGTGTGATGGCAATCTCT GTGGACCCTTTGTTCTTTTACATCCCTGTGATTGATGACAAGAGGAAGTGCCTTGATTTGGATGGAGCACTGAAGATTAC TGCTGGTGTTTTTCGCACGTTCTTTGATCTTTTCTACATTCTTCGCATCATCTTTCAGTTTCGAACCGGGTTCATTGCCC CTTCTTCACGTGTATTTGGAAGGGGTGAGCTGGTTGATGATCCTCGAGCCATAGTGATGAGATACTTGAGTTCTCACTTC ATCATTGACATTCTATCAATTATTCCACTTCCTCAGATGGTCATTTTAGCTCTTATTCCAATCCCAAAATGCTCAGCTCC ATATCTGGAAAAGGATTTGTTGAAGTATACAGTAATAGCTCAGTATATACCAAGACTTTTGAGGATCTATCCACTGTTCA AAGAAGTAACAAGCACTTCTGGCATATTGACTGAGACAGCCTGGGCTGGAGCTGCTTATAATCTTTTTCTCTATATGCTG GGAAGTCATGTTGTTGGAGCTTTCTGGTATCTGTTTTCAGTGGAATCAGAGGTGCGGTGCTGGCGCCGGCTCTTGAAGAA TACTACATACTCTCATGATTCCTACCTGAGCTGTGGACAAGGCAATCCCATTGTTCTATCGCTTCTCAATAGCTCTACTT CTTGCCCTTACATTGATCCTGATGACATTGAAGACCCAACAGTTTACAATTTTGGGATATTTATAGAAGCTCTAAAGTCT CGCGTGGTGGAGTCGACTGCTGACTTTCATCAGAAGTTCTTCTACTGCTTTTGGTGGGGTTTGAGAAATGTAAGCTCTGT TGGGCAAAACCTCAAGACAAGTACTTATGTTGGAGAGATATTCTTTGCTATCTTCATTGCCACCTTTGGATTGGTGCTAT TTGCACTACTTATTGGAAACATGCAGAAATTTCTACAATCTACAACTGTTAGAGTTGAAGAGATGAGAATCAAAAGGCGG GACGCAGAACAGTGGATGTGCCACCGTATGCTACCTGACTTCTTGAAGGAAAGAATTAGAAGGTATGAACAATACAAATG GCAAGAAAATAGAGGTGTTGAAGAGGAGACGTTAATTCGCAACCTCCCCAAAGATCTTAGAAGGGACATCAGGCGTCATC TTTGCTTAGATTTACTTAAAAAAGTGCCAATGTTTGAGAACATGGATAACCAATTGTTGGATGCAATGTGTGATAGACTA AAGCCAGTCCTTTACACAGAGAAAAGTTCCATAGTTCGTGAAGGAGATCCAGTTGATGAAATGCTCTTCATTATGCGTGG AAAAATTGCTACTGCCACAACAAATGGTGGAAGAACTGGTTTCTTCAACTCCTCTGTACTAAAGGCCGGTGACTTCTGTG GAGAAGAGCTTCTAACATGGGCCTTGGATCCAAACACCTCCTCAAACCTACCCATTTCAACTAGAACAGTGGAAACTATT TCAGAAGTTGAAGCCTTTGCTCTCATGCCTGATGACTTGAAGTTTGTTACTTCCCAATTTCGACGCCTTATAAACAGCAA CCAACTCCAGCACACTTTCAGGCAAGGCTTCATACTTTCACCTTTGGTAATGCATAACTAG
Protein sequence (LotjaGi3g1v0394600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSKGQKFVRFEDWRSESSLSIEQKDSTSDGFLKRKVKSSPVNDGSTEKLASRCKVLDPQGSLLQKWNKIFVITCVMAIS VDPLFFYIPVIDDKRKCLDLDGALKITAGVFRTFFDLFYILRIIFQFRTGFIAPSSRVFGRGELVDDPRAIVMRYLSSHF IIDILSIIPLPQMVILALIPIPKCSAPYLEKDLLKYTVIAQYIPRLLRIYPLFKEVTSTSGILTETAWAGAAYNLFLYML GSHVVGAFWYLFSVESEVRCWRRLLKNTTYSHDSYLSCGQGNPIVLSLLNSSTSCPYIDPDDIEDPTVYNFGIFIEALKS RVVESTADFHQKFFYCFWWGLRNVSSVGQNLKTSTYVGEIFFAIFIATFGLVLFALLIGNMQKFLQSTTVRVEEMRIKRR DAEQWMCHRMLPDFLKERIRRYEQYKWQENRGVEEETLIRNLPKDLRRDIRRHLCLDLLKKVPMFENMDNQLLDAMCDRL KPVLYTEKSSIVREGDPVDEMLFIMRGKIATATTNGGRTGFFNSSVLKAGDFCGEELLTWALDPNTSSNLPISTRTVETI SEVEAFALMPDDLKFVTSQFRRLINSNQLQHTFRQGFILSPLVMHN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 69 | 69 | - | – | |
PANTHER | 6 | 594 | 589 | 0.0 | – | |
PANTHER | 6 | 594 | 589 | 0.0 | – | |
SUPERFAMILY | 58 | 386 | 329 | 2.09E-29 | – | |
Pfam | 67 | 392 | 326 | 1.6E-34 | ||
TMHMM | 70 | 91 | 22 | - | – | |
Phobius | 70 | 90 | 21 | - | – | |
Phobius | 91 | 101 | 11 | - | – | |
Phobius | 102 | 121 | 20 | - | – | |
TMHMM | 106 | 125 | 20 | - | – | |
Phobius | 122 | 159 | 38 | - | – | |
TMHMM | 159 | 181 | 23 | - | – | |
Phobius | 160 | 181 | 22 | - | – | |
Phobius | 182 | 230 | 49 | - | – | |
Phobius | 231 | 252 | 22 | - | – | |
TMHMM | 231 | 253 | 23 | - | – | |
Phobius | 253 | 359 | 107 | - | – | |
TMHMM | 356 | 378 | 23 | - | – | |
Phobius | 360 | 379 | 20 | - | – | |
Phobius | 380 | 606 | 227 | - | – | |
Gene3D | 388 | 455 | 68 | 1.9E-13 | – | |
SUPERFAMILY | 393 | 580 | 188 | 1.3E-33 | ||
Gene3D | 462 | 582 | 121 | 7.5E-42 | ||
CDD | 464 | 587 | 124 | 5.8098E-15 | ||
SMART | 464 | 595 | 132 | 4.2E-12 | ||
ProSiteProfiles | 464 | 548 | 85 | 14.017 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Ion channel activity | Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size). | ||
Biological process | Ion transport | The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi3g1v0394600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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