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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0394600 |
| Transcript ID | LotjaGi3g1v0394600.5 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclic nucleotide-gated ion channel-like protein; TAIR: AT4G01010.1 cyclic nucleotide-gated channel 13; Swiss-Prot: sp|Q9LD40|CNG13_ARATH Putative cyclic nucleotide-gated ion channel 13; TrEMBL-Plants: tr|K7KZV3|K7KZV3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0394600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:79441850..79446154) extracted from Lotus japonicus Gifu genome v1.2.
AGGTTTGAAGATTGGAGGTCAGAGTCATCTCTAAGTATTGAGCAGAAAGATTCTACTAGTGATGGATTTCTTAAAAGAAA AGTTAAATCAAGTCCAGTAAATGATGGTTCAACAGAAAAACTGGCTTCTAGGTGCAAGGTGCTTGATCCACAAGGTTCAC TACTTCAGAAATGGAACAAAATTTTTGTAATAACCTGTGTGATGGCAATCTCTGTGGACCCTTTGTTCTTTTACATCCCT GTGATTGATGACAAGAGGAAGTGCCTTGATTTGGATGGAGCACTGAAGATTACTGCTGGTGTTTTTCGCACGTTCTTTGA TCTTTTCTACATTCTTCGCATCATCTTTCAGTTTCGAACCGGGTTCATTGCCCCTTCTTCACGTGTATTTGGAAGGGGTG AGCTGGTTGATGATCCTCGAGCCATAGTGATGAGATACTTGAGTTCTCACTTCATCATTGACATTCTATCAATTATTCCA CTTCCTCAGGTATCTTAATCTCCTCTTTTACTCATTCTCAAGTCAGAAATGCATTTTTATATACCATCAAAAGTCAATTG AGTGTTAAATTACTCTTTAACCATATTTTACACAGAGGCATTAGGATGAATTCGGATCCTCTTCTGGACTGCAGCCTTTG CAGCAACAAAATGACTAAGTGTTTGAAAGTGTTGACAAATTTAACTTTTTTTAATCAATCTCAACCATTTAATGCCCAGG AAAATTGGAGAGCATTACACTCCTTTTGGTATTTTTCCCATCATGAATACCATGTAGTCAAAATGAAGGAAACTTCTATT ACAATTTCTAGTTCAATTTGATGTGGAAGACATGCTTTTATGTTGTTTTAACACTTATAATGTGTTCTTAGATGGTCATT TTAGCTCTTATTCCAATCCCAAAATGCTCAGCTCCATATCTGGAAAAGGATTTGTTGAAGTATACAGTAATAGCTCAGTA TATACCAAGACTTTTGAGGATCTATCCACTGTTCAAAGAAGTAACAAGCACTTCTGGCATATTGACTGAGACAGCCTGGG CTGGAGCTGCTTATAATCTTTTTCTCTATATGCTGGGAAGTCATGTAAGCTGATTTTCTTATATATTCAAAGAACCTCAT CTTGTTCCTAGTTATCATGCTAAGTCATGGCAAACAAGCCAAGTATATATAATGTGACATACCAGGTTGTTGGAGCTTTC TGGTATCTGTTTTCAGTGGAATCAGAGGTGCGGTGCTGGCGCCGGCTCTTGAAGAATACTACATACTCTCATGATTCCTA CCTGAGCTGTGGACAAGGCAATCCCATTGTTCTATCGCTTCTCAATAGCTCTACTTCTTGCCCTTACATTGATCCTGATG ACATTGAAGACCCAACAGTTTACAATTTTGGGATATTTATAGAAGCTCTAAAGTCTCGCGTGGTGGAGTCGACTGCTGAC TTTCATCAGAAGTTCTTCTACTGCTTTTGGTGGGGTTTGAGAAATGTAAGGTAGGTGAATGATCTTCTCTTTTCTTGAAT CCATATGTAAGGTTCAAATTCTAGTCCTTTGGCACTTCTATATTCTTGTGTTCTTAATTTTGTTCGGAATGTACCTGTAG ACTTATCATTAGTTAGTGTTCGTAACATCTTATCAAGGAAAGCTCAAACAGCAATCTATTTAATGATGGAGGCTAGAAGC TTTTCAAAAGTCAGAATTTTTGTTGCTTTTTGCAGCTCTGTTGGGCAAAACCTCAAGACAAGTACTTATGTTGGAGAGAT ATTCTTTGCTATCTTCATTGCCACCTTTGGATTGGTGCTATTTGCACTACTTATTGGAAACATGCAGGTAAATCTTGGCC AGGACTATGAGATGAGATCATAGACATAACTAGGATCTTGCATATATGTGTCACTAATCACACTTACCTAGTCATAGATA TAGAGCCTGTTTGGTTGCAGACCAAAGAACACTTATTGGAGCTTATCCAGCGCTTATTTTAGTCGATAAAATCCAATAAA TGCTTTTTAGTCTGTGTCAAATGGGTCTATAGTAAAATTCATGAGTCCTTAGGCAAGTTAATGGTGTTTGTGTTGGAGTA GGTACTAAGCATTCAAAGGAACAGGTTTTAAACCTTAAATAGGCAAACTACACTAACATCAAATCACTGATACCATGCCT TCCATTGGAAACCAAATTTTCATCAATTGTGAGTGTTAAAACAGCCAACTATCTGACACCCCTCTTGTTTATTGAATGCA TGGGTTGTGTTGATCATTGTCACAGAAATTTCTACAATCTACAACTGTTAGAGTTGAAGAGATGAGAATCAAAAGGCGGG ACGCAGAACAGTGGATGTGCCACCGTATGCTACCTGACTTCTTGAAGGAAAGAATTAGAAGGTATGAACAATACAAATGG CAAGAAAATAGAGGTGTTGAAGAGGAGACGTTAATTCGCAACCTCCCCAAAGATCTTAGAAGGGACATCAGGCGTCATCT TTGCTTAGATTTACTTAAAAAAGTGGGTATCATACTTAACGATCTCCTAATTTGGTTGGTTTTTCTTGGTCCTCCAACCT ATGCTCAAGTATGTATAATGAACATTTTATGCTCTTGTTGTTTTAGGTGCCAATGTTTGAGAACATGGATAACCAATTGT TGGATGCAATGTGTGATAGACTAAAGCCAGTCCTTTACACAGAGAAAAGTTCCATAGTTCGTGAAGGAGATCCAGTTGAT GAAATGCTCTTCATTATGCGTGGAAAAATTGCTACTGCCACAACAAATGGTGGAAGAACTGGTTTCTTCAACTCCTCTGT ACTAAAGGCCGGTGACTTCTGTGGAGAAGAGCTTCTAACATGGGCCTTGGATCCAAACACCTCCTCAAACCTACCCATTT CAACTAGAACAGTGGAAACTATTTCAGAAGTTGAAGCCTTTGCTCTCATGCCTGATGACTTGAAGTTTGTTACTTCCCAA TTTCGACGCCTTATAAACAGCAACCAACTCCAGCACACTTTCAGGCAAGGCTTCATACTTTCACCTTTGGTAATGCATAA CTAGAATTTTGTGGAAAAAGTGTCAACACTGTAGGAAACAAGGTGCATATTAGATCATCTAAAACATTGACCTTACATTC TAAGAGTAGTAAGCTTAGATCATCCAATCAAATTCATTATAACAATGCCAGATTGGTAGACAATCAACAATCATGTTTTT ATTTTTGAAAAAAATCATGTTGAGAAGTCTCACGTTAACTAGAGATATGACCAAATAATTTGTTGTATAGGGTAGAGCAA TCCTCACCCAAGAGCTAGTGTTGGAGTATAGTTAGTAGGTCTAACCTGAAATTTAAGATGGTTTTAGAGTCTATCTTAAA TCCAACAAAATTTCACGCTTCATATGTCCAACCTGAGAGAGTGTGCTAAGAGATCTCACATTATCTAGAGATATGGCCTA ATAAATCCTTATGTAAGGTACAACAATCCTCACCCCAGCTAACTTTTGGAGTAGGATAAGGTCAAACCCCAAATTTAAGA CTTGTCAAACACAAATGAGCAAGAATAGCCTGTTAGGCATATCCAATTAGACCTATGAGAAAATATGAGACTATGGTAAA GATCTTATAATAAATCATATCTTAAAATGAAAAAAGAAGAAAGAAAATGTGCTTGACAACCTCATTGAATGAGCACAATG TTTGAGCAGGTTCTACTCCTTACAATGGAGGACATGGGCTGCCTGTTTCATACAAGCAGCTTGGCGTAGATGCAGGAAAA AGAAGACTGAGAGGTTATTACGTGAAGCAGAAGAAAGGCTAGATGGTTTTGAGAGTGAGGCAGGGTCCTCACCAAGCTTT GTATCCACCGTATTTGCATCAAGGTTTGTATCGAATGTGCGGCCCATGCGAAGTGGCAAACGCATGCGCAACAAAATGCC ACAGACACAGAGACTACTACCCTTGCTGCCTCAGAAGCCATCTGATTTCACTGCACAAAAAGACTAGGGGTGTTGTAGAC TGTAATTTTGATTGCAAGTTTAATTTGTTTTATTGGCACAACGAAGAAACTTATCACATGTGGGGCTCAAGAGCAATATA TATGTTCGTTGAAAAATTGTGTAATGTGAATTAGAGTACAATGGTATTATTGGATTGCAGAAATTGGTGTGTGCAATCGA AGATGGAAGAGACAGTTTGATGAGAAAGAGAACTATCGTGAAGCGTATAAATAAGGAATAATATAGAAAAGCTTAGGGCC TTGAGAGGCCACATACAAGTAACCTCATTTTTAAAACACTTCATTTCCACTTCTTTTTGTTTCTA
CDS sequence (LotjaGi3g1v0394600.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAACAAGCCAAGTATATATAATGTGACATACCAGGTTGTTGGAGCTTTCTGGTATCTGTTTTCAGTGGAATCAGA GGTGCGGTGCTGGCGCCGGCTCTTGAAGAATACTACATACTCTCATGATTCCTACCTGAGCTGTGGACAAGGCAATCCCA TTGTTCTATCGCTTCTCAATAGCTCTACTTCTTGCCCTTACATTGATCCTGATGACATTGAAGACCCAACAGTTTACAAT TTTGGGATATTTATAGAAGCTCTAAAGTCTCGCGTGGTGGAGTCGACTGCTGACTTTCATCAGAAGTTCTTCTACTGCTT TTGGTGGGGTTTGAGAAATGTAAGCTCTGTTGGGCAAAACCTCAAGACAAGTACTTATGTTGGAGAGATATTCTTTGCTA TCTTCATTGCCACCTTTGGATTGGTGCTATTTGCACTACTTATTGGAAACATGCAGAAATTTCTACAATCTACAACTGTT AGAGTTGAAGAGATGAGAATCAAAAGGCGGGACGCAGAACAGTGGATGTGCCACCGTATGCTACCTGACTTCTTGAAGGA AAGAATTAGAAGGTATGAACAATACAAATGGCAAGAAAATAGAGGTGTTGAAGAGGAGACGTTAATTCGCAACCTCCCCA AAGATCTTAGAAGGGACATCAGGCGTCATCTTTGCTTAGATTTACTTAAAAAAGTGCCAATGTTTGAGAACATGGATAAC CAATTGTTGGATGCAATGTGTGATAGACTAAAGCCAGTCCTTTACACAGAGAAAAGTTCCATAGTTCGTGAAGGAGATCC AGTTGATGAAATGCTCTTCATTATGCGTGGAAAAATTGCTACTGCCACAACAAATGGTGGAAGAACTGGTTTCTTCAACT CCTCTGTACTAAAGGCCGGTGACTTCTGTGGAGAAGAGCTTCTAACATGGGCCTTGGATCCAAACACCTCCTCAAACCTA CCCATTTCAACTAGAACAGTGGAAACTATTTCAGAAGTTGAAGCCTTTGCTCTCATGCCTGATGACTTGAAGTTTGTTAC TTCCCAATTTCGACGCCTTATAAACAGCAACCAACTCCAGCACACTTTCAGGTTCTACTCCTTACAATGGAGGACATGGG CTGCCTGTTTCATACAAGCAGCTTGGCGTAGATGCAGGAAAAAGAAGACTGAGAGGTTATTACGTGAAGCAGAAGAAAGG CTAGATGGTTTTGAGAGTGAGGCAGGGTCCTCACCAAGCTTTGTATCCACCGTATTTGCATCAAGGTTTGTATCGAATGT GCGGCCCATGCGAAGTGGCAAACGCATGCGCAACAAAATGCCACAGACACAGAGACTACTACCCTTGCTGCCTCAGAAGC CATCTGATTTCACTGCACAAAAAGACTAG
Protein sequence (LotjaGi3g1v0394600.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MANKPSIYNVTYQVVGAFWYLFSVESEVRCWRRLLKNTTYSHDSYLSCGQGNPIVLSLLNSSTSCPYIDPDDIEDPTVYN FGIFIEALKSRVVESTADFHQKFFYCFWWGLRNVSSVGQNLKTSTYVGEIFFAIFIATFGLVLFALLIGNMQKFLQSTTV RVEEMRIKRRDAEQWMCHRMLPDFLKERIRRYEQYKWQENRGVEEETLIRNLPKDLRRDIRRHLCLDLLKKVPMFENMDN QLLDAMCDRLKPVLYTEKSSIVREGDPVDEMLFIMRGKIATATTNGGRTGFFNSSVLKAGDFCGEELLTWALDPNTSSNL PISTRTVETISEVEAFALMPDDLKFVTSQFRRLINSNQLQHTFRFYSLQWRTWAACFIQAAWRRCRKKKTERLLREAEER LDGFESEAGSSPSFVSTVFASRFVSNVRPMRSGKRMRNKMPQTQRLLPLLPQKPSDFTAQKD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 6 | 24 | 19 | - | – | |
| PANTHER | 7 | 460 | 454 | 1.6E-268 | – | |
| PANTHER | 7 | 460 | 454 | 1.6E-268 | – | |
| Pfam | 13 | 162 | 150 | 2.7E-12 | ||
| Phobius | 25 | 129 | 105 | - | – | |
| SUPERFAMILY | 96 | 156 | 61 | 2.04E-11 | – | |
| TMHMM | 126 | 148 | 23 | - | – | |
| Phobius | 130 | 149 | 20 | - | – | |
| Phobius | 150 | 462 | 313 | - | – | |
| Gene3D | 158 | 225 | 68 | 1.3E-13 | – | |
| SUPERFAMILY | 163 | 350 | 188 | 1.85E-33 | ||
| Gene3D | 232 | 352 | 121 | 4.7E-42 | ||
| ProSiteProfiles | 234 | 318 | 85 | 14.017 | ||
| SMART | 234 | 365 | 132 | 4.3E-12 | ||
| CDD | 234 | 366 | 133 | 3.02135E-16 | ||
| Pfam | 255 | 344 | 90 | 2.1E-6 | ||
| Coils | 387 | 407 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ion channel activity | Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size). | ||
| Biological process | Ion transport | The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi3g1v0394600.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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