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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0394600 |
| Transcript ID | LotjaGi3g1v0394600.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclic nucleotide-gated ion channel-like protein; TAIR: AT5G53130.1 cyclic nucleotide gated channel 1; Swiss-Prot: sp|O65717|CNGC1_ARATH Cyclic nucleotide-gated ion channel 1; TrEMBL-Plants: tr|K7KZV3|K7KZV3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0394600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:79441242..79446154) extracted from Lotus japonicus Gifu genome v1.2.
CTCAAAGTTGCTTTGCTTGAACAGTACTGGCCATAAAAATAAAAATAAAAAATCTTTCTTCTTGATTAAGATAAATTGCA TGTAACATTTTTTAGTTTTGAACTCTTCTGCTCTCTCTGTTTGGTTCCTGGGTAAGGAAAATAAAGGACTAAGGTATTTT CTCACTGGATGTGGTAGTAGCTTAATTAATCATGTCTTCAAAGGGACAGAAATTTGTGAGGTTTGTTATCTCAATCCTGA TTTTTCTCAGTAATTCATTTCCTTTTGTACCAGAAAAAAATTGTTCAATTCCTTTTACTAAATTTTTATTGATTTTTTGT TTAATATGTGACAAATTGGCACCAAACAAAGAAATTCATAATTCAAATATGATCATGTTACTAAGAATGCCAAAATAGTT GAACTGATGATAAACTATGTGTAGTTTTCAAAGTTAATTGTCAATTATGGGTTGAGAACAAGATTACTAGCTTCTCTAAT TGACTAACTGTGGTTCAAACTAACTTCACTTTTGTTGTCAATGATGGAAACTATAGATGCTAAATTGCTAATATATACTA ATATACCTGATTCTTATTTAAAAATGCTTAACTGAGTTTACTATGTCCAGGTTTGAAGATTGGAGGTCAGAGTCATCTCT AAGTATTGAGCAGAAAGATTCTACTAGTGATGGATTTCTTAAAAGAAAAGTTAAATCAAGTCCAGTAAATGATGGTTCAA CAGAAAAACTGGCTTCTAGGTGCAAGGTGCTTGATCCACAAGGTTCACTACTTCAGAAATGGAACAAAATTTTTGTAATA ACCTGTGTGATGGCAATCTCTGTGGACCCTTTGTTCTTTTACATCCCTGTGATTGATGACAAGAGGAAGTGCCTTGATTT GGATGGAGCACTGAAGATTACTGCTGGTGTTTTTCGCACGTTCTTTGATCTTTTCTACATTCTTCGCATCATCTTTCAGT TTCGAACCGGGTTCATTGCCCCTTCTTCACGTGTATTTGGAAGGGGTGAGCTGGTTGATGATCCTCGAGCCATAGTGATG AGATACTTGAGTTCTCACTTCATCATTGACATTCTATCAATTATTCCACTTCCTCAGGTATCTTAATCTCCTCTTTTACT CATTCTCAAGTCAGAAATGCATTTTTATATACCATCAAAAGTCAATTGAGTGTTAAATTACTCTTTAACCATATTTTACA CAGAGGCATTAGGATGAATTCGGATCCTCTTCTGGACTGCAGCCTTTGCAGCAACAAAATGACTAAGTGTTTGAAAGTGT TGACAAATTTAACTTTTTTTAATCAATCTCAACCATTTAATGCCCAGGAAAATTGGAGAGCATTACACTCCTTTTGGTAT TTTTCCCATCATGAATACCATGTAGTCAAAATGAAGGAAACTTCTATTACAATTTCTAGTTCAATTTGATGTGGAAGACA TGCTTTTATGTTGTTTTAACACTTATAATGTGTTCTTAGATGGTCATTTTAGCTCTTATTCCAATCCCAAAATGCTCAGC TCCATATCTGGAAAAGGATTTGTTGAAGTATACAGTAATAGCTCAGTATATACCAAGACTTTTGAGGATCTATCCACTGT TCAAAGAAGTAACAAGCACTTCTGGCATATTGACTGAGACAGCCTGGGCTGGAGCTGCTTATAATCTTTTTCTCTATATG CTGGGAAGTCATGTAAGCTGATTTTCTTATATATTCAAAGAACCTCATCTTGTTCCTAGTTATCATGCTAAGTCATGGCA AACAAGCCAAGTATATATAATGTGACATACCAGGTTGTTGGAGCTTTCTGGTATCTGTTTTCAGTGGAATCAGAGGTGCG GTGCTGGCGCCGGCTCTTGAAGAATACTACATACTCTCATGATTCCTACCTGAGCTGTGGACAAGGCAATCCCATTGTTC TATCGCTTCTCAATAGCTCTACTTCTTGCCCTTACATTGATCCTGATGACATTGAAGACCCAACAGTTTACAATTTTGGG ATATTTATAGAAGCTCTAAAGTCTCGCGTGGTGGAGTCGACTGCTGACTTTCATCAGAAGTTCTTCTACTGCTTTTGGTG GGGTTTGAGAAATGTAAGGTAGGTGAATGATCTTCTCTTTTCTTGAATCCATATGTAAGGTTCAAATTCTAGTCCTTTGG CACTTCTATATTCTTGTGTTCTTAATTTTGTTCGGAATGTACCTGTAGACTTATCATTAGTTAGTGTTCGTAACATCTTA TCAAGGAAAGCTCAAACAGCAATCTATTTAATGATGGAGGCTAGAAGCTTTTCAAAAGTCAGAATTTTTGTTGCTTTTTG CAGCTCTGTTGGGCAAAACCTCAAGACAAGTACTTATGTTGGAGAGATATTCTTTGCTATCTTCATTGCCACCTTTGGAT TGGTGCTATTTGCACTACTTATTGGAAACATGCAGGTAAATCTTGGCCAGGACTATGAGATGAGATCATAGACATAACTA GGATCTTGCATATATGTGTCACTAATCACACTTACCTAGTCATAGATATAGAGCCTGTTTGGTTGCAGACCAAAGAACAC TTATTGGAGCTTATCCAGCGCTTATTTTAGTCGATAAAATCCAATAAATGCTTTTTAGTCTGTGTCAAATGGGTCTATAG TAAAATTCATGAGTCCTTAGGCAAGTTAATGGTGTTTGTGTTGGAGTAGGTACTAAGCATTCAAAGGAACAGGTTTTAAA CCTTAAATAGGCAAACTACACTAACATCAAATCACTGATACCATGCCTTCCATTGGAAACCAAATTTTCATCAATTGTGA GTGTTAAAACAGCCAACTATCTGACACCCCTCTTGTTTATTGAATGCATGGGTTGTGTTGATCATTGTCACAGAAATTTC TACAATCTACAACTGTTAGAGTTGAAGAGATGAGAATCAAAAGGCGGGACGCAGAACAGTGGATGTGCCACCGTATGCTA CCTGACTTCTTGAAGGAAAGAATTAGAAGGTATGAACAATACAAATGGCAAGAAAATAGAGGTGTTGAAGAGGAGACGTT AATTCGCAACCTCCCCAAAGATCTTAGAAGGGACATCAGGCGTCATCTTTGCTTAGATTTACTTAAAAAAGTGGGTATCA TACTTAACGATCTCCTAATTTGGTTGGTTTTTCTTGGTCCTCCAACCTATGCTCAAGTATGTATAATGAACATTTTATGC TCTTGTTGTTTTAGGTGCCAATGTTTGAGAACATGGATAACCAATTGTTGGATGCAATGTGTGATAGACTAAAGCCAGTC CTTTACACAGAGAAAAGTTCCATAGTTCGTGAAGGAGATCCAGTTGATGAAATGCTCTTCATTATGCGTGGAAAAATTGC TACTGCCACAACAAATGGTGGAAGAACTGGTTTCTTCAACTCCTCTGTACTAAAGGCCGGTGACTTCTGTGGAGAAGAGC TTCTAACATGGGCCTTGGATCCAAACACCTCCTCAAACCTACCCATTTCAACTAGAACAGTGGAAACTATTTCAGAAGTT GAAGCCTTTGCTCTCATGCCTGATGACTTGAAGTTTGTTACTTCCCAATTTCGACGCCTTATAAACAGCAACCAACTCCA GCACACTTTCAGGCAAGGCTTCATACTTTCACCTTTGGTAATGCATAACTAGAATTTTGTGGAAAAAGTGTCAACACTGT AGGAAACAAGGTGCATATTAGATCATCTAAAACATTGACCTTACATTCTAAGAGTAGTAAGCTTAGATCATCCAATCAAA TTCATTATAACAATGCCAGATTGGTAGACAATCAACAATCATGTTTTTATTTTTGAAAAAAATCATGTTGAGAAGTCTCA CGTTAACTAGAGATATGACCAAATAATTTGTTGTATAGGGTAGAGCAATCCTCACCCAAGAGCTAGTGTTGGAGTATAGT TAGTAGGTCTAACCTGAAATTTAAGATGGTTTTAGAGTCTATCTTAAATCCAACAAAATTTCACGCTTCATATGTCCAAC CTGAGAGAGTGTGCTAAGAGATCTCACATTATCTAGAGATATGGCCTAATAAATCCTTATGTAAGGTACAACAATCCTCA CCCCAGCTAACTTTTGGAGTAGGATAAGGTCAAACCCCAAATTTAAGACTTGTCAAACACAAATGAGCAAGAATAGCCTG TTAGGCATATCCAATTAGACCTATGAGAAAATATGAGACTATGGTAAAGATCTTATAATAAATCATATCTTAAAATGAAA AAAGAAGAAAGAAAATGTGCTTGACAACCTCATTGAATGAGCACAATGTTTGAGCAGGTTCTACTCCTTACAATGGAGGA CATGGGCTGCCTGTTTCATACAAGCAGCTTGGCGTAGATGCAGGAAAAAGAAGACTGAGAGGTTATTACGTGAAGCAGAA GAAAGGCTAGATGGTTTTGAGAGTGAGGCAGGGTCCTCACCAAGCTTTGTATCCACCGTATTTGCATCAAGGTTTGTATC GAATGTGCGGCCCATGCGAAGTGGCAAACGCATGCGCAACAAAATGCCACAGACACAGAGACTACTACCCTTGCTGCCTC AGAAGCCATCTGATTTCACTGCACAAAAAGACTAGGGGTGTTGTAGACTGTAATTTTGATTGCAAGTTTAATTTGTTTTA TTGGCACAACGAAGAAACTTATCACATGTGGGGCTCAAGAGCAATATATATGTTCGTTGAAAAATTGTGTAATGTGAATT AGAGTACAATGGTATTATTGGATTGCAGAAATTGGTGTGTGCAATCGAAGATGGAAGAGACAGTTTGATGAGAAAGAGAA CTATCGTGAAGCGTATAAATAAGGAATAATATAGAAAAGCTTAGGGCCTTGAGAGGCCACATACAAGTAACCTCATTTTT AAAACACTTCATTTCCACTTCTTTTTGTTTCTA
CDS sequence (LotjaGi3g1v0394600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTCAAAGGGACAGAAATTTGTGAGGTTTGAAGATTGGAGGTCAGAGTCATCTCTAAGTATTGAGCAGAAAGATTC TACTAGTGATGGATTTCTTAAAAGAAAAGTTAAATCAAGTCCAGTAAATGATGGTTCAACAGAAAAACTGGCTTCTAGGT GCAAGGTGCTTGATCCACAAGGTTCACTACTTCAGAAATGGAACAAAATTTTTGTAATAACCTGTGTGATGGCAATCTCT GTGGACCCTTTGTTCTTTTACATCCCTGTGATTGATGACAAGAGGAAGTGCCTTGATTTGGATGGAGCACTGAAGATTAC TGCTGGTGTTTTTCGCACGTTCTTTGATCTTTTCTACATTCTTCGCATCATCTTTCAGTTTCGAACCGGGTTCATTGCCC CTTCTTCACGTGTATTTGGAAGGGGTGAGCTGGTTGATGATCCTCGAGCCATAGTGATGAGATACTTGAGTTCTCACTTC ATCATTGACATTCTATCAATTATTCCACTTCCTCAGATGGTCATTTTAGCTCTTATTCCAATCCCAAAATGCTCAGCTCC ATATCTGGAAAAGGATTTGTTGAAGTATACAGTAATAGCTCAGTATATACCAAGACTTTTGAGGATCTATCCACTGTTCA AAGAAGTAACAAGCACTTCTGGCATATTGACTGAGACAGCCTGGGCTGGAGCTGCTTATAATCTTTTTCTCTATATGCTG GGAAGTCATGTTGTTGGAGCTTTCTGGTATCTGTTTTCAGTGGAATCAGAGGTGCGGTGCTGGCGCCGGCTCTTGAAGAA TACTACATACTCTCATGATTCCTACCTGAGCTGTGGACAAGGCAATCCCATTGTTCTATCGCTTCTCAATAGCTCTACTT CTTGCCCTTACATTGATCCTGATGACATTGAAGACCCAACAGTTTACAATTTTGGGATATTTATAGAAGCTCTAAAGTCT CGCGTGGTGGAGTCGACTGCTGACTTTCATCAGAAGTTCTTCTACTGCTTTTGGTGGGGTTTGAGAAATGTAAGCTCTGT TGGGCAAAACCTCAAGACAAGTACTTATGTTGGAGAGATATTCTTTGCTATCTTCATTGCCACCTTTGGATTGGTGCTAT TTGCACTACTTATTGGAAACATGCAGAAATTTCTACAATCTACAACTGTTAGAGTTGAAGAGATGAGAATCAAAAGGCGG GACGCAGAACAGTGGATGTGCCACCGTATGCTACCTGACTTCTTGAAGGAAAGAATTAGAAGGTATGAACAATACAAATG GCAAGAAAATAGAGGTGTTGAAGAGGAGACGTTAATTCGCAACCTCCCCAAAGATCTTAGAAGGGACATCAGGCGTCATC TTTGCTTAGATTTACTTAAAAAAGTGCCAATGTTTGAGAACATGGATAACCAATTGTTGGATGCAATGTGTGATAGACTA AAGCCAGTCCTTTACACAGAGAAAAGTTCCATAGTTCGTGAAGGAGATCCAGTTGATGAAATGCTCTTCATTATGCGTGG AAAAATTGCTACTGCCACAACAAATGGTGGAAGAACTGGTTTCTTCAACTCCTCTGTACTAAAGGCCGGTGACTTCTGTG GAGAAGAGCTTCTAACATGGGCCTTGGATCCAAACACCTCCTCAAACCTACCCATTTCAACTAGAACAGTGGAAACTATT TCAGAAGTTGAAGCCTTTGCTCTCATGCCTGATGACTTGAAGTTTGTTACTTCCCAATTTCGACGCCTTATAAACAGCAA CCAACTCCAGCACACTTTCAGGTTCTACTCCTTACAATGGAGGACATGGGCTGCCTGTTTCATACAAGCAGCTTGGCGTA GATGCAGGAAAAAGAAGACTGAGAGGTTATTACGTGAAGCAGAAGAAAGGCTAGATGGTTTTGAGAGTGAGGCAGGGTCC TCACCAAGCTTTGTATCCACCGTATTTGCATCAAGGTTTGTATCGAATGTGCGGCCCATGCGAAGTGGCAAACGCATGCG CAACAAAATGCCACAGACACAGAGACTACTACCCTTGCTGCCTCAGAAGCCATCTGATTTCACTGCACAAAAAGACTAG
Protein sequence (LotjaGi3g1v0394600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSKGQKFVRFEDWRSESSLSIEQKDSTSDGFLKRKVKSSPVNDGSTEKLASRCKVLDPQGSLLQKWNKIFVITCVMAIS VDPLFFYIPVIDDKRKCLDLDGALKITAGVFRTFFDLFYILRIIFQFRTGFIAPSSRVFGRGELVDDPRAIVMRYLSSHF IIDILSIIPLPQMVILALIPIPKCSAPYLEKDLLKYTVIAQYIPRLLRIYPLFKEVTSTSGILTETAWAGAAYNLFLYML GSHVVGAFWYLFSVESEVRCWRRLLKNTTYSHDSYLSCGQGNPIVLSLLNSSTSCPYIDPDDIEDPTVYNFGIFIEALKS RVVESTADFHQKFFYCFWWGLRNVSSVGQNLKTSTYVGEIFFAIFIATFGLVLFALLIGNMQKFLQSTTVRVEEMRIKRR DAEQWMCHRMLPDFLKERIRRYEQYKWQENRGVEEETLIRNLPKDLRRDIRRHLCLDLLKKVPMFENMDNQLLDAMCDRL KPVLYTEKSSIVREGDPVDEMLFIMRGKIATATTNGGRTGFFNSSVLKAGDFCGEELLTWALDPNTSSNLPISTRTVETI SEVEAFALMPDDLKFVTSQFRRLINSNQLQHTFRFYSLQWRTWAACFIQAAWRRCRKKKTERLLREAEERLDGFESEAGS SPSFVSTVFASRFVSNVRPMRSGKRMRNKMPQTQRLLPLLPQKPSDFTAQKD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 69 | 69 | - | – | |
| PANTHER | 6 | 690 | 685 | 0.0 | – | |
| PANTHER | 6 | 690 | 685 | 0.0 | – | |
| SUPERFAMILY | 58 | 386 | 329 | 2.58E-29 | – | |
| Pfam | 67 | 392 | 326 | 2.3E-34 | ||
| TMHMM | 70 | 91 | 22 | - | – | |
| Phobius | 70 | 90 | 21 | - | – | |
| Phobius | 91 | 101 | 11 | - | – | |
| Phobius | 102 | 121 | 20 | - | – | |
| TMHMM | 106 | 125 | 20 | - | – | |
| Phobius | 122 | 159 | 38 | - | – | |
| TMHMM | 159 | 181 | 23 | - | – | |
| Phobius | 160 | 181 | 22 | - | – | |
| Phobius | 182 | 230 | 49 | - | – | |
| Phobius | 231 | 252 | 22 | - | – | |
| TMHMM | 231 | 253 | 23 | - | – | |
| Phobius | 253 | 359 | 107 | - | – | |
| TMHMM | 356 | 378 | 23 | - | – | |
| Phobius | 360 | 379 | 20 | - | – | |
| Phobius | 380 | 692 | 313 | - | – | |
| Gene3D | 388 | 455 | 68 | 2.2E-13 | – | |
| SUPERFAMILY | 393 | 580 | 188 | 1.66E-33 | ||
| Gene3D | 462 | 582 | 121 | 9.3E-42 | ||
| SMART | 464 | 595 | 132 | 4.3E-12 | ||
| CDD | 464 | 596 | 133 | 1.19338E-15 | ||
| ProSiteProfiles | 464 | 548 | 85 | 14.017 | ||
| Coils | 617 | 637 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ion channel activity | Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size). | ||
| Biological process | Ion transport | The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi3g1v0394600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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