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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0396300 |
Transcript ID | LotjaGi3g1v0396300.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | E3 ubiquitin-protein ligase; TAIR: AT3G61790.1 Protein with RING/U-box and TRAF-like domain; Swiss-Prot: sp|Q84JL3|SINA3_ARATH E3 ubiquitin-protein ligase SINAT3; TrEMBL-Plants: tr|A0A1J7GW29|A0A1J7GW29_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0396300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:79651900..79655450) extracted from Lotus japonicus Gifu genome v1.2.
GGAAAATTGAAAAGTTATAATTAATAAGAGACATAAAAGGTATAAGAGGAAGTTGAATAATAATTTTAATAAAACAAAAA CATTAATTACTATTTCTTAATACTTGTGCAACGACCTTTAGAGTGACAGTTATATTGGAATTGAGCGAAATATTAAATAA TGTGCCTTCTCTTCTCTTGAACTGACCCACTCTGAGCTCATCCTAAAATATACTCTTCTTTAATTTTCTTTCCATTCCTT TTTCTATTTTGTATTCTATCTGATGAAGCTTCCCTTTTTTCTTCTTCTTGTTCTTCTTCTCTGTGTGGTTCTTTTGGTAA AATGCTGAGACCCCTTTGATTCTGACAAAAATGTCATTAGTTGTCTGAGAATAACAAGGTAGGAAAACAAAAACTTCCTA TTTGGGGTTTGGTTTCTGTCATTTGATTTTGTTGGATTGGTATCAATTATTATCGTTGTCGTTCTGGCTGAAACAATGGA ATCAGGGAGCATTGATAGTACTGTACCCTCCTTGATCATGGTGGATGAGGATGTGCGTCCCCATCTGTTTTCTTCAGTCA CCAAGCTACATGGCAATGGTCCTACTGCTACCAGTGTCCACGAGATTCTTGAATGCCCTGTTTGCACCAATGCAATGTAC CCTCCAATCCATCAGGTCTGTTCTTTCTTGAATGCCCTGTTTTCCTCCGATTCTGCTTGCTTTTTCAGTGCATGTTGGTT TGAGTTGGTACCTTGTTTCCTCATTTTTTTAATCATTAGTTGGATATTCTTCTGTTAATCTTATGTTCCTTTTTTTGTTA ACTACTTTTACTTCTTAGGGGCCATGAGTTTCTTTTCGTTTGGACTTTGTTTATATATTTTGTACTGGCATTGCCATGAT TAAATGTTAGAGAGGCTATTTTTTCCAAACCACTTATGTTTACATTGCTTTGCAAAGCAATGGAAAAAAGGACTATTCAA TCCATGGTGGTTCTAACAATGATAACTTATGCTTGCTTTGGTGATTTTGCCTGACCTACGGGGTGGTGCTAGATGGATAT GTTGGATGATGAAAATTTAAATGACTTTAATGTCTAAACAAGACAATTATTGCCCCATCCTCTACATACCTATATGTGGT AGTGGCAGGGTATGGTGTGACTTAAAACTTATCTCTACAAAAGCCTTAGCTTTTTGGTCTTTTTTGTAATAACACTGGAT ATATACTTTGTAGACTGCAACACATTAGTTACTAGGCTATATAATTAATGAAGTGTCTATGAGGATTGAGGATTTTCATC AATGTTTTTGGTCAATCAAGAACTTAGTTTGGCAAGGACTATTCAATTCGTAAGTGTAAGAGGAATTTATTGGGTTGTTT AGTCTATTAGGCTATTAAAAGAGCTTGAAGAAAAAATAAGTCACATGCATACAGGGTTTCTGAGTTCTGCTTCGAATGAA TTTATTGAGTGACAAATTTTACACATTCTGTTTAGAAAATGCCGCACATGTCCAAGTGAGATGTCATGAGACATTGTTGG GTTTTAGTTGAGTTTTTTCCTTTGGCGTAGTACAGTAGTAGCCTATAAGAGTCATATTAAAACTTTTGTTGTACTCTTGT TCATCATCTTACTAATTTCGAATGGAAAGTACCTGGAATGGAAACAATAAAATTACAAAAGTATAAGGTGTTAACATCCC TTCACTCATCAGGTTTGGGTTCTCACACATCTTGCATATTTATAAATATTGGAGTTTGAGCAAATCTGGTAATTTATTTA ATTTCACAATTCAGCTTTTGCTTATTTCAACAAGTAATGGTGTATCAGATCAGACTGTTTATTTTTTTGGGAGGAATATT TTAGGTATGGAGTTTCTCGTCCTTGATGAATACAGAGATAAATTTGATTAATGTTTTGGTGGATTTTAAAACCAATGTTA ACTTTTTTCTGCAGTGCCGCAACGGGCATACCCTTTGTTCGACATGTAAGACAAGGGTACACAATAGGTGCCCAACTTGT AGACAGGAACTGGGTGATATAAGGTGTCTGGCGTTGGAGAAGATAGCAGAATCACTTGAACTGCCTTGCGAATACAGATC TCTTGGGTGTCCAGAGATATTCCCCTATTACAGAAAACTCAAACATGAGTCTATTTGTAACTTCAGACCGTACAATTGCC CTTACACTGGGTCAGACTGCTCTGTTGTTGGGGATATTCCACACCTTGTTGCTCATTTAAGGGACGACCACCGTGTTGAT ATGTATTCTGCATGCACTTTTAACCACCGCTACGTCAAGGCTAATCCCATGGAAGTAGAAAATGCTACATGGATGTTAAC AGTAAGTACGCTGTTCTCTAAGTAACACTTGGAAGAAGAAAAGGAAAGAAAGTCGTCTGAGATTATAGACATTTGCACGT TTTGATCAACTTCTTTTTCCTCATAATCAATTCTGACACACAGAAGCTACTCAAGGAAGCTTCTCCCCAGAATTGATTCC GGCTTCAGAATTAATTCTAGAATAATTTCCAAACATGCATACAATGAAACTATACAAGCATAATCACTTTTAGAAAACAA CAATGCCAAATACATCTACAATACCTTGATGTGATATTCATTACTAGGCGTTTGCAGCAGAGTTTCCTTGATTTCATGCA CAAATACATCTATATTATATGCACTTGTTGTTTTCTCATCCAAATTGATATGGCTAACTGTTTTATTATGTTAGGTCTTC CACTGTTATGGTCACTATTTCTGTCTCCATTTTGAAGCCTTTCAACTAGGCACGGCTCCGGTTTACATGGCATTCCTCCG TTTCATGGGAGATGAAAGAGAAGCCAGGAGCTACAGCTACAGTCTTGAGGTTGGAGGAAGCGGGCGTAAACTAACATATG AGGGCAGTCCAAGAAGTATTAGAGATAGCCACAAGAAAGTTAGAGACAGCCATGACGGCCTTGTTGTGCATCGTAACATG GCAATTTTCTTCTCAGGTGGGGATAGTAAAGAGTTGAAGTTACGGGAAAGATATGGAAACAACGAACCCCTGTGGGTGGA GTGGACATACCCAACATGTATAGCTAGATTTTGCTTGCATCTTCCCCTCCATGTAATTTATTTAGAGGGTAATGTTCTTG CAAGCTGTTGATAATTTTGGAAAGTAGTTAAGCCTGCTGAATGTTGATTGAGGTTTCAACTTACAAAAGAAGCACTAGCA GTACCTCTCCCTTTTTTGGAGTTCTAACCAAGATATATACTAGTCAAATCTTTTGGTCCTACGTGTATCATATGCTAAAT TCCTGGAACAGTTTTTCTCTCATTCTTTTTGTTTTACATTTTCTGCAAACTTTCCATTGACAACCTGACTTATCATCCTT TCTAACCATTTAGAAATCATATACTATGCTGCTATTTCCTACCTTTAATGTCTATAATAGTTTAAACAGTTGTTCTGCAT CGTTTTCTGAGTCATATTCTAACGAACTCTTATAAATTCACACTCCGCATACTTTTCTTTCCACACATTTCACATCATAT TTCTCACTTATCTACTATTTTTATCTCTTTC
CDS sequence (LotjaGi3g1v0396300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATCAGGGAGCATTGATAGTACTGTACCCTCCTTGATCATGGTGGATGAGGATGTGCGTCCCCATCTGTTTTCTTC AGTCACCAAGCTACATGGCAATGGTCCTACTGCTACCAGTGTCCACGAGATTCTTGAATGCCCTGTTTGCACCAATGCAA TGTACCCTCCAATCCATCAGTGCCGCAACGGGCATACCCTTTGTTCGACATGTAAGACAAGGGTACACAATAGGTGCCCA ACTTGTAGACAGGAACTGGGTGATATAAGGTGTCTGGCGTTGGAGAAGATAGCAGAATCACTTGAACTGCCTTGCGAATA CAGATCTCTTGGGTGTCCAGAGATATTCCCCTATTACAGAAAACTCAAACATGAGTCTATTTGTAACTTCAGACCGTACA ATTGCCCTTACACTGGGTCAGACTGCTCTGTTGTTGGGGATATTCCACACCTTGTTGCTCATTTAAGGGACGACCACCGT GTTGATATGTATTCTGCATGCACTTTTAACCACCGCTACGTCAAGGCTAATCCCATGGAAGTAGAAAATGCTACATGGAT GTTAACAGTCTTCCACTGTTATGGTCACTATTTCTGTCTCCATTTTGAAGCCTTTCAACTAGGCACGGCTCCGGTTTACA TGGCATTCCTCCGTTTCATGGGAGATGAAAGAGAAGCCAGGAGCTACAGCTACAGTCTTGAGGTTGGAGGAAGCGGGCGT AAACTAACATATGAGGGCAGTCCAAGAAGTATTAGAGATAGCCACAAGAAAGTTAGAGACAGCCATGACGGCCTTGTTGT GCATCGTAACATGGCAATTTTCTTCTCAGGTGGGGATAGTAAAGAGTTGAAGTTACGGGAAAGATATGGAAACAACGAAC CCCTGTGGGTGGAGTGGACATACCCAACATGTATAGCTAGATTTTGCTTGCATCTTCCCCTCCATGTAATTTATTTAGAG GGTAATGTTCTTGCAAGCTGTTGA
Protein sequence (LotjaGi3g1v0396300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESGSIDSTVPSLIMVDEDVRPHLFSSVTKLHGNGPTATSVHEILECPVCTNAMYPPIHQCRNGHTLCSTCKTRVHNRCP TCRQELGDIRCLALEKIAESLELPCEYRSLGCPEIFPYYRKLKHESICNFRPYNCPYTGSDCSVVGDIPHLVAHLRDDHR VDMYSACTFNHRYVKANPMEVENATWMLTVFHCYGHYFCLHFEAFQLGTAPVYMAFLRFMGDEREARSYSYSLEVGGSGR KLTYEGSPRSIRDSHKKVRDSHDGLVVHRNMAIFFSGGDSKELKLRERYGNNEPLWVEWTYPTCIARFCLHLPLHVIYLE GNVLASC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 24 | 100 | 77 | 4.5E-7 | ||
PANTHER | 30 | 286 | 257 | 6.9E-168 | – | |
PANTHER | 30 | 286 | 257 | 6.9E-168 | – | |
SUPERFAMILY | 36 | 86 | 51 | 3.53E-6 | – | |
CDD | 45 | 83 | 39 | 5.199E-14 | – | |
ProSiteProfiles | 47 | 83 | 37 | 9.421 | ||
Pfam | 89 | 286 | 198 | 1.9E-74 | ||
ProSiteProfiles | 100 | 160 | 61 | 14.134 | ||
SUPERFAMILY | 100 | 283 | 184 | 1.9E-45 | ||
Gene3D | 101 | 155 | 55 | 1.6E-17 | ||
Gene3D | 172 | 286 | 115 | 8.1E-31 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
Biological process | Ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. | ||
Biological process | Multicellular organism development | The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). | ||
Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. | ||
Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi3g1v0396300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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