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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0394600 |
Transcript ID | LotjaGi3g1v0394600.3 |
Related isoforms 4 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Cyclic nucleotide-gated ion channel-like protein; TAIR: AT1G01340.1 cyclic nucleotide gated channel 10; Swiss-Prot: sp|Q9LNJ0|CNG10_ARATH Probable cyclic nucleotide-gated ion channel 10; TrEMBL-Plants: tr|A0A072TMD1|A0A072TMD1_MEDTR Cyclic nucleotide-gated ion channel-like protein; Found in the gene: LotjaGi3g1v0394600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:79441244..79446489) extracted from Lotus japonicus Gifu genome v1.2.
CAAAGTTGCTTTGCTTGAACAGTACTGGCCATAAAAATAAAAATAAAAAATCTTTCTTCTTGATTAAGATAAATTGCATG TAACATTTTTTAGTTTTGAACTCTTCTGCTCTCTCTGTTTGGTTCCTGGGTAAGGAAAATAAAGGACTAAGGTATTTTCT CACTGGATGTGGTAGTAGCTTAATTAATCATGTCTTCAAAGGGACAGAAATTTGTGAGGTTTGTTATCTCAATCCTGATT TTTCTCAGTAATTCATTTCCTTTTGTACCAGAAAAAAATTGTTCAATTCCTTTTACTAAATTTTTATTGATTTTTTGTTT AATATGTGACAAATTGGCACCAAACAAAGAAATTCATAATTCAAATATGATCATGTTACTAAGAATGCCAAAATAGTTGA ACTGATGATAAACTATGTGTAGTTTTCAAAGTTAATTGTCAATTATGGGTTGAGAACAAGATTACTAGCTTCTCTAATTG ACTAACTGTGGTTCAAACTAACTTCACTTTTGTTGTCAATGATGGAAACTATAGATGCTAAATTGCTAATATATACTAAT ATACCTGATTCTTATTTAAAAATGCTTAACTGAGTTTACTATGTCCAGGTTTGAAGATTGGAGGTCAGAGTCATCTCTAA GTATTGAGCAGAAAGATTCTACTAGTGATGGATTTCTTAAAAGAAAAGTTAAATCAAGTCCAGTAAATGATGGTTCAACA GAAAAACTGGCTTCTAGGTGCAAGGTGCTTGATCCACAAGGTTCACTACTTCAGAAATGGAACAAAATTTTTGTAATAAC CTGTGTGATGGCAATCTCTGTGGACCCTTTGTTCTTTTACATCCCTGTGATTGATGACAAGAGGAAGTGCCTTGATTTGG ATGGAGCACTGAAGATTACTGCTGGTGTTTTTCGCACGTTCTTTGATCTTTTCTACATTCTTCGCATCATCTTTCAGTTT CGAACCGGGTTCATTGCCCCTTCTTCACGTGTATTTGGAAGGGGTGAGCTGGTTGATGATCCTCGAGCCATAGTGATGAG ATACTTGAGTTCTCACTTCATCATTGACATTCTATCAATTATTCCACTTCCTCAGGTATCTTAATCTCCTCTTTTACTCA TTCTCAAGTCAGAAATGCATTTTTATATACCATCAAAAGTCAATTGAGTGTTAAATTACTCTTTAACCATATTTTACACA GAGGCATTAGGATGAATTCGGATCCTCTTCTGGACTGCAGCCTTTGCAGCAACAAAATGACTAAGTGTTTGAAAGTGTTG ACAAATTTAACTTTTTTTAATCAATCTCAACCATTTAATGCCCAGGAAAATTGGAGAGCATTACACTCCTTTTGGTATTT TTCCCATCATGAATACCATGTAGTCAAAATGAAGGAAACTTCTATTACAATTTCTAGTTCAATTTGATGTGGAAGACATG CTTTTATGTTGTTTTAACACTTATAATGTGTTCTTAGATGGTCATTTTAGCTCTTATTCCAATCCCAAAATGCTCAGCTC CATATCTGGAAAAGGATTTGTTGAAGTATACAGTAATAGCTCAGTATATACCAAGACTTTTGAGGATCTATCCACTGTTC AAAGAAGTAACAAGCACTTCTGGCATATTGACTGAGACAGCCTGGGCTGGAGCTGCTTATAATCTTTTTCTCTATATGCT GGGAAGTCATGTAAGCTGATTTTCTTATATATTCAAAGAACCTCATCTTGTTCCTAGTTATCATGCTAAGTCATGGCAAA CAAGCCAAGTATATATAATGTGACATACCAGGTTGTTGGAGCTTTCTGGTATCTGTTTTCAGTGGAATCAGAGGTGCGGT GCTGGCGCCGGCTCTTGAAGAATACTACATACTCTCATGATTCCTACCTGAGCTGTGGACAAGGCAATCCCATTGTTCTA TCGCTTCTCAATAGCTCTACTTCTTGCCCTTACATTGATCCTGATGACATTGAAGACCCAACAGTTTACAATTTTGGGAT ATTTATAGAAGCTCTAAAGTCTCGCGTGGTGGAGTCGACTGCTGACTTTCATCAGAAGTTCTTCTACTGCTTTTGGTGGG GTTTGAGAAATGTAAGGTAGGTGAATGATCTTCTCTTTTCTTGAATCCATATGTAAGGTTCAAATTCTAGTCCTTTGGCA CTTCTATATTCTTGTGTTCTTAATTTTGTTCGGAATGTACCTGTAGACTTATCATTAGTTAGTGTTCGTAACATCTTATC AAGGAAAGCTCAAACAGCAATCTATTTAATGATGGAGGCTAGAAGCTTTTCAAAAGTCAGAATTTTTGTTGCTTTTTGCA GCTCTGTTGGGCAAAACCTCAAGACAAGTACTTATGTTGGAGAGATATTCTTTGCTATCTTCATTGCCACCTTTGGATTG GTGCTATTTGCACTACTTATTGGAAACATGCAGGTAAATCTTGGCCAGGACTATGAGATGAGATCATAGACATAACTAGG ATCTTGCATATATGTGTCACTAATCACACTTACCTAGTCATAGATATAGAGCCTGTTTGGTTGCAGACCAAAGAACACTT ATTGGAGCTTATCCAGCGCTTATTTTAGTCGATAAAATCCAATAAATGCTTTTTAGTCTGTGTCAAATGGGTCTATAGTA AAATTCATGAGTCCTTAGGCAAGTTAATGGTGTTTGTGTTGGAGTAGGTACTAAGCATTCAAAGGAACAGGTTTTAAACC TTAAATAGGCAAACTACACTAACATCAAATCACTGATACCATGCCTTCCATTGGAAACCAAATTTTCATCAATTGTGAGT GTTAAAACAGCCAACTATCTGACACCCCTCTTGTTTATTGAATGCATGGGTTGTGTTGATCATTGTCACAGAAATTTCTA CAATCTACAACTGTTAGAGTTGAAGAGATGAGAATCAAAAGGCGGGACGCAGAACAGTGGATGTGCCACCGTATGCTACC TGACTTCTTGAAGGAAAGAATTAGAAGGTATGAACAATACAAATGGCAAGAAAATAGAGGTGTTGAAGAGGAGACGTTAA TTCGCAACCTCCCCAAAGATCTTAGAAGGGACATCAGGCGTCATCTTTGCTTAGATTTACTTAAAAAAGTGGGTATCATA CTTAACGATCTCCTAATTTGGTTGGTTTTTCTTGGTCCTCCAACCTATGCTCAAGTATGTATAATGAACATTTTATGCTC TTGTTGTTTTAGGTGCCAATGTTTGAGAACATGGATAACCAATTGTTGGATGCAATGTGTGATAGACTAAAGCCAGTCCT TTACACAGAGAAAAGTTCCATAGTTCGTGAAGGAGATCCAGTTGATGAAATGCTCTTCATTATGCGTGGAAAAATTGCTA CTGCCACAACAAATGGTGGAAGAACTGGTTTCTTCAACTCCTCTGTACTAAAGGCCGGTGACTTCTGTGGAGAAGAGCTT CTAACATGGGCCTTGGATCCAAACACCTCCTCAAACCTACCCATTTCAACTAGAACAGTGGAAACTATTTCAGAAGTTGA AGCCTTTGCTCTCATGCCTGATGACTTGAAGTTTGTTACTTCCCAATTTCGACGCCTTATAAACAGCAACCAACTCCAGC ACACTTTCAGGCAAGGCTTCATACTTTCACCTTTGGTAATGCATAACTAGAATTTTGTGGAAAAAGTGTCAACACTGTAG GAAACAAGGTGCATATTAGATCATCTAAAACATTGACCTTACATTCTAAGAGTAGTAAGCTTAGATCATCCAATCAAATT CATTATAACAATGCCAGATTGGTAGACAATCAACAATCATGTTTTTATTTTTGAAAAAAATCATGTTGAGAAGTCTCACG TTAACTAGAGATATGACCAAATAATTTGTTGTATAGGGTAGAGCAATCCTCACCCAAGAGCTAGTGTTGGAGTATAGTTA GTAGGTCTAACCTGAAATTTAAGATGGTTTTAGAGTCTATCTTAAATCCAACAAAATTTCACGCTTCATATGTCCAACCT GAGAGAGTGTGCTAAGAGATCTCACATTATCTAGAGATATGGCCTAATAAATCCTTATGTAAGGTACAACAATCCTCACC CCAGCTAACTTTTGGAGTAGGATAAGGTCAAACCCCAAATTTAAGACTTGTCAAACACAAATGAGCAAGAATAGCCTGTT AGGCATATCCAATTAGACCTATGAGAAAATATGAGACTATGGTAAAGATCTTATAATAAATCATATCTTAAAATGAAAAA AGAAGAAAGAAAATGTGCTTGACAACCTCATTGAATGAGCACAATGTTTGAGCAGGTTCTACTCCTTACAATGGAGGACA TGGGCTGCCTGTTTCATACAAGCAGCTTGGCGTAGATGCAGGAAAAAGAAGACTGAGAGGTTATTACGTGAAGCAGAAGA AAGGCTAGATGGTTTTGAGAGTGAGGCAGGGTCCTCACCAAGCTTTGTATCCACCGTATTTGCATCAAGGTTTGTATCGA ATGTGCGGCCCATGCGAAGTGGCAAACGCATGCGCAACAAAATGCCACAGACACAGAGACTACTACCCTTGCTGCCTCAG AAGCCATCTGATTTCACTGCACAAAAAGACTAGGGGTGTTGTAGACTGTAATTTTGATTGCAAGTTTAATTTGTTTTATT GGCACAACGAAGAAACTTATCACATGTGGGGCTCAAGAGCAATATATATGTTCGTTGAAAAATTGTGTAATGTGAATTAG AGTACAATGGTATTATTGGATTGCAGAAATTGGTGTGTGCAATCGAAGATGGAAGAGACAGTTTGATGAGAAAGAGAACT ATCGTGAAGCGTATAAATAAGGAATAATATAGAAAAGCTTAGGGCCTTGAGAGGCCACATACAAGTAACCTCATTTTTAA AACACTTCATTTCCACTTCTTTTTGTTTCTATCTCTCTCCTCTTAATATCTATCACATCTTATACTTTCTCTCTCTTACT TTTCCTTTTCTTCCTATCTCTCTCATCATTCCACCTCAAAAGAGAGGTGTGTAAGTAACATTACTCTACTCAAATTCCTT AATATAAGAATCAATGTTTGGGGTAGGACAATAGTATTCTTGTGTTAGGCTATCTGGAAGTATGACTCTGTGTAATTTGT ATTTTGTAATTTACTTTTTGTACTCCTGTAGGTTCTAGTCTTTCTTTGACTAGCTCCCCTCCTTTGTATTCGGGTTAGCA CCCCTTGTGCTAGTGGTCAAAAAAAAAAAAGAATCAATGATCCCCC
CDS sequence (LotjaGi3g1v0394600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAACAAGCCAAGTATATATAATGTGACATACCAGGTTGTTGGAGCTTTCTGGTATCTGTTTTCAGTGGAATCAGA GGTGCGGTGCTGGCGCCGGCTCTTGAAGAATACTACATACTCTCATGATTCCTACCTGAGCTGTGGACAAGGCAATCCCA TTGTTCTATCGCTTCTCAATAGCTCTACTTCTTGCCCTTACATTGATCCTGATGACATTGAAGACCCAACAGTTTACAAT TTTGGGATATTTATAGAAGCTCTAAAGTCTCGCGTGGTGGAGTCGACTGCTGACTTTCATCAGAAGTTCTTCTACTGCTT TTGGTGGGGTTTGAGAAATGTAAGCTCTGTTGGGCAAAACCTCAAGACAAGTACTTATGTTGGAGAGATATTCTTTGCTA TCTTCATTGCCACCTTTGGATTGGTGCTATTTGCACTACTTATTGGAAACATGCAGAAATTTCTACAATCTACAACTGTT AGAGTTGAAGAGATGAGAATCAAAAGGCGGGACGCAGAACAGTGGATGTGCCACCGTATGCTACCTGACTTCTTGAAGGA AAGAATTAGAAGGTATGAACAATACAAATGGCAAGAAAATAGAGGTGTTGAAGAGGAGACGTTAATTCGCAACCTCCCCA AAGATCTTAGAAGGGACATCAGGCGTCATCTTTGCTTAGATTTACTTAAAAAAGTGCCAATGTTTGAGAACATGGATAAC CAATTGTTGGATGCAATGTGTGATAGACTAAAGCCAGTCCTTTACACAGAGAAAAGTTCCATAGTTCGTGAAGGAGATCC AGTTGATGAAATGCTCTTCATTATGCGTGGAAAAATTGCTACTGCCACAACAAATGGTGGAAGAACTGGTTTCTTCAACT CCTCTGTACTAAAGGCCGGTGACTTCTGTGGAGAAGAGCTTCTAACATGGGCCTTGGATCCAAACACCTCCTCAAACCTA CCCATTTCAACTAGAACAGTGGAAACTATTTCAGAAGTTGAAGCCTTTGCTCTCATGCCTGATGACTTGAAGTTTGTTAC TTCCCAATTTCGACGCCTTATAAACAGCAACCAACTCCAGCACACTTTCAGGCAAGGCTTCATACTTTCACCTTTGGTAA TGCATAACTAG
Protein sequence (LotjaGi3g1v0394600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MANKPSIYNVTYQVVGAFWYLFSVESEVRCWRRLLKNTTYSHDSYLSCGQGNPIVLSLLNSSTSCPYIDPDDIEDPTVYN FGIFIEALKSRVVESTADFHQKFFYCFWWGLRNVSSVGQNLKTSTYVGEIFFAIFIATFGLVLFALLIGNMQKFLQSTTV RVEEMRIKRRDAEQWMCHRMLPDFLKERIRRYEQYKWQENRGVEEETLIRNLPKDLRRDIRRHLCLDLLKKVPMFENMDN QLLDAMCDRLKPVLYTEKSSIVREGDPVDEMLFIMRGKIATATTNGGRTGFFNSSVLKAGDFCGEELLTWALDPNTSSNL PISTRTVETISEVEAFALMPDDLKFVTSQFRRLINSNQLQHTFRQGFILSPLVMHN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 5 | 5 | - | – | |
Phobius | 6 | 24 | 19 | - | – | |
PANTHER | 7 | 364 | 358 | 5.9E-231 | – | |
PANTHER | 7 | 364 | 358 | 5.9E-231 | – | |
Pfam | 13 | 162 | 150 | 1.7E-12 | ||
Phobius | 25 | 129 | 105 | - | – | |
SUPERFAMILY | 96 | 156 | 61 | 1.27E-11 | – | |
TMHMM | 126 | 148 | 23 | - | – | |
Phobius | 130 | 149 | 20 | - | – | |
Phobius | 150 | 376 | 227 | - | – | |
Gene3D | 158 | 225 | 68 | 9.4E-14 | – | |
SUPERFAMILY | 163 | 350 | 188 | 1.14E-33 | ||
Gene3D | 232 | 352 | 121 | 3.2E-42 | ||
CDD | 234 | 357 | 124 | 1.33686E-15 | ||
ProSiteProfiles | 234 | 318 | 85 | 14.017 | ||
SMART | 234 | 365 | 132 | 4.2E-12 | ||
Pfam | 255 | 344 | 90 | 1.5E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Ion channel activity | Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size). | ||
Biological process | Ion transport | The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi3g1v0394600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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