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LotjaGi3g1v0396300.2

Overview

Field Value
Gene ID LotjaGi3g1v0396300
Transcript ID LotjaGi3g1v0396300.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description E3 ubiquitin-protein ligase; TAIR: AT3G61790.1 Protein with RING/U-box and TRAF-like domain; Swiss-Prot: sp|Q84JL3|SINA3_ARATH E3 ubiquitin-protein ligase SINAT3; TrEMBL-Plants: tr|A0A1J7GW29|A0A1J7GW29_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0396300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:79651900..79655450) extracted from Lotus japonicus Gifu genome v1.2.

GGAAAATTGAAAAGTTATAATTAATAAGAGACATAAAAGGTATAAGAGGAAGTTGAATAATAATTTTAATAAAACAAAAA CATTAATTACTATTTCTTAATACTTGTGCAACGACCTTTAGAGTGACAGTTATATTGGAATTGAGCGAAATATTAAATAA TGTGCCTTCTCTTCTCTTGAACTGACCCACTCTGAGCTCATCCTAAAATATACTCTTCTTTAATTTTCTTTCCATTCCTT TTTCTATTTTGTATTCTATCTGATGAAGCTTCCCTTTTTTCTTCTTCTTGTTCTTCTTCTCTGTGTGGTTCTTTTGGTAA AATGCTGAGACCCCTTTGATTCTGACAAAAATGTCATTAGTTGTCTGAGAATAACAAGGTAGGAAAACAAAAACTTCCTA TTTGGGGTTTGGTTTCTGTCATTTGATTTTGTTGGATTGGTATCAATTATTATCGTTGTCGTTCTGGCTGAAACAATGGA ATCAGGGAGCATTGATAGTACTGTACCCTCCTTGATCATGGTGGATGAGGATGTGCGTCCCCATCTGTTTTCTTCAGTCA CCAAGCTACATGGCAATGGTCCTACTGCTACCAGTGTCCACGAGATTCTTGAATGCCCTGTTTGCACCAATGCAATGTAC CCTCCAATCCATCAGGTCTGTTCTTTCTTGAATGCCCTGTTTTCCTCCGATTCTGCTTGCTTTTTCAGTGCATGTTGGTT TGAGTTGGTACCTTGTTTCCTCATTTTTTTAATCATTAGTTGGATATTCTTCTGTTAATCTTATGTTCCTTTTTTTGTTA ACTACTTTTACTTCTTAGGGGCCATGAGTTTCTTTTCGTTTGGACTTTGTTTATATATTTTGTACTGGCATTGCCATGAT TAAATGTTAGAGAGGCTATTTTTTCCAAACCACTTATGTTTACATTGCTTTGCAAAGCAATGGAAAAAAGGACTATTCAA TCCATGGTGGTTCTAACAATGATAACTTATGCTTGCTTTGGTGATTTTGCCTGACCTACGGGGTGGTGCTAGATGGATAT GTTGGATGATGAAAATTTAAATGACTTTAATGTCTAAACAAGACAATTATTGCCCCATCCTCTACATACCTATATGTGGT AGTGGCAGGGTATGGTGTGACTTAAAACTTATCTCTACAAAAGCCTTAGCTTTTTGGTCTTTTTTGTAATAACACTGGAT ATATACTTTGTAGACTGCAACACATTAGTTACTAGGCTATATAATTAATGAAGTGTCTATGAGGATTGAGGATTTTCATC AATGTTTTTGGTCAATCAAGAACTTAGTTTGGCAAGGACTATTCAATTCGTAAGTGTAAGAGGAATTTATTGGGTTGTTT AGTCTATTAGGCTATTAAAAGAGCTTGAAGAAAAAATAAGTCACATGCATACAGGGTTTCTGAGTTCTGCTTCGAATGAA TTTATTGAGTGACAAATTTTACACATTCTGTTTAGAAAATGCCGCACATGTCCAAGTGAGATGTCATGAGACATTGTTGG GTTTTAGTTGAGTTTTTTCCTTTGGCGTAGTACAGTAGTAGCCTATAAGAGTCATATTAAAACTTTTGTTGTACTCTTGT TCATCATCTTACTAATTTCGAATGGAAAGTACCTGGAATGGAAACAATAAAATTACAAAAGTATAAGGTGTTAACATCCC TTCACTCATCAGGTTTGGGTTCTCACACATCTTGCATATTTATAAATATTGGAGTTTGAGCAAATCTGGTAATTTATTTA ATTTCACAATTCAGCTTTTGCTTATTTCAACAAGTAATGGTGTATCAGATCAGACTGTTTATTTTTTTGGGAGGAATATT TTAGGTATGGAGTTTCTCGTCCTTGATGAATACAGAGATAAATTTGATTAATGTTTTGGTGGATTTTAAAACCAATGTTA ACTTTTTTCTGCAGTGCCGCAACGGGCATACCCTTTGTTCGACATGTAAGACAAGGGTACACAATAGGTGCCCAACTTGT AGACAGGAACTGGGTGATATAAGGTGTCTGGCGTTGGAGAAGATAGCAGAATCACTTGAACTGCCTTGCGAATACAGATC TCTTGGGTGTCCAGAGATATTCCCCTATTACAGAAAACTCAAACATGAGTCTATTTGTAACTTCAGACCGTACAATTGCC CTTACACTGGGTCAGACTGCTCTGTTGTTGGGGATATTCCACACCTTGTTGCTCATTTAAGGGACGACCACCGTGTTGAT ATGTATTCTGCATGCACTTTTAACCACCGCTACGTCAAGGCTAATCCCATGGAAGTAGAAAATGCTACATGGATGTTAAC AGTAAGTACGCTGTTCTCTAAGTAACACTTGGAAGAAGAAAAGGAAAGAAAGTCGTCTGAGATTATAGACATTTGCACGT TTTGATCAACTTCTTTTTCCTCATAATCAATTCTGACACACAGAAGCTACTCAAGGAAGCTTCTCCCCAGAATTGATTCC GGCTTCAGAATTAATTCTAGAATAATTTCCAAACATGCATACAATGAAACTATACAAGCATAATCACTTTTAGAAAACAA CAATGCCAAATACATCTACAATACCTTGATGTGATATTCATTACTAGGCGTTTGCAGCAGAGTTTCCTTGATTTCATGCA CAAATACATCTATATTATATGCACTTGTTGTTTTCTCATCCAAATTGATATGGCTAACTGTTTTATTATGTTAGGTCTTC CACTGTTATGGTCACTATTTCTGTCTCCATTTTGAAGCCTTTCAACTAGGCACGGCTCCGGTTTACATGGCATTCCTCCG TTTCATGGGAGATGAAAGAGAAGCCAGGAGCTACAGCTACAGTCTTGAGGTTGGAGGAAGCGGGCGTAAACTAACATATG AGGGCAGTCCAAGAAGTATTAGAGATAGCCACAAGAAAGTTAGAGACAGCCATGACGGCCTTGTTGTGCATCGTAACATG GCAATTTTCTTCTCAGGTGGGGATAGTAAAGAGTTGAAGTTACGGGAAAGATATGGAAACAACGAACCCCTGTGGGTGGA GTGGACATACCCAACATGTATAGCTAGATTTTGCTTGCATCTTCCCCTCCATGTAATTTATTTAGAGGGTAATGTTCTTG CAAGCTGTTGATAATTTTGGAAAGTAGTTAAGCCTGCTGAATGTTGATTGAGGTTTCAACTTACAAAAGAAGCACTAGCA GTACCTCTCCCTTTTTTGGAGTTCTAACCAAGATATATACTAGTCAAATCTTTTGGTCCTACGTGTATCATATGCTAAAT TCCTGGAACAGTTTTTCTCTCATTCTTTTTGTTTTACATTTTCTGCAAACTTTCCATTGACAACCTGACTTATCATCCTT TCTAACCATTTAGAAATCATATACTATGCTGCTATTTCCTACCTTTAATGTCTATAATAGTTTAAACAGTTGTTCTGCAT CGTTTTCTGAGTCATATTCTAACGAACTCTTATAAATTCACACTCCGCATACTTTTCTTTCCACACATTTCACATCATAT TTCTCACTTATCTACTATTTTTATCTCTTTC
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0396300.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTGGATGAGGATGTGCGTCCCCATCTGTTTTCTTCAGTCACCAAGCTACATGGCAATGGTCCTACTGCTACCAGTGT CCACGAGATTCTTGAATGCCCTGTTTGCACCAATGCAATGTACCCTCCAATCCATCAGTGCCGCAACGGGCATACCCTTT GTTCGACATGTAAGACAAGGGTACACAATAGGTGCCCAACTTGTAGACAGGAACTGGGTGATATAAGGTGTCTGGCGTTG GAGAAGATAGCAGAATCACTTGAACTGCCTTGCGAATACAGATCTCTTGGGTGTCCAGAGATATTCCCCTATTACAGAAA ACTCAAACATGAGTCTATTTGTAACTTCAGACCGTACAATTGCCCTTACACTGGGTCAGACTGCTCTGTTGTTGGGGATA TTCCACACCTTGTTGCTCATTTAAGGGACGACCACCGTGTTGATATGTATTCTGCATGCACTTTTAACCACCGCTACGTC AAGGCTAATCCCATGGAAGTAGAAAATGCTACATGGATGTTAACAGTCTTCCACTGTTATGGTCACTATTTCTGTCTCCA TTTTGAAGCCTTTCAACTAGGCACGGCTCCGGTTTACATGGCATTCCTCCGTTTCATGGGAGATGAAAGAGAAGCCAGGA GCTACAGCTACAGTCTTGAGGTTGGAGGAAGCGGGCGTAAACTAACATATGAGGGCAGTCCAAGAAGTATTAGAGATAGC CACAAGAAAGTTAGAGACAGCCATGACGGCCTTGTTGTGCATCGTAACATGGCAATTTTCTTCTCAGGTGGGGATAGTAA AGAGTTGAAGTTACGGGAAAGATATGGAAACAACGAACCCCTGTGGGTGGAGTGGACATACCCAACATGTATAGCTAGAT TTTGCTTGCATCTTCCCCTCCATGTAATTTATTTAGAGGGTAATGTTCTTGCAAGCTGTTGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0396300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVDEDVRPHLFSSVTKLHGNGPTATSVHEILECPVCTNAMYPPIHQCRNGHTLCSTCKTRVHNRCPTCRQELGDIRCLAL EKIAESLELPCEYRSLGCPEIFPYYRKLKHESICNFRPYNCPYTGSDCSVVGDIPHLVAHLRDDHRVDMYSACTFNHRYV KANPMEVENATWMLTVFHCYGHYFCLHFEAFQLGTAPVYMAFLRFMGDEREARSYSYSLEVGGSGRKLTYEGSPRSIRDS HKKVRDSHDGLVVHRNMAIFFSGGDSKELKLRERYGNNEPLWVEWTYPTCIARFCLHLPLHVIYLEGNVLASC
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.30.40.10
11 86 76 5.0E-7
IPR013083
PANTHER
PTHR10315:SF42
16 272 257 7.3E-168 –
PANTHER
PTHR10315
16 272 257 7.3E-168 –
SUPERFAMILY
SSF57850
23 72 50 3.83E-6 –
CDD
cd16571
31 69 39 6.77354E-14 –
ProSiteProfiles
PS50089
33 69 37 9.421
IPR001841
Pfam
PF03145
75 272 198 1.7E-74
IPR018121
SUPERFAMILY
SSF49599
86 269 184 1.63E-45
IPR008974
ProSiteProfiles
PS51081
86 146 61 14.134
IPR013010
Gene3D
G3DSA:3.30.40.10
87 141 55 1.5E-17
IPR013083
Gene3D
G3DSA:2.60.210.10
158 272 115 7.4E-31
IPR008974

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0006511
Biological process Ubiquitin-dependent protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
Subterm of
GO:0007275
Biological process Multicellular organism development The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of
GO:0042025
Cellular component Host cell nucleus A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0396300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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