Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0394600 |
| Transcript ID | LotjaGi3g1v0394600.4 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclic nucleotide-gated ion channel-like protein; TAIR: AT1G01340.1 cyclic nucleotide gated channel 10; Swiss-Prot: sp|Q9LNJ0|CNG10_ARATH Probable cyclic nucleotide-gated ion channel 10; TrEMBL-Plants: tr|A0A072TMD1|A0A072TMD1_MEDTR Cyclic nucleotide-gated ion channel-like protein; Found in the gene: LotjaGi3g1v0394600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:79441850..79444953) extracted from Lotus japonicus Gifu genome v1.2.
AGGTTTGAAGATTGGAGGTCAGAGTCATCTCTAAGTATTGAGCAGAAAGATTCTACTAGTGATGGATTTCTTAAAAGAAA AGTTAAATCAAGTCCAGTAAATGATGGTTCAACAGAAAAACTGGCTTCTAGGTGCAAGGTGCTTGATCCACAAGGTTCAC TACTTCAGAAATGGAACAAAATTTTTGTAATAACCTGTGTGATGGCAATCTCTGTGGACCCTTTGTTCTTTTACATCCCT GTGATTGATGACAAGAGGAAGTGCCTTGATTTGGATGGAGCACTGAAGATTACTGCTGGTGTTTTTCGCACGTTCTTTGA TCTTTTCTACATTCTTCGCATCATCTTTCAGTTTCGAACCGGGTTCATTGCCCCTTCTTCACGTGTATTTGGAAGGGGTG AGCTGGTTGATGATCCTCGAGCCATAGTGATGAGATACTTGAGTTCTCACTTCATCATTGACATTCTATCAATTATTCCA CTTCCTCAGGTATCTTAATCTCCTCTTTTACTCATTCTCAAGTCAGAAATGCATTTTTATATACCATCAAAAGTCAATTG AGTGTTAAATTACTCTTTAACCATATTTTACACAGAGGCATTAGGATGAATTCGGATCCTCTTCTGGACTGCAGCCTTTG CAGCAACAAAATGACTAAGTGTTTGAAAGTGTTGACAAATTTAACTTTTTTTAATCAATCTCAACCATTTAATGCCCAGG AAAATTGGAGAGCATTACACTCCTTTTGGTATTTTTCCCATCATGAATACCATGTAGTCAAAATGAAGGAAACTTCTATT ACAATTTCTAGTTCAATTTGATGTGGAAGACATGCTTTTATGTTGTTTTAACACTTATAATGTGTTCTTAGATGGTCATT TTAGCTCTTATTCCAATCCCAAAATGCTCAGCTCCATATCTGGAAAAGGATTTGTTGAAGTATACAGTAATAGCTCAGTA TATACCAAGACTTTTGAGGATCTATCCACTGTTCAAAGAAGTAACAAGCACTTCTGGCATATTGACTGAGACAGCCTGGG CTGGAGCTGCTTATAATCTTTTTCTCTATATGCTGGGAAGTCATGTAAGCTGATTTTCTTATATATTCAAAGAACCTCAT CTTGTTCCTAGTTATCATGCTAAGTCATGGCAAACAAGCCAAGTATATATAATGTGACATACCAGGTTGTTGGAGCTTTC TGGTATCTGTTTTCAGTGGAATCAGAGGTGCGGTGCTGGCGCCGGCTCTTGAAGAATACTACATACTCTCATGATTCCTA CCTGAGCTGTGGACAAGGCAATCCCATTGTTCTATCGCTTCTCAATAGCTCTACTTCTTGCCCTTACATTGATCCTGATG ACATTGAAGACCCAACAGTTTACAATTTTGGGATATTTATAGAAGCTCTAAAGTCTCGCGTGGTGGAGTCGACTGCTGAC TTTCATCAGAAGTTCTTCTACTGCTTTTGGTGGGGTTTGAGAAATGTAAGGTAGGTGAATGATCTTCTCTTTTCTTGAAT CCATATGTAAGGTTCAAATTCTAGTCCTTTGGCACTTCTATATTCTTGTGTTCTTAATTTTGTTCGGAATGTACCTGTAG ACTTATCATTAGTTAGTGTTCGTAACATCTTATCAAGGAAAGCTCAAACAGCAATCTATTTAATGATGGAGGCTAGAAGC TTTTCAAAAGTCAGAATTTTTGTTGCTTTTTGCAGCTCTGTTGGGCAAAACCTCAAGACAAGTACTTATGTTGGAGAGAT ATTCTTTGCTATCTTCATTGCCACCTTTGGATTGGTGCTATTTGCACTACTTATTGGAAACATGCAGGTAAATCTTGGCC AGGACTATGAGATGAGATCATAGACATAACTAGGATCTTGCATATATGTGTCACTAATCACACTTACCTAGTCATAGATA TAGAGCCTGTTTGGTTGCAGACCAAAGAACACTTATTGGAGCTTATCCAGCGCTTATTTTAGTCGATAAAATCCAATAAA TGCTTTTTAGTCTGTGTCAAATGGGTCTATAGTAAAATTCATGAGTCCTTAGGCAAGTTAATGGTGTTTGTGTTGGAGTA GGTACTAAGCATTCAAAGGAACAGGTTTTAAACCTTAAATAGGCAAACTACACTAACATCAAATCACTGATACCATGCCT TCCATTGGAAACCAAATTTTCATCAATTGTGAGTGTTAAAACAGCCAACTATCTGACACCCCTCTTGTTTATTGAATGCA TGGGTTGTGTTGATCATTGTCACAGAAATTTCTACAATCTACAACTGTTAGAGTTGAAGAGATGAGAATCAAAAGGCGGG ACGCAGAACAGTGGATGTGCCACCGTATGCTACCTGACTTCTTGAAGGAAAGAATTAGAAGGTATGAACAATACAAATGG CAAGAAAATAGAGGTGTTGAAGAGGAGACGTTAATTCGCAACCTCCCCAAAGATCTTAGAAGGGACATCAGGCGTCATCT TTGCTTAGATTTACTTAAAAAAGTGGGTATCATACTTAACGATCTCCTAATTTGGTTGGTTTTTCTTGGTCCTCCAACCT ATGCTCAAGTATGTATAATGAACATTTTATGCTCTTGTTGTTTTAGGTGCCAATGTTTGAGAACATGGATAACCAATTGT TGGATGCAATGTGTGATAGACTAAAGCCAGTCCTTTACACAGAGAAAAGTTCCATAGTTCGTGAAGGAGATCCAGTTGAT GAAATGCTCTTCATTATGCGTGGAAAAATTGCTACTGCCACAACAAATGGTGGAAGAACTGGTTTCTTCAACTCCTCTGT ACTAAAGGCCGGTGACTTCTGTGGAGAAGAGCTTCTAACATGGGCCTTGGATCCAAACACCTCCTCAAACCTACCCATTT CAACTAGAACAGTGGAAACTATTTCAGAAGTTGAAGCCTTTGCTCTCATGCCTGATGACTTGAAGTTTGTTACTTCCCAA TTTCGACGCCTTATAAACAGCAACCAACTCCAGCACACTTTCAGGCAAGGCTTCATACTTTCACCTTTGGTAATGCATAA CTAGAATTTTGTGGAAAAAGTGTCAACACTGTAGGAAACAAGGTGCATATTAGATCATCTAAAA
CDS sequence (LotjaGi3g1v0394600.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAACAAGCCAAGTATATATAATGTGACATACCAGGTTGTTGGAGCTTTCTGGTATCTGTTTTCAGTGGAATCAGA GGTGCGGTGCTGGCGCCGGCTCTTGAAGAATACTACATACTCTCATGATTCCTACCTGAGCTGTGGACAAGGCAATCCCA TTGTTCTATCGCTTCTCAATAGCTCTACTTCTTGCCCTTACATTGATCCTGATGACATTGAAGACCCAACAGTTTACAAT TTTGGGATATTTATAGAAGCTCTAAAGTCTCGCGTGGTGGAGTCGACTGCTGACTTTCATCAGAAGTTCTTCTACTGCTT TTGGTGGGGTTTGAGAAATGTAAGCTCTGTTGGGCAAAACCTCAAGACAAGTACTTATGTTGGAGAGATATTCTTTGCTA TCTTCATTGCCACCTTTGGATTGGTGCTATTTGCACTACTTATTGGAAACATGCAGAAATTTCTACAATCTACAACTGTT AGAGTTGAAGAGATGAGAATCAAAAGGCGGGACGCAGAACAGTGGATGTGCCACCGTATGCTACCTGACTTCTTGAAGGA AAGAATTAGAAGGTATGAACAATACAAATGGCAAGAAAATAGAGGTGTTGAAGAGGAGACGTTAATTCGCAACCTCCCCA AAGATCTTAGAAGGGACATCAGGCGTCATCTTTGCTTAGATTTACTTAAAAAAGTGCCAATGTTTGAGAACATGGATAAC CAATTGTTGGATGCAATGTGTGATAGACTAAAGCCAGTCCTTTACACAGAGAAAAGTTCCATAGTTCGTGAAGGAGATCC AGTTGATGAAATGCTCTTCATTATGCGTGGAAAAATTGCTACTGCCACAACAAATGGTGGAAGAACTGGTTTCTTCAACT CCTCTGTACTAAAGGCCGGTGACTTCTGTGGAGAAGAGCTTCTAACATGGGCCTTGGATCCAAACACCTCCTCAAACCTA CCCATTTCAACTAGAACAGTGGAAACTATTTCAGAAGTTGAAGCCTTTGCTCTCATGCCTGATGACTTGAAGTTTGTTAC TTCCCAATTTCGACGCCTTATAAACAGCAACCAACTCCAGCACACTTTCAGGCAAGGCTTCATACTTTCACCTTTGGTAA TGCATAACTAG
Protein sequence (LotjaGi3g1v0394600.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MANKPSIYNVTYQVVGAFWYLFSVESEVRCWRRLLKNTTYSHDSYLSCGQGNPIVLSLLNSSTSCPYIDPDDIEDPTVYN FGIFIEALKSRVVESTADFHQKFFYCFWWGLRNVSSVGQNLKTSTYVGEIFFAIFIATFGLVLFALLIGNMQKFLQSTTV RVEEMRIKRRDAEQWMCHRMLPDFLKERIRRYEQYKWQENRGVEEETLIRNLPKDLRRDIRRHLCLDLLKKVPMFENMDN QLLDAMCDRLKPVLYTEKSSIVREGDPVDEMLFIMRGKIATATTNGGRTGFFNSSVLKAGDFCGEELLTWALDPNTSSNL PISTRTVETISEVEAFALMPDDLKFVTSQFRRLINSNQLQHTFRQGFILSPLVMHN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 6 | 24 | 19 | - | – | |
| PANTHER | 7 | 364 | 358 | 5.9E-231 | – | |
| PANTHER | 7 | 364 | 358 | 5.9E-231 | – | |
| Pfam | 13 | 162 | 150 | 1.7E-12 | ||
| Phobius | 25 | 129 | 105 | - | – | |
| SUPERFAMILY | 96 | 156 | 61 | 1.27E-11 | – | |
| TMHMM | 126 | 148 | 23 | - | – | |
| Phobius | 130 | 149 | 20 | - | – | |
| Phobius | 150 | 376 | 227 | - | – | |
| Gene3D | 158 | 225 | 68 | 9.4E-14 | – | |
| SUPERFAMILY | 163 | 350 | 188 | 1.14E-33 | ||
| Gene3D | 232 | 352 | 121 | 3.2E-42 | ||
| CDD | 234 | 357 | 124 | 1.33686E-15 | ||
| ProSiteProfiles | 234 | 318 | 85 | 14.017 | ||
| SMART | 234 | 365 | 132 | 4.2E-12 | ||
| Pfam | 255 | 344 | 90 | 1.5E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ion channel activity | Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size). | ||
| Biological process | Ion transport | The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi3g1v0394600.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…